Wall clock time and date at job start Tue Mar 31 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48492 * 109.47399 * 269.99894 * 3 2 1 5 5 H 1.48504 * 109.47233 * 30.00538 * 3 2 1 6 6 H 1.48510 * 109.46922 * 150.00135 * 3 2 1 7 7 C 1.37877 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00018 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99761 * 179.97438 * 7 2 1 10 10 S 1.81394 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.76197 * 103.00247 * 180.02562 * 10 9 7 12 12 C 1.38726 * 120.10124 * 359.97438 * 11 10 9 13 13 C 1.38244 * 119.99532 * 180.02562 * 12 11 10 14 14 C 1.38271 * 120.19721 * 0.02562 * 13 12 11 15 15 C 1.38287 * 120.20399 * 359.97438 * 14 13 12 16 16 C 1.38642 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.40010 * 120.09399 * 180.02562 * 16 15 14 18 18 S 1.65598 * 120.00306 * 35.52239 * 17 16 15 19 19 O 1.42100 * 106.40319 * 173.96717 * 18 17 16 20 20 O 1.42103 * 106.40367 * 306.88451 * 18 17 16 21 21 C 1.76194 * 107.21872 * 60.42517 * 18 17 16 22 22 C 1.38243 * 120.00120 * 269.72898 * 21 18 17 23 23 C 1.38235 * 119.99952 * 179.76657 * 22 21 18 24 24 C 1.38239 * 120.00069 * 0.50071 * 23 22 21 25 25 C 1.38236 * 119.99677 * 359.75146 * 24 23 22 26 26 C 1.38234 * 120.00518 * 359.97438 * 25 24 23 27 27 H 0.96999 * 119.99928 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47028 * 59.99393 * 9 7 2 29 29 H 1.09001 * 109.47259 * 299.99981 * 9 7 2 30 30 H 1.07999 * 120.00468 * 0.02562 * 12 11 10 31 31 H 1.08007 * 119.90203 * 180.02562 * 13 12 11 32 32 H 1.08004 * 119.89770 * 179.71831 * 14 13 12 33 33 H 1.07999 * 119.99585 * 179.97438 * 15 14 13 34 34 H 0.97000 * 119.99716 * 215.53133 * 17 16 15 35 35 H 1.07996 * 119.99696 * 359.97438 * 22 21 18 36 36 H 1.07999 * 120.00151 * 180.23050 * 23 22 21 37 37 H 1.07995 * 120.00245 * 179.72202 * 24 23 22 38 38 H 1.07998 * 119.99860 * 179.97438 * 25 24 23 39 39 H 1.07991 * 120.00157 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 6 5.8669 -2.7057 -0.0009 12 6 6.4230 -1.4348 -0.0015 13 6 7.7969 -1.2815 -0.0020 14 6 8.6206 -2.3922 -0.0025 15 6 8.0751 -3.6629 -0.0019 16 6 6.6983 -3.8262 -0.0014 17 7 6.1438 -5.1118 -0.0002 18 16 6.8879 -6.3338 0.8338 19 8 6.0202 -7.4566 0.7596 20 8 8.2361 -6.3625 0.3857 21 6 6.9370 -5.8541 2.5285 22 6 8.0203 -5.1466 3.0155 23 6 8.0566 -4.7661 4.3439 24 6 7.0144 -5.1019 5.1878 25 6 5.9336 -5.8138 4.7020 26 6 5.8947 -6.1895 3.3722 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8745 -0.6800 -0.8911 30 1 5.7827 -0.5651 -0.0016 31 1 8.2283 -0.2913 -0.0021 32 1 9.6933 -2.2668 -0.0075 33 1 8.7215 -4.5280 -0.0026 34 1 5.3239 -5.2868 -0.4880 35 1 8.8366 -4.8884 2.3573 36 1 8.9011 -4.2102 4.7236 37 1 7.0448 -4.8086 6.2267 38 1 5.1196 -6.0766 5.3613 39 1 5.0505 -6.7460 2.9929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069869897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:17 Heat of formation + Delta-G solvation = -18.668830 kcal Electronic energy + Delta-G solvation = -25549.555315 eV Core-core repulsion = 21868.301223 eV Total energy + Delta-G solvation = -3681.254092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.059 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.41208 -39.19623 -37.41780 -36.08457 -35.07647 -33.21543 -31.54285 -31.27362 -31.03788 -29.45692 -28.98221 -23.47411 -23.25624 -23.06291 -22.79198 -21.95254 -19.68186 -18.50808 -18.07376 -17.52145 -17.00987 -16.70280 -16.24926 -15.77963 -15.29519 -14.84214 -14.79098 -14.63659 -14.33919 -13.82118 -13.67667 -13.55302 -13.40421 -13.23560 -12.87970 -12.61821 -12.56003 -12.47621 -12.30648 -12.16838 -11.77680 -11.50336 -11.29807 -11.00294 -10.94260 -10.78915 -10.46178 -10.31525 -9.83133 -9.65666 -9.47469 -9.31278 -9.24919 -8.83798 -8.43109 -6.82625 -6.31910 -4.36393 0.09498 0.61632 1.09009 1.37112 1.42014 2.15945 2.72769 3.11087 3.17739 3.18897 3.26046 3.33831 3.57075 3.75907 4.13359 4.18189 4.59471 4.65946 4.74104 4.88869 4.99017 5.03584 5.07766 5.11840 5.20724 5.44811 5.46384 5.60956 5.69273 5.79861 5.84192 5.98967 6.07514 6.12038 6.26537 6.35929 6.44843 6.46127 6.59608 6.60024 6.76061 7.06210 7.23801 8.13176 8.68098 9.22527 10.79717 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003640 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.048003 B = 7690.582341 C = 8078.572986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.028 3.972 10 S -0.116 6.116 11 C -0.092 4.092 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.158 4.158 16 C 0.159 3.841 17 N -1.045 6.045 18 S 2.694 3.306 19 O -0.952 6.952 20 O -0.952 6.952 21 C -0.673 4.673 22 C -0.015 4.015 23 C -0.142 4.142 24 C -0.062 4.062 25 C -0.140 4.140 26 C -0.013 4.013 27 H 0.270 0.730 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.430 0.570 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.271 -7.868 6.956 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.121 4.121 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.103 0.897 9 C -0.120 4.120 10 S 0.132 5.868 11 C -0.209 4.209 12 C -0.142 4.142 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.180 4.180 16 C 0.056 3.944 17 N -0.796 5.796 18 S 2.786 3.214 19 O -0.942 6.942 20 O -0.942 6.942 21 C -0.761 4.761 22 C -0.034 4.034 23 C -0.161 4.161 24 C -0.080 4.080 25 C -0.159 4.159 26 C -0.032 4.032 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.177 0.823 34 H 0.269 0.731 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.705 -9.579 6.683 21.211 hybrid contribution 0.432 2.663 0.409 2.729 sum 18.138 -6.916 7.092 20.666 Atomic orbital electron populations 1.69850 1.06153 1.27535 1.48708 1.24823 0.94751 0.98724 0.93847 0.86836 0.80347 0.83581 0.78992 1.19665 1.20608 1.19000 1.20380 0.86430 0.95534 1.53725 0.89663 1.21761 1.01503 0.88802 0.99904 1.85355 0.92996 1.18633 1.89836 1.22114 0.99521 0.94962 1.04350 1.21224 0.95788 0.95794 1.01430 1.21081 0.93059 0.98844 1.00375 1.20898 0.99649 0.91576 1.01284 1.21777 0.92676 1.00217 1.03371 1.16820 0.91277 0.82525 1.03796 1.53250 1.41042 1.21376 1.63945 1.01983 0.73672 0.72106 0.73616 1.93606 1.66743 1.47157 1.86675 1.93515 1.35240 1.85555 1.79868 1.30716 1.03945 1.16524 1.24947 1.20973 0.95164 0.90977 0.96283 1.21283 0.99608 1.01397 0.93821 1.21520 0.92843 0.93750 0.99892 1.21316 0.99062 0.99715 0.95791 1.20967 0.95447 0.93264 0.93535 0.92000 0.93840 0.94271 0.85207 0.85900 0.85562 0.82299 0.73092 0.84248 0.85024 0.85210 0.84839 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 7 C -0.52 -14.10 9.68 -34.44 -0.33 -14.43 16 8 H 0.09 2.52 7.96 -52.49 -0.42 2.10 16 9 C 0.03 0.64 3.16 36.01 0.11 0.75 16 10 S -0.12 -2.28 20.74 -107.50 -2.23 -4.51 16 11 C -0.09 -1.56 6.12 -38.92 -0.24 -1.79 16 12 C -0.12 -1.85 9.36 -39.40 -0.37 -2.22 16 13 C -0.11 -1.44 10.04 -39.57 -0.40 -1.84 16 14 C -0.11 -1.31 10.04 -39.55 -0.40 -1.71 16 15 C -0.16 -2.07 8.54 -39.41 -0.34 -2.41 16 16 C 0.16 2.36 6.26 -83.49 -0.52 1.84 16 17 N -1.05 -14.43 5.47 32.54 0.18 -14.26 16 18 S 2.69 35.65 5.52 -107.50 -0.59 35.06 16 19 O -0.95 -14.45 17.28 -57.17 -0.99 -15.44 16 20 O -0.95 -13.35 14.24 -57.17 -0.81 -14.17 16 21 C -0.67 -8.35 5.81 -39.58 -0.23 -8.58 16 22 C -0.01 -0.16 9.37 -39.58 -0.37 -0.53 16 23 C -0.14 -1.36 10.05 -39.58 -0.40 -1.76 16 24 C -0.06 -0.57 10.05 -39.58 -0.40 -0.96 16 25 C -0.14 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.01 -0.15 9.52 -39.58 -0.38 -0.53 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.04 0.97 6.81 -51.92 -0.35 0.62 16 29 H 0.04 0.86 7.18 -51.92 -0.37 0.49 16 30 H 0.13 2.13 5.88 -52.49 -0.31 1.82 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.16 1.97 5.15 -52.49 -0.27 1.70 16 34 H 0.43 5.71 8.13 -34.47 -0.28 5.43 16 35 H 0.14 1.37 7.00 -52.49 -0.37 1.00 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.14 1.54 7.62 -52.49 -0.40 1.14 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -32.34 353.24 -11.82 -44.16 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.05 Total: 7.30 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: -4.75 Total: -33.79 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.95 Total: -39.24 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.80 Total: -29.60 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Atomic # 16 Polarization: 33.38 SS G_CDS: -2.82 Total: 30.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.34 -11.82 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069869897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.489 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds