Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99849 * 2 1 4 4 C 1.50701 * 109.47292 * 179.97438 * 3 2 1 5 5 O 1.21300 * 119.99751 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99961 * 179.97438 * 4 3 2 7 7 C 1.40141 * 120.00119 * 184.47130 * 6 4 3 8 8 C 1.38647 * 120.09827 * 325.33572 * 7 6 4 9 9 C 1.38255 * 120.00813 * 179.97438 * 8 7 6 10 10 C 1.50703 * 119.89389 * 179.97438 * 9 8 7 11 11 F 1.39894 * 109.47269 * 90.00052 * 10 9 8 12 12 F 1.39898 * 109.46679 * 210.00539 * 10 9 8 13 13 F 1.39903 * 109.47101 * 329.99695 * 10 9 8 14 14 C 1.38303 * 120.20712 * 359.72553 * 9 8 7 15 15 C 1.38195 * 120.20067 * 0.55335 * 14 9 8 16 16 C 1.38791 * 119.98626 * 359.44518 * 15 14 9 17 17 S 1.76196 * 120.10007 * 180.25410 * 16 15 14 18 18 C 1.81403 * 103.00287 * 0.02562 * 17 16 15 19 19 C 1.50699 * 109.47194 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99554 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00053 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99820 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00122 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46736 * 60.00021 * 23 21 19 25 25 H 1.48497 * 109.47544 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47121 * 300.00356 * 23 21 19 27 27 H 1.09004 * 109.46699 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47337 * 299.99763 * 1 2 3 29 29 H 1.08994 * 109.47016 * 60.00365 * 1 2 3 30 30 H 1.08998 * 109.47029 * 59.99563 * 3 2 1 31 31 H 1.09003 * 109.46768 * 299.99880 * 3 2 1 32 32 H 0.96999 * 120.00193 * 4.47441 * 6 4 3 33 33 H 1.08004 * 119.99704 * 359.95938 * 8 7 6 34 34 H 1.08006 * 119.89690 * 180.30395 * 14 9 8 35 35 H 1.07994 * 120.00596 * 179.72113 * 15 14 9 36 36 H 1.08995 * 109.46696 * 299.99792 * 18 17 16 37 37 H 1.08999 * 109.46506 * 59.99962 * 18 17 16 38 38 H 0.97003 * 119.99768 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0342 0.0915 0.0006 6 7 4.2764 2.2970 0.0002 7 6 5.6704 2.1885 -0.0938 8 6 6.3265 1.1222 0.5019 9 6 7.7018 1.0167 0.4075 10 6 8.4125 -0.1430 1.0565 11 9 8.5025 -1.2025 0.1474 12 9 9.6983 0.2534 1.4396 13 9 7.6963 -0.5563 2.1850 14 6 8.4269 1.9694 -0.2849 15 6 7.7823 3.0388 -0.8771 16 6 6.4020 3.1528 -0.7875 17 16 5.5764 4.5114 -1.5471 18 6 6.9368 5.4480 -2.2972 19 6 6.3843 6.6628 -2.9974 20 1 5.3210 6.8521 -2.9920 21 6 7.2361 7.5318 -3.6457 22 7 8.5306 7.3003 -3.6535 23 14 6.5511 9.0371 -4.5141 24 1 5.8423 9.8957 -3.5314 25 1 7.6648 9.8040 -5.1281 26 1 5.6018 8.6087 -5.5726 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8613 3.1713 0.0651 33 1 5.7633 0.3740 1.0399 34 1 9.5006 1.8794 -0.3597 35 1 8.3520 3.7833 -1.4132 36 1 7.6332 5.7625 -1.5200 37 1 7.4574 4.8179 -3.0184 38 1 9.1299 7.9119 -4.1093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069812103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -206.983776 kcal Electronic energy + Delta-G solvation = -27782.095982 eV Core-core repulsion = 23108.066329 eV Total energy + Delta-G solvation = -4674.029653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.04906 -47.57399 -47.50033 -40.63030 -38.80097 -37.56368 -34.96433 -33.40983 -31.86992 -30.64975 -28.81040 -28.52977 -26.16611 -26.09256 -23.75101 -22.69398 -22.04308 -20.67838 -18.81455 -18.37389 -18.28831 -17.57429 -17.34696 -16.90928 -16.58370 -16.42855 -15.84845 -15.32930 -15.05892 -14.90812 -14.51003 -14.44689 -14.13715 -14.03136 -13.96356 -13.81195 -13.67864 -13.61516 -13.32180 -13.22071 -12.69108 -12.63033 -12.50423 -12.39545 -12.05034 -11.76003 -11.48658 -11.02778 -10.92592 -10.58496 -10.30348 -10.12038 -9.90044 -9.86069 -9.63232 -9.38141 -8.78102 -8.40058 -6.92985 -6.39960 -4.47249 0.91917 1.29081 2.03684 2.37391 2.54348 2.80821 3.15243 3.20158 3.21487 3.33137 3.52018 3.73929 3.88129 4.15938 4.18151 4.46120 4.55110 4.76807 4.85530 4.93774 4.97962 5.01240 5.06293 5.09025 5.35932 5.37691 5.43425 5.80540 5.95473 6.16319 6.27228 6.33331 6.64027 6.75652 6.78753 6.83586 7.23018 7.50873 7.72515 7.95022 8.53176 9.18006 10.70936 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.007890 B = 0.003572 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3547.883382 B = 7837.498372 C =11120.463458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.046 3.954 4 C 0.514 3.486 5 O -0.502 6.502 6 N -0.660 5.660 7 C 0.144 3.856 8 C -0.056 4.056 9 C -0.194 4.194 10 C 0.514 3.486 11 F -0.178 7.178 12 F -0.179 7.179 13 F -0.179 7.179 14 C -0.060 4.060 15 C -0.121 4.121 16 C -0.063 4.063 17 S -0.141 6.141 18 C 0.072 3.928 19 C -0.525 4.525 20 H 0.069 0.931 21 C 0.071 3.929 22 N -0.887 5.887 23 Si 0.909 3.091 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.416 0.584 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 -10.622 9.192 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.034 4.034 4 C 0.301 3.699 5 O -0.375 6.375 6 N -0.308 5.308 7 C 0.043 3.957 8 C -0.078 4.078 9 C -0.199 4.199 10 C 0.460 3.540 11 F -0.159 7.159 12 F -0.161 7.161 13 F -0.161 7.161 14 C -0.081 4.081 15 C -0.146 4.146 16 C -0.179 4.179 17 S 0.108 5.892 18 C -0.075 4.075 19 C -0.564 4.564 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.736 3.264 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.254 0.746 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.369 -11.152 9.009 17.126 hybrid contribution 0.846 1.032 -0.366 1.384 sum -8.523 -10.120 8.643 15.804 Atomic orbital electron populations 1.22850 0.80141 1.03383 1.00283 1.88012 1.19956 1.24941 1.95483 1.22186 0.90630 0.87285 1.03339 1.20408 0.89005 0.84188 0.76333 1.90738 1.74181 1.26330 1.46265 1.43273 1.04375 1.10202 1.72955 1.16850 0.82232 0.96640 0.99970 1.20808 0.92202 0.97805 0.97034 1.19652 0.94631 0.97695 1.07966 1.18212 0.76716 0.82688 0.76390 1.93217 1.96130 1.59469 1.67109 1.93173 1.40583 1.90725 1.91584 1.93174 1.78058 1.91483 1.53347 1.20814 1.00179 0.92416 0.94670 1.21221 0.92550 0.99302 1.01505 1.22218 0.97014 0.99909 0.98796 1.85208 1.21309 1.20272 1.62397 1.21486 0.91403 0.96506 0.98108 1.20517 0.94310 1.06572 1.35009 0.91328 1.24940 0.94692 0.98189 0.95639 1.69916 1.02446 1.37679 1.42301 0.86362 0.78626 0.81646 0.79776 1.19783 1.20874 1.19783 0.89033 0.93724 0.93598 0.89748 0.89394 0.74611 0.83130 0.84606 0.83401 0.93370 0.93362 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.23 10.24 -55.14 -0.56 -4.79 16 3 C 0.05 0.43 6.42 36.01 0.23 0.67 16 4 C 0.51 6.91 7.75 -10.99 -0.09 6.82 16 5 O -0.50 -8.71 13.92 -14.37 -0.20 -8.91 16 6 N -0.66 -8.67 5.02 -9.71 -0.05 -8.71 16 7 C 0.14 2.27 6.32 -83.43 -0.53 1.74 16 8 C -0.06 -0.89 8.05 -39.42 -0.32 -1.21 16 9 C -0.19 -2.93 5.45 -104.59 -0.57 -3.50 16 10 C 0.51 7.32 3.36 36.01 0.12 7.44 16 11 F -0.18 -2.63 17.30 2.25 0.04 -2.60 16 12 F -0.18 -2.43 16.46 2.25 0.04 -2.40 16 13 F -0.18 -2.56 16.45 2.25 0.04 -2.53 16 14 C -0.06 -0.89 9.39 -39.57 -0.37 -1.26 16 15 C -0.12 -2.00 9.36 -39.39 -0.37 -2.37 16 16 C -0.06 -1.07 6.12 -38.90 -0.24 -1.31 16 17 S -0.14 -2.62 20.72 -107.50 -2.23 -4.85 16 18 C 0.07 1.64 4.09 36.01 0.15 1.79 16 19 C -0.52 -13.32 9.13 -34.44 -0.31 -13.63 16 20 H 0.07 1.71 7.71 -52.48 -0.40 1.31 16 21 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 22 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 23 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.42 4.53 7.97 -40.82 -0.33 4.20 16 33 H 0.15 2.43 5.74 -52.48 -0.30 2.13 16 34 H 0.14 1.72 7.60 -52.48 -0.40 1.32 16 35 H 0.15 2.55 5.88 -52.49 -0.31 2.24 16 36 H 0.05 1.14 7.75 -51.93 -0.40 0.74 16 37 H 0.05 1.16 7.75 -51.92 -0.40 0.76 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -29.84 355.58 -6.92 -36.76 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.79 Total: 2.79 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.28 Total: -1.77 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.69 Total: -31.85 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.76 Total: -13.70 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.11 Total: -7.52 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.23 Total: -4.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.84 -6.92 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069812103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.222 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds