Wall clock time and date at job start Tue Mar 31 2020 05:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47258 * 2 1 4 4 N 1.29948 * 126.28421 * 269.97119 * 3 2 1 5 5 O 1.21298 * 110.24809 * 179.72965 * 4 3 2 6 6 C 1.33647 * 109.81107 * 0.46480 * 5 4 3 7 7 C 1.50703 * 126.54951 * 179.80478 * 6 5 4 8 8 H 1.09000 * 109.46685 * 194.69032 * 7 6 5 9 9 C 1.52999 * 109.47082 * 74.69048 * 7 6 5 10 10 N 1.46903 * 109.47029 * 314.68718 * 7 6 5 11 11 C 1.46957 * 110.99878 * 180.02562 * 10 7 6 12 12 C 1.53051 * 109.36250 * 183.19110 * 11 10 7 13 13 N 1.46956 * 109.36581 * 301.59618 * 12 11 10 14 14 C 1.46895 * 111.00059 * 183.19045 * 13 12 11 15 15 C 1.52994 * 109.47270 * 170.00062 * 14 13 12 16 16 H 1.09009 * 109.47154 * 54.99975 * 15 14 13 17 17 C 1.47200 * 109.47451 * 295.00037 * 15 14 13 18 18 N 9.26365 * 158.03905 * 296.78461 * 3 1 2 19 19 C 1.52996 * 109.47347 * 174.99819 * 15 14 13 20 20 C 1.50702 * 109.47159 * 185.00014 * 19 15 14 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 15 22 22 C 1.37884 * 119.99942 * 179.72211 * 20 19 15 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00645 * 24 22 20 26 26 H 1.48504 * 109.46887 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47679 * 300.00280 * 24 22 20 28 28 C 1.46956 * 110.87500 * 59.32176 * 13 12 11 29 29 C 1.46957 * 111.00272 * 303.80403 * 10 7 6 30 30 N 1.31130 * 106.89740 * 359.54525 * 6 5 4 31 31 H 1.09000 * 109.47226 * 300.00309 * 1 2 3 32 32 H 1.09006 * 109.47099 * 60.00583 * 1 2 3 33 33 H 1.09006 * 109.47590 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47226 * 239.99691 * 2 1 3 35 35 H 1.09007 * 109.46805 * 120.00139 * 2 1 3 36 36 H 1.09006 * 109.46612 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47348 * 299.99578 * 9 7 6 38 38 H 1.08998 * 109.46926 * 60.00010 * 9 7 6 39 39 H 1.08993 * 109.48947 * 63.22258 * 11 10 7 40 40 H 1.09006 * 109.49126 * 303.15720 * 11 10 7 41 41 H 1.09010 * 109.48409 * 181.62862 * 12 11 10 42 42 H 1.08997 * 109.48820 * 61.57122 * 12 11 10 43 43 H 1.08998 * 109.47324 * 50.00063 * 14 13 12 44 44 H 1.09002 * 109.47421 * 290.00240 * 14 13 12 45 45 H 1.09004 * 109.47066 * 65.00217 * 19 15 14 46 46 H 1.08994 * 109.47405 * 305.00047 * 19 15 14 47 47 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 48 48 H 1.09007 * 109.48937 * 60.65000 * 28 13 12 49 49 H 1.09002 * 109.48568 * 180.70808 * 28 13 12 50 50 H 1.09003 * 109.48520 * 296.77730 * 29 10 7 51 51 H 1.08996 * 109.48913 * 56.84408 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2892 2.1457 -1.0475 5 8 2.6726 3.2466 -0.7124 6 6 2.7071 3.3278 0.6211 7 6 3.1296 4.5224 1.4369 8 1 3.3027 4.2151 2.4683 9 6 2.0266 5.5820 1.3987 10 7 4.3673 5.0834 0.8788 11 6 4.8106 6.2525 1.6511 12 6 6.0545 6.8537 0.9925 13 7 7.1126 5.8358 0.9292 14 6 8.3501 6.3969 0.3711 15 6 9.4910 5.3932 0.5493 16 1 9.2077 4.4386 0.1056 17 6 9.7606 5.2064 1.9843 18 7 9.9682 5.0640 3.0927 19 6 10.7492 5.9232 -0.1412 20 6 11.8366 4.8821 -0.0719 21 1 11.6489 3.9368 0.4155 22 6 13.0691 5.1340 -0.6363 23 7 13.2975 6.2850 -1.2302 24 14 14.4145 3.8406 -0.5572 25 1 13.9536 2.6046 -1.2392 26 1 15.6342 4.3532 -1.2317 27 1 14.7255 3.5359 0.8626 28 6 6.6691 4.6668 0.1569 29 6 5.4255 4.0657 0.8160 30 7 2.2977 2.1712 1.0841 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.3325 6.4462 1.9884 37 1 1.8535 5.8893 0.3673 38 1 1.1083 5.1656 1.8128 39 1 5.0503 5.9461 2.6692 40 1 4.0148 6.9971 1.6729 41 1 6.4021 7.7037 1.5799 42 1 5.8077 7.1850 -0.0162 43 1 8.5962 7.3227 0.8911 44 1 8.2097 6.6026 -0.6901 45 1 11.0834 6.8316 0.3601 46 1 10.5249 6.1454 -1.1844 47 1 14.1648 6.4624 -1.6269 48 1 6.4294 4.9733 -0.8613 49 1 7.4650 3.9223 0.1351 50 1 5.6721 3.7348 1.8249 51 1 5.0781 3.2156 0.2289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069897581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:01 Heat of formation + Delta-G solvation = 97.907532 kcal Electronic energy + Delta-G solvation = -30594.275574 eV Core-core repulsion = 26531.967134 eV Total energy + Delta-G solvation = -4062.308440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.84846 -39.81619 -37.44974 -36.62373 -35.69537 -34.07437 -33.51289 -32.39149 -31.42559 -31.39699 -30.25276 -27.50732 -25.90480 -25.42076 -24.68508 -23.49675 -23.05809 -22.40915 -21.63450 -20.76340 -19.87463 -18.42783 -17.63030 -16.84322 -16.62375 -16.29493 -16.22715 -15.22442 -15.06182 -14.97552 -14.78906 -14.61756 -14.54320 -14.34065 -14.03796 -13.42371 -13.16871 -12.95016 -12.87492 -12.85112 -12.71303 -12.35694 -12.21509 -12.17529 -11.98693 -11.90763 -11.72230 -11.63151 -11.51991 -11.38574 -11.28708 -11.21612 -11.10885 -11.04096 -10.96737 -10.63653 -10.53306 -10.19551 -10.09453 -9.54376 -9.24222 -8.81428 -8.45971 -8.24166 -6.10106 -4.13251 0.86843 1.91539 2.50064 3.02937 3.30776 3.35060 3.38722 3.50845 3.70878 3.80296 3.81183 3.92545 4.35582 4.40752 4.49514 4.61217 4.71009 4.74947 4.77766 4.85233 4.94414 4.95986 5.09748 5.16787 5.18054 5.22098 5.27932 5.30583 5.34080 5.38812 5.43994 5.49482 5.54653 5.60668 5.64940 5.66395 5.71584 5.73278 5.80399 5.87016 5.95373 6.04062 6.33179 6.46173 6.52778 6.59412 7.10964 7.11693 7.41769 7.51725 7.84769 7.92562 8.22425 8.57638 8.91030 9.52105 11.00674 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002214 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.503671 B =12642.816598 C =13843.831906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.168 3.832 4 N -0.385 5.385 5 O 0.096 5.904 6 C 0.195 3.805 7 C 0.174 3.826 8 H 0.089 0.911 9 C -0.148 4.148 10 N -0.532 5.532 11 C 0.057 3.943 12 C 0.058 3.942 13 N -0.544 5.544 14 C 0.064 3.936 15 C 0.010 3.990 16 H 0.099 0.901 17 C 0.256 3.744 18 N -0.480 5.480 19 C 0.032 3.968 20 C -0.527 4.527 21 H 0.056 0.944 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.277 1.277 28 C 0.055 3.945 29 C 0.057 3.943 30 N -0.482 5.482 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.026 0.974 46 H 0.037 0.963 47 H 0.263 0.737 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.049 0.951 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.922 -3.344 1.709 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.105 4.105 4 N -0.091 5.091 5 O 0.036 5.964 6 C -0.026 4.026 7 C 0.064 3.936 8 H 0.107 0.893 9 C -0.206 4.206 10 N -0.259 5.259 11 C -0.070 4.070 12 C -0.070 4.070 13 N -0.269 5.269 14 C -0.064 4.064 15 C -0.012 4.012 16 H 0.117 0.883 17 C -0.061 4.061 18 N -0.157 5.157 19 C -0.007 4.007 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.140 4.140 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.073 4.073 29 C -0.071 4.071 30 N -0.216 5.216 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.068 0.932 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.679 -4.063 2.767 28.112 hybrid contribution 0.926 -0.598 -0.429 1.183 sum -26.752 -4.660 2.338 27.256 Atomic orbital electron populations 1.21732 0.93303 1.02836 1.02605 1.19934 0.96774 0.85679 1.04792 1.25876 1.00615 1.00538 0.83469 1.74674 1.17478 0.92953 1.23968 1.85363 1.60091 1.26487 1.24438 1.28527 0.95672 0.96036 0.82364 1.20102 0.92302 0.87405 0.93813 0.89308 1.21954 0.96524 0.97820 1.04297 1.62275 1.02909 1.08178 1.52497 1.22282 0.97125 0.91980 0.95607 1.22121 0.90294 0.94355 1.00222 1.62203 1.04158 1.07470 1.53037 1.22216 0.87677 0.97738 0.98809 1.19256 0.97822 1.00441 0.83712 0.88334 1.28879 0.90650 0.92004 0.94523 1.81006 1.11299 1.09895 1.13516 1.19165 0.88672 0.97030 0.95797 1.21091 0.97002 1.01499 1.36876 0.92616 1.24951 0.98516 0.95475 0.95018 1.69928 1.23506 1.22543 1.36990 0.86657 0.81221 0.81839 0.78379 1.20073 1.21182 1.20231 1.22190 0.95757 0.93907 0.95454 1.22213 0.90920 0.93421 1.00526 1.71887 1.18375 1.01710 1.29606 0.92045 0.92333 0.91004 0.88998 0.88589 0.90047 0.90572 0.91308 0.93287 0.89434 0.89881 0.93506 0.90080 0.92579 0.95551 0.94436 0.92739 0.93267 0.89348 0.93231 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.03 -0.25 6.56 -27.89 -0.18 -0.43 16 3 C 0.17 1.83 7.47 -156.37 -1.17 0.66 16 4 N -0.38 -4.71 12.16 30.90 0.38 -4.34 16 5 O 0.10 1.13 11.14 18.09 0.20 1.33 16 6 C 0.20 2.03 5.64 -13.05 -0.07 1.96 16 7 C 0.17 1.43 2.62 -68.86 -0.18 1.25 16 8 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 9 C -0.15 -0.87 8.95 37.16 0.33 -0.54 16 10 N -0.53 -4.94 4.57 -227.88 -1.04 -5.98 16 11 C 0.06 0.48 5.32 -3.77 -0.02 0.46 16 12 C 0.06 0.58 5.61 -3.77 -0.02 0.56 16 13 N -0.54 -6.88 4.41 -234.47 -1.03 -7.92 16 14 C 0.06 0.91 4.32 -3.83 -0.02 0.90 16 15 C 0.01 0.17 2.14 -93.41 -0.20 -0.03 16 16 H 0.10 1.69 6.28 -51.92 -0.33 1.36 16 17 C 0.26 5.28 13.67 -20.74 -0.28 5.00 16 18 N -0.48 -10.79 18.54 42.18 0.78 -10.01 16 19 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 20 C -0.53 -13.94 8.60 -34.44 -0.30 -14.23 16 21 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 24 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.06 0.66 5.42 -3.77 -0.02 0.64 16 29 C 0.06 0.63 5.34 -3.77 -0.02 0.61 16 30 N -0.48 -5.46 11.55 -9.87 -0.11 -5.57 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.36 6.34 -51.93 -0.33 0.03 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.54 6.14 -51.93 -0.32 0.22 16 41 H 0.08 0.78 8.07 -51.92 -0.42 0.36 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 44 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 1.13 6.25 -51.93 -0.32 0.80 16 50 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.79 6.73 -51.93 -0.35 0.44 16 LS Contribution 413.78 15.07 6.24 6.24 Total: -1.00 -31.75 413.78 -9.24 -40.99 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -8.36 Total: -4.90 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.00 Total: -1.47 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.30 Total: -58.47 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.75 -9.24 -40.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069897581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.898 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds