Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.30502 * 125.65060 * 2 1 4 4 C 1.34135 * 109.25995 * 180.14883 * 3 2 1 5 5 S 1.76195 * 125.99160 * 179.88441 * 4 3 2 6 6 O 1.42097 * 106.40350 * 156.14805 * 5 4 3 7 7 O 1.42104 * 106.40223 * 23.22680 * 5 4 3 8 8 N 1.65603 * 107.21515 * 269.68743 * 5 4 3 9 9 C 1.46497 * 120.00090 * 269.99932 * 8 5 4 10 10 C 1.50704 * 109.47198 * 265.00143 * 9 8 5 11 11 H 1.08000 * 119.99683 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00260 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99743 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00127 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46981 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46991 * 120.00128 * 14 12 10 17 17 H 1.48501 * 109.47043 * 240.00171 * 14 12 10 18 18 C 1.39683 * 119.99882 * 90.00186 * 8 5 4 19 19 C 1.38926 * 120.07282 * 335.02190 * 18 8 5 20 20 C 1.38086 * 119.92385 * 179.97438 * 19 18 8 21 21 C 1.38307 * 120.07266 * 359.72373 * 20 19 18 22 22 C 1.38263 * 120.14914 * 0.54903 * 21 20 19 23 23 C 1.50706 * 119.96288 * 179.72920 * 22 21 20 24 24 C 1.38127 * 120.07461 * 359.45305 * 22 21 20 25 25 C 1.34666 * 108.01587 * 359.61922 * 4 3 2 26 26 N 1.35047 * 125.65401 * 179.72957 * 2 1 3 27 27 C 1.46497 * 126.39346 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47487 * 270.27350 * 1 2 3 29 29 H 1.09004 * 109.47556 * 30.27163 * 1 2 3 30 30 H 1.08998 * 109.47421 * 150.27398 * 1 2 3 31 31 H 1.08991 * 109.47018 * 24.99838 * 9 8 5 32 32 H 1.09001 * 109.47150 * 145.00482 * 9 8 5 33 33 H 0.96995 * 119.99542 * 179.97438 * 13 12 10 34 34 H 1.08004 * 120.04128 * 359.97438 * 19 18 8 35 35 H 1.07997 * 119.96506 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.92999 * 180.29778 * 21 20 19 37 37 H 1.09001 * 109.46953 * 269.72266 * 23 22 21 38 38 H 1.09000 * 109.47318 * 29.71864 * 23 22 21 39 39 H 1.09000 * 109.47161 * 149.72494 * 23 22 21 40 40 H 1.07997 * 120.03823 * 180.25638 * 24 22 21 41 41 H 1.08004 * 126.59190 * 180.25241 * 25 4 3 42 42 H 1.08998 * 109.47461 * 270.02702 * 27 26 2 43 43 H 1.09005 * 109.47042 * 30.03235 * 27 26 2 44 44 H 1.09007 * 109.47106 * 150.02849 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 -0.0033 5 16 4.9500 1.7574 -0.0075 6 8 6.0303 1.0151 0.5412 7 8 4.5046 2.9949 0.5308 8 7 5.3392 2.0491 -1.5905 9 6 6.2858 1.1732 -2.2854 10 6 7.6685 1.7680 -2.2107 11 1 7.8263 2.7046 -1.6967 12 6 8.7321 1.1160 -2.7978 13 7 8.5399 -0.0248 -3.4234 14 14 10.4458 1.8537 -2.7059 15 1 10.3944 3.1326 -1.9528 16 1 11.3555 0.9073 -2.0117 17 1 10.9498 2.1074 -4.0795 18 6 4.7650 3.1303 -2.2631 19 6 3.5404 3.6378 -1.8475 20 6 2.9758 4.7071 -2.5143 21 6 3.6308 5.2764 -3.5912 22 6 4.8470 4.7701 -4.0109 23 6 5.5542 5.3898 -5.1887 24 6 5.4174 3.7007 -3.3484 25 6 3.5926 -0.6642 0.0031 26 7 2.2941 -1.0973 0.0052 27 6 1.8425 -2.4909 0.0123 28 1 -0.3634 0.0049 1.0277 29 1 -0.3634 0.8875 -0.5180 30 1 -0.3634 -0.8924 -0.5095 31 1 6.2868 0.1913 -1.8124 32 1 5.9892 1.0733 -3.3295 33 1 9.2881 -0.4832 -3.8367 34 1 3.0305 3.1966 -1.0038 35 1 2.0236 5.1019 -2.1920 36 1 3.1894 6.1157 -4.1081 37 1 5.2409 4.8894 -6.1050 38 1 5.3016 6.4484 -5.2483 39 1 6.6315 5.2796 -5.0647 40 1 6.3694 3.3084 -3.6742 41 1 4.4776 -1.2831 0.0064 42 1 1.7304 -2.8314 1.0417 43 1 0.8839 -2.5649 -0.5014 44 1 2.5773 -3.1136 -0.4983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069846823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = 16.717361 kcal Electronic energy + Delta-G solvation = -29397.087043 eV Core-core repulsion = 25442.740385 eV Total energy + Delta-G solvation = -3954.346657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.24457 -39.02239 -36.63862 -35.58069 -35.20289 -34.29199 -32.75426 -32.03375 -31.77593 -29.15015 -27.70636 -27.29866 -26.96953 -26.02349 -22.99757 -22.28638 -21.23716 -21.06041 -20.25215 -18.45051 -17.68574 -16.82626 -16.60712 -16.23818 -15.99898 -15.56026 -15.28634 -14.66917 -14.39626 -14.24675 -13.91491 -13.81537 -13.63928 -13.37202 -13.20133 -12.97477 -12.80862 -12.70585 -12.57234 -12.46684 -12.02313 -11.85743 -11.74887 -11.50591 -11.36041 -11.19604 -11.15674 -10.92885 -10.79822 -10.62149 -10.35876 -10.26185 -10.06764 -9.95474 -9.78465 -9.07968 -8.75378 -8.50994 -8.07083 -7.27875 -6.13072 -4.17400 0.90920 1.65823 2.01355 2.10688 2.50784 2.60823 3.29238 3.37212 3.43829 3.65841 4.18007 4.27939 4.38770 4.40413 4.50648 4.58022 4.74334 4.96604 5.00825 5.11006 5.21216 5.26561 5.38162 5.39035 5.46954 5.56706 5.63675 5.78910 5.92663 5.96727 6.00962 6.05681 6.25710 6.30754 6.33344 6.55230 6.75817 6.92201 7.02011 7.08776 7.13689 7.24654 7.41038 7.44790 7.76713 7.83187 7.88781 8.07777 8.85925 9.47951 10.95247 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.004994 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.346260 B = 5605.332243 C = 7542.955590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.199 3.801 3 N -0.410 5.410 4 C -0.556 4.556 5 S 2.714 3.286 6 O -0.934 6.934 7 O -0.949 6.949 8 N -0.922 5.922 9 C 0.246 3.754 10 C -0.529 4.529 11 H 0.066 0.934 12 C 0.066 3.934 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.191 3.809 19 C -0.169 4.169 20 C -0.093 4.093 21 C -0.159 4.159 22 C -0.074 4.074 23 C -0.109 4.109 24 C -0.133 4.133 25 C 0.071 3.929 26 N -0.456 5.456 27 C 0.066 3.934 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.149 0.851 41 H 0.196 0.804 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.123 -2.757 1.837 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.067 4.067 3 N -0.128 5.128 4 C -0.766 4.766 5 S 2.800 3.200 6 O -0.924 6.924 7 O -0.939 6.939 8 N -0.748 5.748 9 C 0.126 3.874 10 C -0.568 4.568 11 H 0.084 0.916 12 C -0.137 4.137 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.094 3.906 19 C -0.191 4.191 20 C -0.112 4.112 21 C -0.178 4.178 22 C -0.075 4.075 23 C -0.166 4.166 24 C -0.155 4.155 25 C -0.069 4.069 26 N -0.138 5.138 27 C -0.076 4.076 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.167 0.833 41 H 0.213 0.787 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.920 -2.046 2.533 16.250 hybrid contribution 0.799 -1.300 -0.245 1.546 sum -15.121 -3.347 2.288 15.655 Atomic orbital electron populations 1.20201 0.84318 1.04241 1.03657 1.23653 0.96019 0.81359 1.05625 1.70232 0.99117 1.27503 1.15926 1.33793 1.12600 1.07495 1.22671 1.01673 0.72333 0.73402 0.72542 1.93626 1.49615 1.73662 1.75485 1.93550 1.82434 1.41256 1.76626 1.55654 1.53085 1.35066 1.30969 1.19355 0.86433 0.88084 0.93538 1.21454 0.91766 1.08010 1.35535 0.91592 1.24898 0.99242 0.94722 0.94805 1.69927 1.31932 1.15621 1.35781 0.86450 0.83799 0.79579 0.77795 1.19369 1.20754 1.20850 1.17546 0.91208 0.88034 0.93846 1.21289 0.94623 1.00506 1.02688 1.20699 0.99310 0.95716 0.95480 1.20803 0.96237 1.01701 0.99077 1.19710 0.94977 0.95819 0.96967 1.20739 1.00509 0.99652 0.95711 1.21215 1.01406 0.96360 0.96504 1.22770 0.87780 0.95195 1.01197 1.45565 1.06488 1.08191 1.53513 1.22188 1.02491 0.78902 1.04067 0.89988 0.88730 0.90779 0.93743 0.93738 0.92631 0.84472 0.86467 0.86991 0.91622 0.92158 0.91403 0.83344 0.78675 0.89987 0.89041 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.19 36.00 0.37 -0.18 16 2 C 0.20 2.69 7.90 -155.42 -1.23 1.46 16 3 N -0.41 -7.25 10.23 -10.03 -0.10 -7.35 16 4 C -0.56 -10.39 6.92 -17.81 -0.12 -10.51 16 5 S 2.71 59.58 5.20 -107.50 -0.56 59.02 16 6 O -0.93 -22.36 16.81 -57.17 -0.96 -23.32 16 7 O -0.95 -22.15 15.09 -57.17 -0.86 -23.01 16 8 N -0.92 -20.98 2.98 -59.81 -0.18 -21.16 16 9 C 0.25 6.15 4.47 -5.19 -0.02 6.13 16 10 C -0.53 -14.43 7.90 -34.44 -0.27 -14.70 16 11 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 12 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 14 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.19 4.15 6.10 -83.79 -0.51 3.64 16 19 C -0.17 -3.40 8.47 -39.38 -0.33 -3.74 16 20 C -0.09 -1.61 10.04 -39.61 -0.40 -2.00 16 21 C -0.16 -2.58 9.69 -39.55 -0.38 -2.96 16 22 C -0.07 -1.30 5.88 -104.65 -0.62 -1.91 16 23 C -0.11 -1.55 10.01 36.01 0.36 -1.19 16 24 C -0.13 -2.76 8.69 -39.38 -0.34 -3.10 16 25 C 0.07 1.10 11.31 -16.56 -0.19 0.91 16 26 N -0.46 -5.59 3.15 -121.28 -0.38 -5.97 16 27 C 0.07 0.43 10.97 59.85 0.66 1.09 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.41 7.07 -51.93 -0.37 0.04 16 31 H 0.04 1.13 7.61 -51.93 -0.40 0.74 16 32 H 0.04 1.13 7.74 -51.93 -0.40 0.73 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.14 2.80 4.89 -52.48 -0.26 2.55 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.15 3.32 6.17 -52.49 -0.32 2.99 16 41 H 0.20 2.63 8.06 -52.48 -0.42 2.21 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.39 7.05 -51.93 -0.37 0.03 16 44 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -35.75 379.30 -10.62 -46.37 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.88 Total: 3.10 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -3.13 Total: -25.36 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.07 Total: -58.83 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.82 Total: -46.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 59.58 SS G_CDS: -0.56 Total: 59.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.75 -10.62 -46.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069846823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.091 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds