Wall clock time and date at job start Tue Mar 31 2020 05:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46841 * 2 1 4 4 N 1.29942 * 126.28785 * 89.97271 * 3 2 1 5 5 O 1.21302 * 110.25066 * 179.97438 * 4 3 2 6 6 C 1.33650 * 109.81075 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.54890 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.46714 * 161.84549 * 7 6 5 9 9 C 1.52999 * 109.47370 * 281.84092 * 7 6 5 10 10 N 1.46894 * 109.47037 * 41.84567 * 7 6 5 11 11 C 1.46955 * 111.00069 * 185.83885 * 10 7 6 12 12 C 1.53047 * 109.36743 * 176.80981 * 11 10 7 13 13 N 1.46948 * 109.36832 * 58.39947 * 12 11 10 14 14 C 1.46894 * 111.00636 * 176.81252 * 13 12 11 15 15 C 1.52999 * 109.47307 * 199.00783 * 14 13 12 16 16 H 1.08996 * 109.46943 * 305.79114 * 15 14 13 17 17 C 1.47199 * 109.47163 * 65.79384 * 15 14 13 18 18 N 9.64800 * 160.25257 * 80.13252 * 3 1 2 19 19 C 1.53006 * 109.46926 * 185.79208 * 15 14 13 20 20 C 1.50705 * 109.46966 * 175.00008 * 19 15 14 21 21 H 1.08000 * 119.99643 * 0.02562 * 20 19 15 22 22 C 1.37877 * 119.99773 * 180.02562 * 20 19 15 23 23 N 1.31511 * 120.00042 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99631 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47252 * 89.99808 * 24 22 20 26 26 H 1.48505 * 109.46802 * 209.99824 * 24 22 20 27 27 H 1.48499 * 109.47388 * 329.99503 * 24 22 20 28 28 C 1.46955 * 110.87836 * 300.68431 * 13 12 11 29 29 C 1.46948 * 111.00636 * 62.03689 * 10 7 6 30 30 N 1.31130 * 106.89331 * 0.02562 * 6 5 4 31 31 H 1.08997 * 109.47517 * 300.00426 * 1 2 3 32 32 H 1.09003 * 109.47581 * 60.00316 * 1 2 3 33 33 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47139 * 240.00452 * 2 1 3 35 35 H 1.08999 * 109.47173 * 119.99401 * 2 1 3 36 36 H 1.08995 * 109.47448 * 180.02562 * 9 7 6 37 37 H 1.09004 * 109.46978 * 300.00524 * 9 7 6 38 38 H 1.09002 * 109.47123 * 59.99867 * 9 7 6 39 39 H 1.09002 * 109.48586 * 296.77753 * 11 10 7 40 40 H 1.09003 * 109.49231 * 56.83896 * 11 10 7 41 41 H 1.09001 * 109.48882 * 298.42555 * 12 11 10 42 42 H 1.09006 * 109.50607 * 178.38141 * 12 11 10 43 43 H 1.09005 * 109.46902 * 319.00321 * 14 13 12 44 44 H 1.09002 * 109.47425 * 79.00484 * 14 13 12 45 45 H 1.08998 * 109.47320 * 295.00028 * 19 15 14 46 46 H 1.08997 * 109.46850 * 55.00233 * 19 15 14 47 47 H 0.97003 * 119.99614 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.48586 * 299.34744 * 28 13 12 49 49 H 1.09003 * 109.49231 * 179.28601 * 28 13 12 50 50 H 1.09007 * 109.48646 * 303.15572 * 29 10 7 51 51 H 1.09001 * 109.49004 * 63.19754 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2881 2.1461 1.0474 5 8 2.6773 3.2451 0.7123 6 6 2.7081 3.3275 -0.6213 7 6 3.1311 4.5219 -1.4371 8 1 3.3598 4.2044 -2.4544 9 6 1.9962 5.5476 -1.4661 10 7 4.3247 5.1292 -0.8336 11 6 4.6856 6.3769 -1.5210 12 6 5.8824 7.0178 -0.8145 13 7 7.0099 6.0753 -0.8138 14 6 8.2035 6.6825 -0.2103 15 6 9.4460 5.8984 -0.6372 16 1 9.3114 4.8443 -0.3947 17 6 9.6452 6.0466 -2.0881 18 7 9.7944 6.1663 -3.2116 19 6 10.6703 6.4399 0.1037 20 6 11.8714 5.5901 -0.2227 21 1 11.7715 4.7484 -0.8919 22 6 13.0976 5.8874 0.3331 23 7 13.2193 6.9127 1.1476 24 14 14.5865 4.8345 -0.0719 25 1 15.2728 5.3866 -1.2675 26 1 15.5225 4.8363 1.0810 27 1 14.1480 3.4435 -0.3512 28 6 6.6490 4.8275 -0.1265 29 6 5.4522 4.1867 -0.8330 30 7 2.2989 2.1708 -1.0841 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 2.3019 6.4112 -2.0565 37 1 1.1105 5.0968 -1.9139 38 1 1.7673 5.8650 -0.4487 39 1 4.9483 6.1589 -2.5561 40 1 3.8390 7.0632 -1.4972 41 1 5.6109 7.2607 0.2129 42 1 6.1701 7.9286 -1.3396 43 1 8.2937 7.7162 -0.5445 44 1 8.1139 6.6583 0.8757 45 1 10.8574 7.4679 -0.2066 46 1 10.4866 6.4122 1.1777 47 1 14.0819 7.1216 1.5389 48 1 6.3863 5.0455 0.9087 49 1 7.4956 4.1412 -0.1503 50 1 5.1645 3.2760 -0.3075 51 1 5.7234 3.9435 -1.8603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069897583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:05 Heat of formation + Delta-G solvation = 97.168262 kcal Electronic energy + Delta-G solvation = -30509.616551 eV Core-core repulsion = 26447.276054 eV Total energy + Delta-G solvation = -4062.340497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.83827 -39.81514 -37.41518 -36.62188 -35.67624 -34.06240 -33.50885 -32.38071 -31.44436 -31.38972 -30.24267 -27.51679 -25.91670 -25.41851 -24.68630 -23.48112 -23.03130 -22.39845 -21.65939 -20.77309 -19.86298 -18.40481 -17.63881 -16.85664 -16.62144 -16.29850 -16.21787 -15.25178 -15.08402 -14.96933 -14.78550 -14.60519 -14.55376 -14.32622 -14.00480 -13.42710 -13.16204 -12.94516 -12.86540 -12.84690 -12.75900 -12.36177 -12.22226 -12.17448 -11.97837 -11.88749 -11.72269 -11.63710 -11.48774 -11.39175 -11.27647 -11.20055 -11.08117 -11.03236 -10.98393 -10.65967 -10.50893 -10.19701 -10.11068 -9.53650 -9.23283 -8.82016 -8.46070 -8.24281 -6.09997 -4.12990 0.87478 1.91579 2.51131 3.01352 3.29629 3.36205 3.39412 3.51224 3.69932 3.80624 3.81850 3.92105 4.34911 4.40981 4.47726 4.60994 4.70442 4.74187 4.77127 4.85094 4.93845 4.96430 5.09889 5.16219 5.17251 5.22001 5.28192 5.29933 5.33329 5.38663 5.43793 5.49332 5.54228 5.61980 5.64714 5.66189 5.70928 5.73000 5.80595 5.86649 5.95225 6.03502 6.32991 6.46401 6.53101 6.59666 7.11260 7.12077 7.42320 7.52420 7.85260 7.93048 8.22909 8.58447 8.91680 9.52468 11.00832 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.002124 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.041501 B =13178.650087 C =14229.575835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.168 3.832 4 N -0.386 5.386 5 O 0.097 5.903 6 C 0.196 3.804 7 C 0.174 3.826 8 H 0.090 0.910 9 C -0.150 4.150 10 N -0.533 5.533 11 C 0.057 3.943 12 C 0.058 3.942 13 N -0.544 5.544 14 C 0.064 3.936 15 C 0.013 3.987 16 H 0.099 0.901 17 C 0.257 3.743 18 N -0.483 5.483 19 C 0.031 3.969 20 C -0.525 4.525 21 H 0.056 0.944 22 C 0.062 3.938 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.057 3.943 29 C 0.057 3.943 30 N -0.482 5.482 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.026 0.974 46 H 0.037 0.963 47 H 0.262 0.738 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.069 0.931 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.815 -6.078 -1.004 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.105 4.105 4 N -0.092 5.092 5 O 0.037 5.963 6 C -0.025 4.025 7 C 0.064 3.936 8 H 0.107 0.893 9 C -0.208 4.208 10 N -0.259 5.259 11 C -0.070 4.070 12 C -0.070 4.070 13 N -0.269 5.269 14 C -0.065 4.065 15 C -0.009 4.009 16 H 0.116 0.884 17 C -0.060 4.060 18 N -0.160 5.160 19 C -0.007 4.007 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.071 4.071 29 C -0.071 4.071 30 N -0.217 5.217 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.106 0.894 50 H 0.087 0.913 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -27.673 -6.409 -2.070 28.481 hybrid contribution 1.040 -0.550 0.249 1.203 sum -26.632 -6.959 -1.821 27.587 Atomic orbital electron populations 1.21732 0.93313 1.02827 1.02612 1.19932 0.96775 0.85687 1.04761 1.25871 1.00669 1.00513 0.83485 1.74672 1.17412 0.93088 1.23996 1.85366 1.59849 1.26603 1.24444 1.28549 0.95608 0.95992 0.82334 1.20066 0.92750 0.87396 0.93414 0.89269 1.21990 0.96361 0.98237 1.04194 1.62201 1.03699 1.05806 1.54234 1.22300 0.97873 0.90415 0.96458 1.22137 0.89745 0.95227 0.99884 1.62178 1.04608 1.05074 1.55021 1.22223 0.87964 0.98501 0.97802 1.19215 0.96920 1.01933 0.82861 0.88367 1.29033 0.90408 0.91898 0.94626 1.81135 1.11440 1.10090 1.13309 1.19177 0.89087 0.97023 0.95456 1.21133 0.93415 1.13570 1.28240 0.92542 1.24952 0.98942 0.95207 0.94892 1.69936 1.24820 1.27406 1.30823 0.86598 0.82672 0.80888 0.77952 1.20650 1.21107 1.19772 1.22177 0.96594 0.92390 0.95974 1.22217 0.90036 0.94383 1.00457 1.71877 1.18494 1.01692 1.29612 0.92334 0.92044 0.91013 0.88599 0.89021 0.89938 0.91230 0.90587 0.93261 0.89357 0.93549 0.89913 0.90261 0.92368 0.95586 0.94441 0.92808 0.93352 0.89392 0.91254 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.03 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.17 1.80 7.47 -156.38 -1.17 0.63 16 4 N -0.39 -4.69 12.16 30.90 0.38 -4.31 16 5 O 0.10 1.14 11.30 18.08 0.20 1.34 16 6 C 0.20 2.02 5.87 -13.05 -0.08 1.95 16 7 C 0.17 1.42 2.62 -68.87 -0.18 1.24 16 8 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 9 C -0.15 -0.88 8.75 37.16 0.33 -0.55 16 10 N -0.53 -4.90 4.57 -227.89 -1.04 -5.94 16 11 C 0.06 0.48 5.18 -3.77 -0.02 0.46 16 12 C 0.06 0.59 5.57 -3.77 -0.02 0.57 16 13 N -0.54 -6.82 4.36 -234.48 -1.02 -7.84 16 14 C 0.06 0.90 4.35 -3.83 -0.02 0.88 16 15 C 0.01 0.23 2.27 -93.40 -0.21 0.02 16 16 H 0.10 1.69 6.68 -51.93 -0.35 1.34 16 17 C 0.26 5.28 13.70 -20.64 -0.28 5.00 16 18 N -0.48 -10.80 18.56 42.30 0.79 -10.01 16 19 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 20 C -0.53 -13.89 8.60 -34.44 -0.30 -14.19 16 21 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 24 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.06 0.66 5.43 -3.77 -0.02 0.64 16 29 C 0.06 0.61 5.41 -3.77 -0.02 0.59 16 30 N -0.48 -5.40 11.55 -9.87 -0.11 -5.51 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.37 6.26 -51.93 -0.33 0.04 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.55 6.03 -51.93 -0.31 0.24 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.80 8.00 -51.93 -0.42 0.39 16 43 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 44 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.09 1.07 6.67 -51.93 -0.35 0.72 16 50 H 0.07 0.77 7.04 -51.92 -0.37 0.40 16 51 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 414.63 15.07 6.25 6.25 Total: -1.00 -31.75 414.63 -9.26 -41.01 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -8.39 Total: -5.13 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.02 Total: -1.49 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.28 Total: -58.25 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.75 -9.26 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069897583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.179 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds