Wall clock time and date at job start Tue Mar 31 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50710 * 109.46944 * 2 1 4 4 N 1.29936 * 126.28703 * 89.97962 * 3 2 1 5 5 O 1.21298 * 110.25026 * 179.97438 * 4 3 2 6 6 C 1.33641 * 109.81327 * 359.97438 * 5 4 3 7 7 C 1.50693 * 126.55408 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47404 * 165.00567 * 7 6 5 9 9 C 1.53005 * 109.47183 * 285.00787 * 7 6 5 10 10 N 1.46906 * 109.46934 * 45.00355 * 7 6 5 11 11 C 1.46957 * 110.99862 * 179.97438 * 10 7 6 12 12 C 1.53047 * 109.36801 * 176.81412 * 11 10 7 13 13 N 1.46962 * 109.36253 * 58.39892 * 12 11 10 14 14 C 1.46898 * 110.99936 * 176.81494 * 13 12 11 15 15 C 1.53007 * 109.47374 * 308.14947 * 14 13 12 16 16 H 1.09005 * 109.46940 * 58.17769 * 15 14 13 17 17 C 1.47196 * 109.46976 * 298.18296 * 15 14 13 18 18 N 9.80629 * 157.96786 * 98.89763 * 3 1 2 19 19 C 1.52994 * 109.47187 * 178.17700 * 15 14 13 20 20 C 1.50707 * 109.47088 * 184.99856 * 19 15 14 21 21 H 1.08005 * 119.99778 * 0.02562 * 20 19 15 22 22 C 1.37871 * 120.00255 * 180.02562 * 20 19 15 23 23 N 1.31518 * 119.99747 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00160 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47155 * 90.00118 * 24 22 20 26 26 H 1.48504 * 109.47231 * 210.00023 * 24 22 20 27 27 H 1.48496 * 109.47344 * 330.00263 * 24 22 20 28 28 C 1.46957 * 110.88146 * 300.68323 * 13 12 11 29 29 C 1.46950 * 110.99800 * 56.13068 * 10 7 6 30 30 N 1.31134 * 106.89607 * 359.97438 * 6 5 4 31 31 H 1.08996 * 109.46739 * 300.00083 * 1 2 3 32 32 H 1.08997 * 109.47272 * 59.99857 * 1 2 3 33 33 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46990 * 240.00383 * 2 1 3 35 35 H 1.08997 * 109.47272 * 120.00143 * 2 1 3 36 36 H 1.09000 * 109.47130 * 59.99612 * 9 7 6 37 37 H 1.08997 * 109.47318 * 179.97438 * 9 7 6 38 38 H 1.08998 * 109.47123 * 300.00054 * 9 7 6 39 39 H 1.09006 * 109.49157 * 296.78490 * 11 10 7 40 40 H 1.09008 * 109.49069 * 56.84461 * 11 10 7 41 41 H 1.09004 * 109.48866 * 298.43496 * 12 11 10 42 42 H 1.08996 * 109.49200 * 178.36832 * 12 11 10 43 43 H 1.08998 * 109.47249 * 68.14928 * 14 13 12 44 44 H 1.08999 * 109.47137 * 188.15039 * 14 13 12 45 45 H 1.08988 * 109.47499 * 305.00060 * 19 15 14 46 46 H 1.09003 * 109.46715 * 65.00701 * 19 15 14 47 47 H 0.97000 * 119.99860 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.48798 * 299.35099 * 28 13 12 49 49 H 1.08997 * 109.48563 * 179.28486 * 28 13 12 50 50 H 1.08998 * 109.49159 * 303.15076 * 29 10 7 51 51 H 1.09001 * 109.49365 * 63.19803 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2883 2.1461 1.0474 5 8 2.6775 3.2450 0.7123 6 6 2.7081 3.3275 -0.6212 7 6 3.1310 4.5218 -1.4371 8 1 3.3055 4.2143 -2.4681 9 6 2.0274 5.5810 -1.4006 10 7 4.3677 5.0839 -0.8777 11 6 4.8114 6.2527 -1.6500 12 6 6.0542 6.8550 -0.9904 13 7 7.1127 5.8376 -0.9253 14 6 8.3493 6.3996 -0.3660 15 6 8.7201 7.6742 -1.1268 16 1 7.9007 8.3898 -1.0579 17 6 8.9682 7.3473 -2.5404 18 7 9.1563 7.0959 -3.6343 19 6 9.9827 8.2843 -0.5151 20 6 10.2783 9.6024 -1.1833 21 1 9.6300 9.9685 -1.9657 22 6 11.3762 10.3409 -0.7958 23 7 12.1658 9.8948 0.1566 24 14 11.7421 11.9750 -1.6235 25 1 11.0578 13.0675 -0.8862 26 1 13.2074 12.2158 -1.6174 27 1 11.2518 11.9408 -3.0248 28 6 6.6690 4.6687 -0.1530 29 6 5.4258 4.0663 -0.8116 30 7 2.2999 2.1705 -1.0842 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.8529 5.8886 -0.3696 37 1 2.3335 6.4451 -1.9903 38 1 1.1098 5.1640 -1.8156 39 1 5.0525 5.9460 -2.6679 40 1 4.0152 6.9969 -1.6732 41 1 5.8061 7.1866 0.0179 42 1 6.4021 7.7047 -1.5777 43 1 8.1971 6.6363 0.6870 44 1 9.1551 5.6718 -0.4620 45 1 9.8287 8.4443 0.5519 46 1 10.8226 7.6055 -0.6633 47 1 12.9380 10.4145 0.4295 48 1 6.4279 4.9755 0.8648 49 1 7.4651 3.9246 -0.1299 50 1 5.0775 3.2170 -0.2238 51 1 5.6739 3.7335 -1.8195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069897579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:58 Heat of formation + Delta-G solvation = 99.783653 kcal Electronic energy + Delta-G solvation = -30522.576848 eV Core-core repulsion = 26460.349763 eV Total energy + Delta-G solvation = -4062.227085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.88045 -39.84098 -37.51515 -36.65604 -35.65636 -34.08686 -33.53573 -32.42729 -31.63265 -31.01651 -30.42095 -27.51945 -25.67915 -25.45255 -25.05342 -23.50195 -22.92480 -22.47234 -21.62274 -20.76823 -19.88589 -18.45265 -17.66030 -16.87729 -16.67630 -16.27527 -16.13402 -15.23260 -15.08778 -15.02502 -14.79479 -14.70948 -14.54397 -14.35183 -13.95063 -13.46627 -13.30479 -13.02659 -12.87291 -12.79100 -12.55151 -12.41282 -12.22052 -12.18049 -11.97284 -11.92584 -11.74180 -11.66262 -11.59321 -11.37315 -11.30078 -11.26771 -11.14356 -11.06127 -10.91526 -10.63056 -10.52513 -10.18640 -10.12592 -9.56379 -9.23756 -8.80770 -8.47365 -8.23111 -6.11204 -4.14593 0.83772 1.88224 2.47748 3.01460 3.27848 3.35124 3.39331 3.48647 3.68199 3.76831 3.78129 3.92142 4.34483 4.39662 4.50006 4.61046 4.67831 4.72772 4.75887 4.84561 4.92455 4.94212 5.09405 5.18328 5.19999 5.22416 5.26978 5.30209 5.32287 5.38517 5.41589 5.46470 5.55794 5.59098 5.62386 5.64520 5.69616 5.71337 5.81920 5.87527 5.94875 6.04370 6.34409 6.43838 6.52281 6.60032 7.09926 7.12127 7.40667 7.50390 7.83543 7.89333 8.20769 8.54432 8.89903 9.51023 10.99615 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.001892 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.982545 B =14794.815367 C =15039.714230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 C 0.167 3.833 4 N -0.386 5.386 5 O 0.095 5.905 6 C 0.197 3.803 7 C 0.174 3.826 8 H 0.090 0.910 9 C -0.149 4.149 10 N -0.532 5.532 11 C 0.057 3.943 12 C 0.049 3.951 13 N -0.543 5.543 14 C 0.064 3.936 15 C 0.006 3.994 16 H 0.102 0.898 17 C 0.254 3.746 18 N -0.477 5.477 19 C 0.031 3.969 20 C -0.527 4.527 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.061 3.939 29 C 0.058 3.942 30 N -0.482 5.482 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.026 0.974 47 H 0.262 0.738 48 H 0.047 0.953 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.759 -15.625 1.794 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.105 4.105 4 N -0.092 5.092 5 O 0.036 5.964 6 C -0.024 4.024 7 C 0.063 3.937 8 H 0.107 0.893 9 C -0.207 4.207 10 N -0.258 5.258 11 C -0.070 4.070 12 C -0.079 4.079 13 N -0.268 5.268 14 C -0.065 4.065 15 C -0.016 4.016 16 H 0.120 0.880 17 C -0.063 4.063 18 N -0.154 5.154 19 C -0.007 4.007 20 C -0.565 4.565 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.529 5.529 24 Si 0.719 3.281 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.067 4.067 29 C -0.070 4.070 30 N -0.217 5.217 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -23.518 -16.575 0.757 28.782 hybrid contribution 0.400 1.101 0.017 1.172 sum -23.118 -15.473 0.774 27.829 Atomic orbital electron populations 1.21734 0.93278 1.02841 1.02657 1.19932 0.96818 0.85662 1.04716 1.25881 1.00644 1.00521 0.83499 1.74667 1.17460 0.93076 1.23996 1.85364 1.59916 1.26646 1.24469 1.28555 0.95537 0.96010 0.82325 1.20118 0.92378 0.87395 0.93765 0.89292 1.21961 0.96461 0.97873 1.04374 1.62261 1.02861 1.08115 1.52611 1.22305 0.97302 0.91826 0.95554 1.22288 0.90039 0.94867 1.00685 1.62248 1.04390 1.07494 1.52684 1.22239 0.91282 0.96095 0.96843 1.19341 1.03311 0.96006 0.82951 0.88043 1.28922 0.91446 0.91397 0.94552 1.81077 1.10671 1.10662 1.12981 1.19171 0.89291 0.95691 0.96564 1.21124 1.10792 1.04303 1.20253 0.92523 1.24950 0.95950 0.98084 0.94969 1.69938 1.15556 1.38431 1.28999 0.86593 0.77544 0.83932 0.80023 1.20475 1.21158 1.19861 1.22065 0.95610 0.93552 0.95516 1.22190 0.91020 0.93427 1.00407 1.71896 1.18480 1.01697 1.29584 0.92322 0.92006 0.91002 0.88611 0.89050 0.90536 0.89914 0.91313 0.93287 0.89280 0.93144 0.89064 0.92683 0.89987 0.94400 0.95523 0.92787 0.93462 0.90084 0.91449 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.03 -0.22 6.56 -27.88 -0.18 -0.41 16 3 C 0.17 1.75 7.47 -156.38 -1.17 0.58 16 4 N -0.39 -4.55 12.16 30.89 0.38 -4.17 16 5 O 0.10 1.10 11.12 18.11 0.20 1.30 16 6 C 0.20 2.00 5.65 -13.06 -0.07 1.93 16 7 C 0.17 1.45 2.62 -68.86 -0.18 1.27 16 8 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 9 C -0.15 -0.94 8.95 37.16 0.33 -0.61 16 10 N -0.53 -5.01 4.57 -227.88 -1.04 -6.06 16 11 C 0.06 0.54 5.32 -3.77 -0.02 0.52 16 12 C 0.05 0.56 5.10 -3.77 -0.02 0.54 16 13 N -0.54 -6.94 4.44 -234.47 -1.04 -7.98 16 14 C 0.06 0.91 4.54 -3.82 -0.02 0.89 16 15 C 0.01 0.10 1.75 -93.41 -0.16 -0.06 16 16 H 0.10 1.65 6.14 -51.93 -0.32 1.33 16 17 C 0.25 5.11 13.42 -20.69 -0.28 4.83 16 18 N -0.48 -10.52 18.55 42.24 0.78 -9.74 16 19 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 20 C -0.53 -13.73 8.60 -34.44 -0.30 -14.03 16 21 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 24 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.06 0.68 5.61 -3.77 -0.02 0.65 16 29 C 0.06 0.60 5.34 -3.77 -0.02 0.58 16 30 N -0.48 -5.29 11.55 -9.88 -0.11 -5.40 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.43 6.33 -51.93 -0.33 0.10 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.65 6.14 -51.92 -0.32 0.34 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.10 5.83 -51.93 -0.30 0.80 16 43 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.04 0.87 8.14 -51.94 -0.42 0.44 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.07 0.72 6.72 -51.93 -0.35 0.37 16 51 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 412.70 15.07 6.22 6.22 Total: -1.00 -31.33 412.70 -9.20 -40.53 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -8.34 Total: -4.64 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.96 Total: -1.59 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.30 Total: -57.81 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.33 -9.20 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069897579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.309 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds