Wall clock time and date at job start Tue Mar 31 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48499 * 109.47139 * 270.00189 * 3 2 1 5 5 H 1.48493 * 109.47185 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.46827 * 150.00222 * 3 2 1 7 7 C 1.37882 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99545 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00063 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47428 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99818 * 84.87197 * 10 9 7 12 12 C 1.50695 * 109.47431 * 270.00361 * 11 10 9 13 13 C 1.38232 * 119.61840 * 94.97702 * 12 11 10 14 14 C 1.38628 * 119.15876 * 179.79113 * 13 12 11 15 15 C 1.38677 * 118.42330 * 0.47554 * 14 13 12 16 16 C 1.38186 * 119.15973 * 359.50622 * 15 14 13 17 17 N 1.31854 * 119.61921 * 275.00211 * 12 11 10 18 18 C 1.34772 * 119.99951 * 264.87627 * 10 9 7 19 19 O 1.21575 * 119.99924 * 175.25502 * 18 10 9 20 20 C 1.47695 * 120.00288 * 355.25967 * 18 10 9 21 21 C 1.39662 * 120.15953 * 52.27595 * 20 18 10 22 22 C 1.37968 * 119.86201 * 179.77025 * 21 20 18 23 23 Cl 1.73597 * 119.90112 * 180.27580 * 22 21 20 24 24 C 1.38564 * 120.19299 * 0.51168 * 22 21 20 25 25 C 1.38197 * 120.32171 * 359.74212 * 24 22 21 26 26 C 1.38315 * 120.13679 * 0.02562 * 25 24 22 27 27 F 1.35100 * 120.09545 * 179.97438 * 26 25 24 28 28 H 0.96991 * 120.00105 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47427 * 59.99776 * 9 7 2 30 30 H 1.09001 * 109.46976 * 300.00128 * 9 7 2 31 31 H 1.09005 * 109.47105 * 150.00538 * 11 10 9 32 32 H 1.08996 * 109.47163 * 30.00709 * 11 10 9 33 33 H 1.07999 * 120.41738 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.78577 * 180.23739 * 14 13 12 35 35 H 1.07997 * 120.41753 * 179.77861 * 15 14 13 36 36 H 1.07992 * 119.61342 * 180.25138 * 16 15 14 37 37 H 1.08002 * 120.06664 * 359.97438 * 21 20 18 38 38 H 1.07993 * 119.83840 * 179.72133 * 24 22 21 39 39 H 1.08005 * 119.92810 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 4.1368 -3.3038 -1.2645 12 6 2.8497 -4.0254 -1.5703 13 6 1.9117 -3.4303 -2.3930 14 6 0.7328 -4.1045 -2.6715 15 6 0.5361 -5.3533 -2.1014 16 6 1.5193 -5.8850 -1.2889 17 7 2.6309 -5.2168 -1.0496 18 6 4.3234 -3.1755 1.1615 19 8 4.6461 -4.3476 1.1712 20 6 4.2857 -2.4095 2.4237 21 6 3.1390 -1.6947 2.7768 22 6 3.1088 -0.9851 3.9596 23 17 1.6814 -0.1022 4.4029 24 6 4.2162 -0.9712 4.7924 25 6 5.3568 -1.6714 4.4481 26 6 5.4002 -2.3912 3.2678 27 9 6.5159 -3.0749 2.9319 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 4.9479 -4.0273 -1.1808 32 1 4.3587 -2.6007 -2.0672 33 1 2.0966 -2.4542 -2.8166 34 1 -0.0163 -3.6658 -3.3139 35 1 -0.3720 -5.9052 -2.2937 36 1 1.3756 -6.8587 -0.8445 37 1 2.2765 -1.7002 2.1268 38 1 4.1879 -0.4102 5.7147 39 1 6.2165 -1.6558 5.1018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069848204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:39 Heat of formation + Delta-G solvation = -11.919329 kcal Electronic energy + Delta-G solvation = -28592.539231 eV Core-core repulsion = 24441.039599 eV Total energy + Delta-G solvation = -4151.499632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.72932 -40.06188 -39.34015 -38.00362 -36.06413 -35.32465 -32.87449 -32.03048 -31.72217 -30.69629 -30.01515 -28.28293 -26.38909 -23.70621 -23.01506 -22.64295 -22.37279 -21.52701 -19.23554 -17.47833 -17.11711 -16.91862 -16.50326 -16.26111 -15.82879 -15.69706 -15.26227 -15.13158 -15.11249 -14.31996 -13.97522 -13.77451 -13.43039 -13.21779 -13.08591 -12.95391 -12.78922 -12.55759 -12.50961 -12.15182 -12.00683 -11.64159 -11.34917 -11.24664 -11.04202 -11.00529 -10.70087 -10.65749 -10.34072 -9.75360 -9.43757 -9.27276 -8.93675 -8.88371 -8.77686 -8.46759 -8.38173 -7.88349 -6.31265 -4.33436 0.95076 1.24965 1.58883 1.85228 2.35892 3.10683 3.13163 3.19953 3.22967 3.55554 3.74976 4.18756 4.30791 4.43669 4.77086 4.78541 4.88017 5.00227 5.14854 5.25436 5.29286 5.38334 5.53465 5.61610 5.69492 5.83080 5.90459 5.96386 6.04749 6.16759 6.26023 6.28697 6.31203 6.51864 6.55490 6.62587 6.70764 6.87277 7.16623 7.20719 7.33032 7.94264 8.28430 8.57036 8.70482 8.78759 9.27349 10.79376 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.005694 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.453042 B = 4916.373398 C = 6574.888484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.090 3.910 3 Si 0.856 3.144 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.199 3.801 10 N -0.580 5.580 11 C 0.175 3.825 12 C 0.117 3.883 13 C -0.123 4.123 14 C -0.079 4.079 15 C -0.177 4.177 16 C 0.085 3.915 17 N -0.460 5.460 18 C 0.563 3.437 19 O -0.524 6.524 20 C -0.143 4.143 21 C -0.036 4.036 22 C -0.058 4.058 23 Cl -0.058 7.058 24 C -0.071 4.071 25 C -0.160 4.160 26 C 0.140 3.860 27 F -0.126 7.126 28 H 0.267 0.733 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.146 0.854 37 H 0.187 0.813 38 H 0.141 0.859 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 -1.575 2.129 5.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.116 4.116 3 Si 0.682 3.318 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.102 0.898 9 C 0.078 3.922 10 N -0.310 5.310 11 C 0.051 3.949 12 C -0.022 4.022 13 C -0.143 4.143 14 C -0.105 4.105 15 C -0.197 4.197 16 C -0.072 4.072 17 N -0.169 5.169 18 C 0.349 3.651 19 O -0.401 6.401 20 C -0.147 4.147 21 C -0.054 4.054 22 C -0.085 4.085 23 Cl -0.029 7.029 24 C -0.090 4.090 25 C -0.179 4.179 26 C 0.120 3.880 27 F -0.105 7.105 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.204 0.796 38 H 0.159 0.841 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.842 -2.372 2.680 6.851 hybrid contribution -0.615 1.552 -0.499 1.743 sum 5.226 -0.820 2.181 5.722 Atomic orbital electron populations 1.69868 1.06072 1.27269 1.48082 1.24771 0.94559 0.98404 0.93870 0.87132 0.80963 0.84660 0.79000 1.19889 1.20624 1.18615 1.21292 0.88657 0.95100 1.53173 0.89807 1.20065 0.96346 0.77751 0.98036 1.47761 1.63352 1.15351 1.04562 1.20127 0.93584 0.94922 0.86238 1.21486 0.96971 0.90861 0.92873 1.21924 0.94030 0.99956 0.98402 1.21473 0.96813 0.94120 0.98124 1.22032 1.00439 0.97192 1.00047 1.22600 0.89625 0.99323 0.95688 1.67532 1.21714 1.07868 1.19806 1.17841 0.77783 0.86288 0.83142 1.90799 1.48160 1.14945 1.86227 1.19993 0.94576 1.02797 0.97356 1.22233 0.99473 0.89458 0.94270 1.20857 0.90043 1.00657 0.96938 1.98383 1.37904 1.74229 1.92382 1.20981 0.90867 0.97942 0.99237 1.20877 0.99977 1.00541 0.96548 1.17697 0.82672 0.93578 0.94089 1.91530 1.49470 1.77195 1.92278 0.92248 0.94362 0.95101 0.89121 0.89168 0.84713 0.85426 0.85693 0.83685 0.79598 0.84113 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.38 13.96 55.43 0.77 -22.61 16 2 C 0.09 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.86 18.77 27.47 -169.99 -4.67 14.10 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 7 C -0.54 -12.89 6.66 -34.44 -0.23 -13.12 16 8 H 0.08 2.28 7.26 -52.49 -0.38 1.89 16 9 C 0.20 4.15 3.78 -5.20 -0.02 4.13 16 10 N -0.58 -11.72 2.45 -177.61 -0.43 -12.16 16 11 C 0.17 3.16 5.72 -5.20 -0.03 3.13 16 12 C 0.12 2.22 5.84 -82.59 -0.48 1.74 16 13 C -0.12 -2.17 8.66 -39.44 -0.34 -2.51 16 14 C -0.08 -1.28 10.18 -39.28 -0.40 -1.68 16 15 C -0.18 -2.70 10.11 -39.44 -0.40 -3.10 16 16 C 0.09 1.44 11.18 -17.55 -0.20 1.24 16 17 N -0.46 -9.10 10.27 -9.47 -0.10 -9.19 16 18 C 0.56 12.02 6.93 -12.40 -0.09 11.93 16 19 O -0.52 -12.33 16.43 5.30 0.09 -12.24 16 20 C -0.14 -2.78 4.79 -104.91 -0.50 -3.28 16 21 C -0.04 -0.69 7.41 -39.15 -0.29 -0.98 16 22 C -0.06 -0.97 6.31 -39.56 -0.25 -1.22 16 23 Cl -0.06 -0.96 28.95 -51.86 -1.50 -2.46 16 24 C -0.07 -0.97 9.82 -39.48 -0.39 -1.35 16 25 C -0.16 -2.18 10.01 -39.57 -0.40 -2.58 16 26 C 0.14 2.39 7.27 -38.96 -0.28 2.11 16 27 F -0.13 -2.24 16.61 2.25 0.04 -2.21 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.04 0.81 4.69 -51.93 -0.24 0.57 16 30 H 0.03 0.61 7.39 -51.93 -0.38 0.23 16 31 H 0.09 1.64 7.49 -51.93 -0.39 1.25 16 32 H 0.09 1.36 7.84 -51.93 -0.41 0.95 16 33 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.19 4.13 5.14 -52.49 -0.27 3.86 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -29.52 353.50 -8.65 -38.17 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.78 Total: 6.71 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -4.39 Total: -3.43 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.24 Total: -43.96 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.67 Total: 14.10 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.52 -8.65 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069848204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.246 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds