Wall clock time and date at job start Tue Mar 31 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 O 1.42904 * 109.46972 * 180.02562 * 21 19 18 23 23 C 1.42896 * 114.00022 * 180.02562 * 22 21 19 24 24 C 1.53002 * 109.47066 * 269.99915 * 23 22 21 25 25 C 1.52997 * 109.47530 * 179.97438 * 24 23 22 26 26 C 1.53006 * 109.46784 * 60.00224 * 25 24 23 27 27 C 1.53002 * 109.46904 * 300.00159 * 26 25 24 28 28 C 1.52991 * 109.47158 * 59.99962 * 27 26 25 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 35 35 H 1.07998 * 120.32288 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 38 38 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 39 39 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 40 40 H 1.09004 * 109.47490 * 29.99574 * 23 22 21 41 41 H 1.09000 * 109.47386 * 300.00298 * 24 23 22 42 42 H 1.09007 * 109.47355 * 60.00240 * 24 23 22 43 43 H 1.09000 * 109.47345 * 300.00710 * 25 24 23 44 44 H 1.08998 * 109.47398 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47195 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.46783 * 60.00142 * 26 25 24 47 47 H 1.08995 * 109.46945 * 299.99767 * 27 26 25 48 48 H 1.09005 * 109.46629 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.47026 * 179.97438 * 28 27 26 50 50 H 1.09004 * 109.47486 * 60.00288 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 8 -2.2558 -10.0266 0.0380 23 6 -3.6717 -10.2194 0.0463 24 6 -4.1691 -10.2837 1.4918 25 6 -5.6852 -10.4895 1.5008 26 6 -6.0264 -11.7982 0.7853 27 6 -5.5289 -11.7339 -0.6602 28 6 -4.0130 -11.5280 -0.6691 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 4.1698 -5.0282 -0.0013 35 1 5.4519 -7.1576 -0.0016 36 1 4.2407 -9.2968 0.0000 37 1 -0.2758 -6.5552 0.0166 38 1 -2.2425 -8.1597 0.9225 39 1 -2.2529 -8.1643 -0.8574 40 1 -4.1546 -9.3881 -0.4674 41 1 -3.6862 -11.1149 2.0056 42 1 -3.9265 -9.3512 2.0015 43 1 -6.1678 -9.6581 0.9870 44 1 -6.0396 -10.5349 2.5305 45 1 -7.1065 -11.9451 0.7921 46 1 -5.5438 -12.6296 1.2990 47 1 -6.0115 -10.9025 -1.1738 48 1 -5.7724 -12.6661 -1.1700 49 1 -3.6585 -11.4826 -1.6988 50 1 -3.5303 -12.3595 -0.1554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069895398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:10 Heat of formation + Delta-G solvation = -96.644944 kcal Electronic energy + Delta-G solvation = -29724.058231 eV Core-core repulsion = 25523.301949 eV Total energy + Delta-G solvation = -4200.756281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.89270 -39.72908 -38.90898 -37.77937 -36.52911 -34.77706 -33.49492 -31.71200 -31.15292 -30.83015 -30.29015 -29.29362 -27.51791 -25.43316 -23.62521 -22.96463 -22.79082 -22.45998 -21.14603 -20.45078 -20.08072 -18.45272 -17.58372 -17.50929 -16.64436 -16.25463 -16.20199 -15.91525 -15.65529 -15.52424 -14.83845 -14.71304 -14.68155 -14.57775 -14.20034 -14.04861 -13.89360 -13.51367 -13.18656 -12.90992 -12.76045 -12.55840 -12.43043 -12.40449 -12.03984 -11.94168 -11.48782 -11.37985 -11.07036 -11.03058 -10.96312 -10.87289 -10.70522 -10.69439 -10.64406 -10.16925 -10.07209 -9.79244 -9.71782 -9.41561 -9.22934 -9.01255 -8.54666 -7.67947 -6.20269 -4.25052 1.19740 1.44188 2.52205 2.67993 3.20201 3.27482 3.30442 3.51160 3.60349 3.99971 4.30738 4.32210 4.37522 4.43688 4.61949 4.74191 4.82654 4.85270 4.94260 4.94675 4.96772 5.01733 5.10077 5.13567 5.15155 5.16815 5.25464 5.27490 5.45145 5.46132 5.62902 5.67118 5.76233 5.82556 5.84415 5.85601 5.88228 5.96449 6.04564 6.05230 6.17440 6.33147 6.51973 6.60108 6.88509 7.24189 7.32716 7.50251 7.62335 7.83281 8.06136 8.12268 8.34231 8.80410 9.40061 10.91206 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.002067 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.567619 B =13544.286210 C =16054.991309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.068 3.932 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.076 3.924 16 N -0.444 5.444 17 C 0.330 3.670 18 N -0.651 5.651 19 C 0.503 3.497 20 O -0.459 6.459 21 C 0.046 3.954 22 O -0.356 6.356 23 C 0.089 3.911 24 C -0.143 4.143 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.116 4.116 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.424 0.576 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -20.547 0.435 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.016 3.984 13 C -0.174 4.174 14 C -0.181 4.181 15 C -0.081 4.081 16 N -0.159 5.159 17 C 0.097 3.903 18 N -0.301 5.301 19 C 0.288 3.712 20 O -0.326 6.326 21 C -0.034 4.034 22 O -0.274 6.274 23 C 0.031 3.969 24 C -0.181 4.181 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.154 4.154 28 C -0.153 4.153 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.262 0.738 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.389 -22.143 0.433 23.348 hybrid contribution 0.722 2.651 0.048 2.748 sum -6.667 -19.492 0.481 20.606 Atomic orbital electron populations 1.69972 1.06096 1.26982 1.49632 1.24986 0.94928 0.99444 0.94804 0.86427 0.79993 0.83173 0.77776 1.19615 1.20799 1.20805 1.20987 0.93118 0.90114 1.52357 0.92267 1.19132 0.94140 0.88934 0.98882 1.23401 0.97257 0.80277 0.99870 1.86095 1.36253 1.12906 1.87605 1.19579 0.91145 0.87054 1.00599 1.21612 0.92217 1.00375 1.03227 1.21901 1.01218 0.92519 1.02427 1.22419 0.88759 0.97927 0.98984 1.67621 1.07944 1.26922 1.13444 1.17754 0.84601 0.86968 1.00946 1.43324 1.03893 1.10151 1.72772 1.20386 0.89664 0.83418 0.77762 1.90815 1.65467 1.33790 1.42542 1.22196 0.92380 0.85864 1.02959 1.88032 1.22111 1.22174 1.95117 1.22199 0.80762 0.98289 0.95641 1.22065 0.96046 1.02883 0.97125 1.21500 0.95314 0.97882 1.00807 1.21586 1.00726 0.97949 0.95794 1.21509 0.94849 1.02113 0.96935 1.21573 0.95904 0.96873 1.00995 0.92693 0.95336 0.95349 0.92913 0.92924 0.83699 0.84748 0.82577 0.73804 0.89982 0.89895 0.91896 0.90892 0.91676 0.91833 0.91605 0.91866 0.91763 0.91797 0.91377 0.91150 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -13.96 9.11 -34.44 -0.31 -14.28 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.28 4.70 37.16 0.17 1.45 16 11 O -0.32 -5.72 9.39 -19.66 -0.18 -5.90 16 12 C 0.07 1.12 6.72 -38.91 -0.26 0.86 16 13 C -0.15 -2.14 9.14 -39.17 -0.36 -2.50 16 14 C -0.16 -1.99 10.10 -39.44 -0.40 -2.39 16 15 C 0.08 1.05 11.17 -17.55 -0.20 0.85 16 16 N -0.44 -7.59 7.88 -12.22 -0.10 -7.69 16 17 C 0.33 5.51 7.45 -154.43 -1.15 4.36 16 18 N -0.65 -9.49 5.39 -11.29 -0.06 -9.56 16 19 C 0.50 7.47 7.87 -10.99 -0.09 7.38 16 20 O -0.46 -8.66 14.75 -14.35 -0.21 -8.87 16 21 C 0.05 0.50 6.23 36.01 0.22 0.72 16 22 O -0.36 -4.41 9.52 -55.14 -0.53 -4.93 16 23 C 0.09 0.80 2.61 -26.73 -0.07 0.73 16 24 C -0.14 -1.17 5.54 -26.73 -0.15 -1.32 16 25 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 26 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 27 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 28 C -0.12 -0.95 5.57 -26.74 -0.15 -1.10 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 33 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 34 H 0.15 1.94 6.44 -52.49 -0.34 1.60 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.42 5.29 8.04 -40.82 -0.33 4.96 16 38 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 39 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.52 7.87 -51.92 -0.41 0.11 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -33.21 409.07 -10.80 -44.01 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.14 Total: 1.75 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.45 Total: -5.90 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.58 Total: -41.83 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.92 Total: -19.71 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.21 -10.80 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069895398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.634 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds