Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48492 * 109.47399 * 269.99894 * 3 2 1 5 5 H 1.48504 * 109.47233 * 30.00538 * 3 2 1 6 6 H 1.48510 * 109.46922 * 150.00135 * 3 2 1 7 7 C 1.37877 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00018 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99761 * 179.97438 * 7 2 1 10 10 S 1.81394 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.76197 * 103.00247 * 180.02562 * 10 9 7 12 12 C 1.38726 * 120.10124 * 359.97438 * 11 10 9 13 13 C 1.38244 * 119.99532 * 180.02562 * 12 11 10 14 14 C 1.38271 * 120.19721 * 0.02562 * 13 12 11 15 15 C 1.38287 * 120.20399 * 359.97438 * 14 13 12 16 16 C 1.38642 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.40010 * 120.09399 * 180.02562 * 16 15 14 18 18 S 1.65598 * 120.00306 * 35.52239 * 17 16 15 19 19 O 1.42100 * 106.40319 * 173.96717 * 18 17 16 20 20 O 1.42103 * 106.40367 * 306.88451 * 18 17 16 21 21 C 1.76194 * 107.21872 * 60.42517 * 18 17 16 22 22 C 1.38243 * 120.00120 * 269.72898 * 21 18 17 23 23 C 1.38235 * 119.99952 * 179.76657 * 22 21 18 24 24 C 1.38239 * 120.00069 * 0.50071 * 23 22 21 25 25 C 1.38236 * 119.99677 * 359.75146 * 24 23 22 26 26 C 1.38234 * 120.00518 * 359.97438 * 25 24 23 27 27 H 0.96999 * 119.99928 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47028 * 59.99393 * 9 7 2 29 29 H 1.09001 * 109.47259 * 299.99981 * 9 7 2 30 30 H 1.07999 * 120.00468 * 0.02562 * 12 11 10 31 31 H 1.08007 * 119.90203 * 180.02562 * 13 12 11 32 32 H 1.08004 * 119.89770 * 179.71831 * 14 13 12 33 33 H 1.07999 * 119.99585 * 179.97438 * 15 14 13 34 34 H 0.97000 * 119.99716 * 215.53133 * 17 16 15 35 35 H 1.07996 * 119.99696 * 359.97438 * 22 21 18 36 36 H 1.07999 * 120.00151 * 180.23050 * 23 22 21 37 37 H 1.07995 * 120.00245 * 179.72202 * 24 23 22 38 38 H 1.07998 * 119.99860 * 179.97438 * 25 24 23 39 39 H 1.07991 * 120.00157 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 6 5.8669 -2.7057 -0.0009 12 6 6.4230 -1.4348 -0.0015 13 6 7.7969 -1.2815 -0.0020 14 6 8.6206 -2.3922 -0.0025 15 6 8.0751 -3.6629 -0.0019 16 6 6.6983 -3.8262 -0.0014 17 7 6.1438 -5.1118 -0.0002 18 16 6.8879 -6.3338 0.8338 19 8 6.0202 -7.4566 0.7596 20 8 8.2361 -6.3625 0.3857 21 6 6.9370 -5.8541 2.5285 22 6 8.0203 -5.1466 3.0155 23 6 8.0566 -4.7661 4.3439 24 6 7.0144 -5.1019 5.1878 25 6 5.9336 -5.8138 4.7020 26 6 5.8947 -6.1895 3.3722 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8745 -0.6800 -0.8911 30 1 5.7827 -0.5651 -0.0016 31 1 8.2283 -0.2913 -0.0021 32 1 9.6933 -2.2668 -0.0075 33 1 8.7215 -4.5280 -0.0026 34 1 5.3239 -5.2868 -0.4880 35 1 8.8366 -4.8884 2.3573 36 1 8.9011 -4.2102 4.7236 37 1 7.0448 -4.8086 6.2267 38 1 5.1196 -6.0766 5.3613 39 1 5.0505 -6.7460 2.9929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069869897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = -38.827971 kcal Electronic energy + Delta-G solvation = -25550.429481 eV Core-core repulsion = 21868.301223 eV Total energy + Delta-G solvation = -3682.128258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.059 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.45576 -40.02333 -38.53004 -37.20086 -36.17271 -35.24943 -32.38958 -32.25843 -32.01171 -31.29951 -30.06292 -25.01932 -24.31054 -24.04578 -23.68614 -23.26348 -20.70909 -19.64481 -19.21839 -18.93344 -18.45375 -17.92990 -17.08382 -16.77510 -16.69818 -16.10206 -15.81696 -15.71544 -15.56485 -15.10236 -14.98812 -14.87264 -14.50763 -14.36152 -14.26141 -14.05734 -13.64265 -13.44238 -13.33576 -13.32045 -13.07661 -12.72328 -12.36583 -12.33684 -12.24755 -12.16385 -11.90176 -11.75609 -11.55228 -10.98415 -10.92761 -10.64044 -10.44358 -10.04322 -9.52297 -8.41148 -8.28232 -6.52377 -0.92852 -0.22465 0.25606 0.31212 0.34169 0.70977 1.32715 1.34069 1.44089 1.69450 1.76795 2.26278 2.34339 2.65629 2.69580 2.92039 3.12720 3.77134 3.87917 3.89559 3.92772 4.08962 4.17034 4.37440 4.39919 4.42960 4.51249 4.55693 4.64511 4.68853 4.76374 4.93260 5.02372 5.05914 5.20263 5.25446 5.27862 5.36602 5.37029 5.56101 5.69482 5.85840 6.00818 6.01070 6.51643 7.10928 8.74345 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003640 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.048003 B = 7690.582341 C = 8078.572986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.242 1.242 7 C -0.534 4.534 8 H 0.040 0.960 9 C 0.036 3.964 10 S -0.146 6.146 11 C -0.113 4.113 12 C -0.130 4.130 13 C -0.107 4.107 14 C -0.091 4.091 15 C -0.162 4.162 16 C 0.157 3.843 17 N -1.050 6.050 18 S 2.706 3.294 19 O -0.978 6.978 20 O -0.960 6.960 21 C -0.685 4.685 22 C -0.029 4.029 23 C -0.143 4.143 24 C -0.060 4.060 25 C -0.148 4.148 26 C -0.039 4.039 27 H 0.274 0.726 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.429 0.571 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.368 -6.005 8.236 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.573 4.573 8 H 0.058 0.942 9 C -0.112 4.112 10 S 0.099 5.901 11 C -0.230 4.230 12 C -0.155 4.155 13 C -0.128 4.128 14 C -0.112 4.112 15 C -0.184 4.184 16 C 0.055 3.945 17 N -0.799 5.799 18 S 2.801 3.199 19 O -0.969 6.969 20 O -0.951 6.951 21 C -0.776 4.776 22 C -0.048 4.048 23 C -0.162 4.162 24 C -0.078 4.078 25 C -0.167 4.167 26 C -0.058 4.058 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.174 0.826 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.267 0.733 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 21.837 -7.738 7.934 24.488 hybrid contribution -0.734 1.967 0.074 2.101 sum 21.103 -5.771 8.008 23.297 Atomic orbital electron populations 1.70007 1.08271 1.28878 1.50284 1.25840 0.95612 1.03085 0.93073 0.85700 0.79711 0.77891 0.79748 1.18550 1.20225 1.16483 1.20581 0.89002 0.94099 1.53587 0.94202 1.21479 0.98478 0.91046 1.00240 1.85311 0.96862 1.16541 1.91376 1.21980 0.96877 0.96442 1.07726 1.21340 0.97378 0.94793 1.02008 1.21431 0.91571 1.00871 0.98904 1.21405 1.01690 0.90281 0.97853 1.22015 0.91674 1.01547 1.03176 1.16999 0.91937 0.82109 1.03470 1.53294 1.41021 1.21338 1.64284 1.01422 0.73000 0.71525 0.73921 1.93566 1.67455 1.48557 1.87318 1.93484 1.35367 1.85693 1.80511 1.30476 1.05160 1.18177 1.23779 1.21259 0.94999 0.91003 0.97539 1.21714 1.00567 1.00796 0.93078 1.21977 0.91938 0.92378 1.01502 1.21657 1.00250 0.99539 0.95273 1.21148 0.95636 0.94330 0.94734 0.91718 0.93280 0.93476 0.86139 0.82577 0.81371 0.81435 0.73303 0.83096 0.81913 0.81938 0.82912 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 2 C 0.02 1.38 5.47 84.65 0.46 1.84 16 3 Si 0.95 40.95 27.47 68.60 1.88 42.83 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 7 C -0.53 -30.09 9.68 25.60 0.25 -29.84 16 8 H 0.04 2.53 7.96 -2.91 -0.02 2.51 16 9 C 0.04 1.63 3.16 71.24 0.23 1.86 16 10 S -0.15 -5.96 20.74 -56.49 -1.17 -7.13 16 11 C -0.11 -3.76 6.12 22.70 0.14 -3.62 16 12 C -0.13 -3.84 9.36 22.39 0.21 -3.63 16 13 C -0.11 -2.28 10.04 22.28 0.22 -2.05 16 14 C -0.09 -1.71 10.04 22.29 0.22 -1.48 16 15 C -0.16 -3.79 8.54 22.38 0.19 -3.60 16 16 C 0.16 4.53 6.26 38.24 0.24 4.77 16 17 N -1.05 -29.50 5.47 -50.95 -0.28 -29.78 16 18 S 2.71 72.44 5.52 -56.49 -0.31 72.13 16 19 O -0.98 -31.05 17.28 -128.00 -2.21 -33.26 16 20 O -0.96 -26.25 14.24 -128.00 -1.82 -28.07 16 21 C -0.69 -16.72 5.81 22.27 0.13 -16.59 16 22 C -0.03 -0.58 9.37 22.27 0.21 -0.37 16 23 C -0.14 -2.28 10.05 22.27 0.22 -2.06 16 24 C -0.06 -0.92 10.05 22.27 0.22 -0.70 16 25 C -0.15 -2.81 10.05 22.27 0.22 -2.59 16 26 C -0.04 -0.93 9.52 22.27 0.21 -0.72 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.05 2.17 6.81 -2.39 -0.02 2.15 16 29 H 0.05 2.06 7.18 -2.39 -0.02 2.04 16 30 H 0.12 3.73 5.88 -2.91 -0.02 3.71 16 31 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.17 3.69 5.15 -2.91 -0.01 3.68 16 34 H 0.43 12.09 8.13 -96.75 -0.79 11.30 16 35 H 0.15 2.57 7.00 -2.91 -0.02 2.55 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.14 3.20 7.62 -2.92 -0.02 3.17 16 Total: -1.00 -73.49 353.24 0.03 -73.46 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.26 Total: 24.75 kcal Atomic # 6 Polarization: -62.15 SS G_CDS: 3.38 Total: -58.77 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: 0.02 Total: -85.93 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -4.04 Total: -61.34 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.88 Total: 42.83 kcal Atomic # 16 Polarization: 66.48 SS G_CDS: -1.48 Total: 65.00 kcal Total: -73.49 0.03 -73.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069869897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.630 kcal (2) G-P(sol) polarization free energy of solvation -73.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds