Wall clock time and date at job start Tue Mar 31 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38304 * 119.96297 * 2 1 4 4 C 1.38263 * 120.13974 * 179.97438 * 3 2 1 5 5 C 1.38137 * 120.07103 * 0.27275 * 4 3 2 6 6 C 1.38857 * 119.92285 * 359.47365 * 5 4 3 7 7 N 1.39934 * 120.06394 * 180.24835 * 6 5 4 8 8 C 1.46500 * 119.99690 * 248.12965 * 7 6 5 9 9 C 1.50700 * 109.47083 * 90.00730 * 8 7 6 10 10 H 1.08003 * 119.99896 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00143 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00007 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00031 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47004 * 89.99727 * 13 11 9 15 15 H 1.48502 * 109.47374 * 209.99736 * 13 11 9 16 16 H 1.48501 * 109.47219 * 329.99671 * 13 11 9 17 17 C 1.34772 * 119.99905 * 68.13750 * 7 6 5 18 18 O 1.21287 * 120.00320 * 4.72624 * 17 7 6 19 19 C 1.50697 * 119.99963 * 184.72880 * 17 7 6 20 20 N 1.46498 * 109.47174 * 179.97438 * 19 17 7 21 21 C 1.34779 * 120.00180 * 180.02562 * 20 19 17 22 22 O 1.21517 * 119.99689 * 0.02562 * 21 20 19 23 23 O 1.34635 * 120.00305 * 180.02562 * 21 20 19 24 24 C 1.45203 * 116.99766 * 180.02562 * 23 21 20 25 25 C 1.53005 * 109.47341 * 60.00186 * 24 23 21 26 26 C 1.53003 * 109.46671 * 180.02562 * 24 23 21 27 27 C 1.52997 * 109.47100 * 299.99702 * 24 23 21 28 28 C 1.38086 * 119.96555 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47007 * 89.99649 * 1 2 3 30 30 H 1.08999 * 109.47074 * 210.00272 * 1 2 3 31 31 H 1.09004 * 109.46608 * 329.99928 * 1 2 3 32 32 H 1.07994 * 119.93445 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.96443 * 180.02562 * 4 3 2 34 34 H 1.07995 * 120.04104 * 179.72808 * 5 4 3 35 35 H 1.09004 * 109.47029 * 210.00015 * 8 7 6 36 36 H 1.08999 * 109.47254 * 330.00343 * 8 7 6 37 37 H 0.97001 * 119.99696 * 180.02562 * 12 11 9 38 38 H 1.08994 * 109.47186 * 299.99990 * 19 17 7 39 39 H 1.09002 * 109.47345 * 59.99693 * 19 17 7 40 40 H 0.96995 * 120.00048 * 0.02562 * 20 19 17 41 41 H 1.08999 * 109.46783 * 59.99558 * 25 24 23 42 42 H 1.09004 * 109.46609 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.46544 * 299.99721 * 25 24 23 44 44 H 1.08997 * 109.47143 * 59.99993 * 26 24 23 45 45 H 1.09005 * 109.47276 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.47081 * 299.99560 * 26 24 23 47 47 H 1.08996 * 109.47096 * 60.00751 * 27 24 23 48 48 H 1.09005 * 109.46783 * 180.02562 * 27 24 23 49 49 H 1.09000 * 109.47308 * 299.99909 * 27 24 23 50 50 H 1.08005 * 120.03527 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 0.0005 5 6 4.2763 0.0092 -0.0046 6 6 3.5856 -1.1954 0.0007 7 7 4.2876 -2.4060 0.0008 8 6 4.2416 -3.2793 -1.1746 9 6 5.3646 -2.9186 -2.1126 10 1 6.0443 -2.1186 -1.8588 11 6 5.5244 -3.6100 -3.2947 12 7 4.6971 -4.5846 -3.6035 13 14 6.9160 -3.1624 -4.4577 14 1 8.1216 -3.9598 -4.1170 15 1 6.5072 -3.4557 -5.8548 16 1 7.2256 -1.7160 -4.3257 17 6 5.0057 -2.7684 1.0821 18 8 4.9752 -2.0887 2.0861 19 6 5.8467 -4.0183 1.0437 20 7 6.5245 -4.1906 2.3310 21 6 7.3366 -5.2479 2.5288 22 8 7.5070 -6.0579 1.6392 23 8 7.9591 -5.4065 3.7120 24 6 8.8192 -6.5677 3.8539 25 6 9.9340 -6.5077 2.8076 26 6 9.4340 -6.5788 5.2549 27 6 7.9954 -7.8406 3.6490 28 6 2.1967 -1.1963 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6561 2.1325 0.0004 33 1 4.1169 2.1398 0.0010 34 1 5.3562 0.0131 -0.0086 35 1 4.3501 -4.3174 -0.8603 36 1 3.2869 -3.1520 -1.6848 37 1 4.8097 -5.0712 -4.4350 38 1 5.2080 -4.8802 0.8508 39 1 6.5897 -3.9322 0.2509 40 1 6.3888 -3.5438 3.0409 41 1 10.5208 -5.6008 2.9537 42 1 10.5798 -7.3793 2.9145 43 1 9.4956 -6.5000 1.8098 44 1 8.6396 -6.6218 6.0000 45 1 10.0800 -7.4503 5.3614 46 1 10.0209 -5.6720 5.4014 47 1 7.5571 -7.8329 2.6510 48 1 8.6410 -8.7123 3.7559 49 1 7.2013 -7.8834 4.3944 50 1 1.6567 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069779808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:01 Heat of formation + Delta-G solvation = -94.593647 kcal Electronic energy + Delta-G solvation = -31092.590473 eV Core-core repulsion = 26891.923143 eV Total energy + Delta-G solvation = -4200.667330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.66682 -40.02393 -38.41525 -37.08101 -35.36011 -34.41805 -33.71944 -32.81862 -32.16830 -30.10663 -27.62502 -27.47158 -27.38876 -27.17839 -26.51613 -23.20440 -22.78946 -21.69887 -21.22362 -20.04843 -18.89876 -18.03258 -16.91709 -16.65213 -16.38359 -16.12081 -15.86991 -15.74527 -15.23808 -14.84284 -14.63545 -14.55797 -14.23244 -14.08621 -13.70425 -13.51655 -13.35548 -12.82126 -12.72886 -12.62738 -12.55111 -12.37532 -12.15440 -12.02177 -11.92483 -11.88825 -11.75574 -11.54596 -11.38133 -11.32399 -11.28224 -11.08708 -10.84824 -10.80216 -10.31839 -10.25951 -9.92010 -9.91249 -9.49981 -8.98061 -8.69584 -8.60605 -8.36444 -7.78940 -6.24663 -4.32819 1.66846 1.74460 2.24822 2.98097 3.06648 3.22350 3.29468 3.32084 3.59923 4.09663 4.30049 4.35913 4.68017 4.71737 4.86505 5.01454 5.09011 5.10498 5.17603 5.38334 5.41385 5.47529 5.50789 5.56272 5.62215 5.69841 5.71317 5.74343 5.75642 5.83360 5.88478 5.90911 5.96443 5.99995 6.08692 6.22746 6.29383 6.38767 6.46930 6.57852 6.66681 6.78355 6.83113 6.89519 7.05480 7.16769 7.49716 7.65674 7.68581 7.91859 7.98129 8.55554 8.61737 8.75945 9.35541 10.82566 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.008635 B = 0.003293 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.826005 B = 8501.027441 C =10744.924010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.083 4.083 3 C -0.133 4.133 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.177 3.823 7 N -0.553 5.553 8 C 0.235 3.765 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.070 3.930 12 N -0.887 5.887 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.518 3.482 18 O -0.556 6.556 19 C 0.125 3.875 20 N -0.699 5.699 21 C 0.651 3.349 22 O -0.564 6.564 23 O -0.366 6.366 24 C 0.136 3.864 25 C -0.185 4.185 26 C -0.140 4.140 27 C -0.184 4.184 28 C -0.121 4.121 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.267 0.733 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.413 0.587 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 1.155 12.204 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.084 4.084 3 C -0.151 4.151 4 C -0.128 4.128 5 C -0.129 4.129 6 C 0.086 3.914 7 N -0.280 5.280 8 C 0.117 3.883 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.134 4.134 12 N -0.524 5.524 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.306 3.694 18 O -0.436 6.436 19 C 0.000 4.000 20 N -0.361 5.361 21 C 0.404 3.596 22 O -0.453 6.453 23 O -0.281 6.281 24 C 0.099 3.901 25 C -0.242 4.242 26 C -0.197 4.197 27 C -0.241 4.241 28 C -0.141 4.141 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.250 0.750 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.125 0.871 12.151 12.234 hybrid contribution 0.782 0.326 -0.710 1.105 sum 1.907 1.196 11.441 11.660 Atomic orbital electron populations 1.20744 0.91354 1.02358 1.02168 1.19673 0.95759 0.92728 1.00217 1.20898 0.94144 0.97121 1.02921 1.20919 0.94134 0.97398 1.00394 1.21205 1.00084 0.91665 0.99995 1.17497 0.90309 0.85667 0.97916 1.45840 1.45939 1.19388 1.16828 1.19695 0.99010 0.88780 0.80834 1.21369 1.13649 1.19006 1.04179 0.91906 1.24899 0.96344 0.94553 0.97603 1.69907 1.36625 1.21294 1.24618 0.86495 0.82083 0.79011 0.79959 1.20266 1.20976 1.19743 1.20322 0.79647 0.86681 0.82722 1.90641 1.65468 1.55527 1.31943 1.21084 0.97217 0.96882 0.84853 1.44402 1.47684 1.26384 1.17618 1.17902 0.78583 0.81952 0.81207 1.90935 1.66296 1.44211 1.43861 1.86289 1.58701 1.48054 1.35032 1.22034 0.88755 0.82846 0.96469 1.22528 0.97897 1.02244 1.01506 1.21850 1.00960 1.02955 0.93913 1.22525 1.00520 0.96110 1.04973 1.21055 0.93022 0.97984 1.02037 0.91272 0.91736 0.91838 0.86481 0.86207 0.86256 0.93702 0.93869 0.92326 0.87945 0.86417 0.74951 0.92222 0.91318 0.89057 0.91546 0.90294 0.91538 0.89094 0.91315 0.92258 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.08 -1.25 5.88 -104.65 -0.62 -1.86 16 3 C -0.13 -1.89 9.70 -39.55 -0.38 -2.28 16 4 C -0.11 -1.69 10.04 -39.61 -0.40 -2.09 16 5 C -0.11 -2.03 9.56 -39.39 -0.38 -2.40 16 6 C 0.18 3.48 4.74 -83.69 -0.40 3.08 16 7 N -0.55 -11.38 2.51 -114.74 -0.29 -11.67 16 8 C 0.23 5.39 4.88 -5.19 -0.03 5.37 16 9 C -0.54 -13.76 9.16 -34.44 -0.32 -14.08 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 13 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.52 10.24 7.60 -10.99 -0.08 10.16 16 18 O -0.56 -11.58 15.43 5.55 0.09 -11.50 16 19 C 0.12 2.30 4.82 -5.20 -0.03 2.27 16 20 N -0.70 -11.72 5.53 -66.47 -0.37 -12.09 16 21 C 0.65 11.05 8.06 54.06 0.44 11.49 16 22 O -0.56 -10.74 11.88 -19.29 -0.23 -10.97 16 23 O -0.37 -5.42 9.94 -40.31 -0.40 -5.82 16 24 C 0.14 1.65 1.13 -90.62 -0.10 1.55 16 25 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 26 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 27 C -0.18 -2.18 8.37 37.16 0.31 -1.87 16 28 C -0.12 -2.13 9.34 -39.40 -0.37 -2.50 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 35 H 0.05 1.04 6.47 -51.93 -0.34 0.71 16 36 H 0.04 1.05 7.86 -51.93 -0.41 0.64 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.10 1.87 7.26 -51.93 -0.38 1.50 16 39 H 0.12 2.34 7.91 -51.93 -0.41 1.93 16 40 H 0.41 6.60 7.55 -40.82 -0.31 6.29 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.38 5.88 -51.93 -0.31 1.07 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 413.87 15.07 6.24 6.24 Total: -1.00 -29.47 413.87 -8.60 -38.06 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.91 Total: 10.77 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.44 Total: 4.83 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.08 Total: -47.10 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.54 Total: -28.29 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -29.47 -8.60 -38.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069779808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.532 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds