Wall clock time and date at job start Tue Mar 31 2020 05:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47314 * 2 1 4 4 N 1.29956 * 126.28696 * 269.97808 * 3 2 1 5 5 O 1.21296 * 110.25079 * 179.71994 * 4 3 2 6 6 C 1.33650 * 109.81052 * 0.47326 * 5 4 3 7 7 C 1.50702 * 126.54926 * 179.79706 * 6 5 4 8 8 H 1.09004 * 109.46925 * 194.68770 * 7 6 5 9 9 C 1.53002 * 109.46930 * 74.68755 * 7 6 5 10 10 N 1.46900 * 109.47069 * 314.68837 * 7 6 5 11 11 C 1.46960 * 110.99680 * 179.97438 * 10 7 6 12 12 C 1.53048 * 109.36369 * 183.18731 * 11 10 7 13 13 N 1.46958 * 109.36467 * 301.59907 * 12 11 10 14 14 C 1.46900 * 111.00070 * 183.18566 * 13 12 11 15 15 C 1.53002 * 109.46891 * 75.76134 * 14 13 12 16 16 H 1.09000 * 109.46909 * 304.79956 * 15 14 13 17 17 C 1.47199 * 109.47346 * 64.79726 * 15 14 13 18 18 N 9.52894 * 158.21219 * 284.50716 * 3 1 2 19 19 C 1.53002 * 109.47279 * 184.79883 * 15 14 13 20 20 C 1.50696 * 109.47325 * 174.99438 * 19 15 14 21 21 H 1.08006 * 120.00079 * 0.02562 * 20 19 15 22 22 C 1.37875 * 120.00045 * 179.97438 * 20 19 15 23 23 N 1.31513 * 120.00023 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47082 * 90.00217 * 24 22 20 26 26 H 1.48498 * 109.47076 * 210.00257 * 24 22 20 27 27 H 1.48501 * 109.47063 * 330.00124 * 24 22 20 28 28 C 1.46960 * 110.88094 * 59.32108 * 13 12 11 29 29 C 1.46958 * 111.00070 * 303.79817 * 10 7 6 30 30 N 1.31126 * 106.89410 * 359.53675 * 6 5 4 31 31 H 1.09004 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46764 * 299.99668 * 1 2 3 33 33 H 1.08998 * 109.47377 * 59.99948 * 1 2 3 34 34 H 1.09006 * 109.47085 * 240.00022 * 2 1 3 35 35 H 1.08998 * 109.47377 * 120.00051 * 2 1 3 36 36 H 1.09001 * 109.46809 * 60.00112 * 9 7 6 37 37 H 1.09002 * 109.46674 * 179.97438 * 9 7 6 38 38 H 1.09004 * 109.47328 * 299.99768 * 9 7 6 39 39 H 1.09003 * 109.48755 * 63.22211 * 11 10 7 40 40 H 1.09002 * 109.49067 * 303.15726 * 11 10 7 41 41 H 1.08999 * 109.48911 * 181.63537 * 12 11 10 42 42 H 1.09000 * 109.48696 * 61.56445 * 12 11 10 43 43 H 1.08995 * 109.47396 * 315.76046 * 14 13 12 44 44 H 1.08997 * 109.47439 * 195.75480 * 14 13 12 45 45 H 1.08997 * 109.46911 * 294.99747 * 19 15 14 46 46 H 1.09000 * 109.46646 * 54.99613 * 19 15 14 47 47 H 0.97006 * 120.00260 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.48755 * 60.64470 * 28 13 12 49 49 H 1.09002 * 109.49103 * 180.71512 * 28 13 12 50 50 H 1.09007 * 109.48692 * 296.78195 * 29 10 7 51 51 H 1.09000 * 109.48583 * 56.84310 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1458 -1.0475 5 8 2.6724 3.2467 -0.7125 6 6 2.7071 3.3278 0.6211 7 6 3.1297 4.5224 1.4369 8 1 3.3029 4.2151 2.4683 9 6 2.0266 5.5820 1.3988 10 7 4.3672 5.0836 0.8787 11 6 4.8099 6.2533 1.6503 12 6 6.0537 6.8546 0.9916 13 7 7.1122 5.8370 0.9293 14 6 8.3497 6.3982 0.3710 15 6 9.0387 7.2645 1.4273 16 1 8.3429 8.0237 1.7846 17 6 9.4635 6.4188 2.5547 18 7 9.7919 5.7643 3.4241 19 6 10.2626 7.9444 0.8101 20 6 10.8697 8.8918 1.8125 21 1 10.4272 8.9981 2.7919 22 6 11.9908 9.6221 1.4795 23 7 12.5300 9.4922 0.2871 24 14 12.7439 10.7960 2.7223 25 1 13.7584 10.0752 3.5324 26 1 13.3920 11.9247 2.0074 27 1 11.6797 11.3213 3.6150 28 6 6.6695 4.6672 0.1576 29 6 5.4255 4.0658 0.8158 30 7 2.2977 2.1713 1.0840 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.1084 5.1656 1.8130 37 1 2.3321 6.4458 1.9892 38 1 1.8534 5.8893 0.3674 39 1 5.0496 5.9476 2.6687 40 1 4.0138 6.9976 1.6714 41 1 6.4009 7.7049 1.5785 42 1 5.8071 7.1850 -0.0174 43 1 8.1114 7.0082 -0.5002 44 1 9.0155 5.5873 0.0757 45 1 10.9973 7.1882 0.5335 46 1 9.9606 8.4995 -0.0779 47 1 13.3190 10.0058 0.0529 48 1 6.4298 4.9729 -0.8608 49 1 7.4655 3.9229 0.1366 50 1 5.6722 3.7349 1.8247 51 1 5.0780 3.2157 0.2287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069897585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:08 Heat of formation + Delta-G solvation = 96.845611 kcal Electronic energy + Delta-G solvation = -30442.308589 eV Core-core repulsion = 26379.954101 eV Total energy + Delta-G solvation = -4062.354488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.88240 -39.80597 -37.41671 -36.65815 -35.70920 -34.08186 -33.53528 -32.41645 -31.60038 -31.10976 -30.39988 -27.51943 -25.72240 -25.45499 -24.91245 -23.46781 -22.94592 -22.46958 -21.67055 -20.78706 -19.87339 -18.45718 -17.65931 -16.85994 -16.65535 -16.27999 -16.19398 -15.22041 -15.09218 -15.00473 -14.77036 -14.66127 -14.53586 -14.33141 -14.00105 -13.45775 -13.22548 -13.02487 -12.88150 -12.79745 -12.60273 -12.47404 -12.22225 -12.19462 -11.96056 -11.90528 -11.74613 -11.65446 -11.53610 -11.38902 -11.30161 -11.20673 -11.12743 -11.03800 -10.95037 -10.66247 -10.51216 -10.19123 -10.15382 -9.54069 -9.23722 -8.81705 -8.46286 -8.24408 -6.10128 -4.13274 0.83398 1.88022 2.47305 3.00954 3.29392 3.36112 3.38963 3.48233 3.71726 3.77498 3.82626 3.92256 4.33888 4.40743 4.49023 4.60298 4.67789 4.72514 4.75366 4.85489 4.92154 4.96737 5.09263 5.17075 5.19373 5.20888 5.28073 5.30246 5.30881 5.38063 5.41314 5.46411 5.55706 5.62412 5.63365 5.65272 5.69583 5.71444 5.81400 5.86561 5.95100 6.03285 6.33136 6.45912 6.53140 6.59169 7.10231 7.12772 7.42144 7.52419 7.84989 7.89003 8.22650 8.59068 8.91467 9.52254 11.00681 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.001870 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.485220 B =14967.553740 C =15166.609383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.168 3.832 4 N -0.386 5.386 5 O 0.095 5.905 6 C 0.196 3.804 7 C 0.174 3.826 8 H 0.090 0.910 9 C -0.148 4.148 10 N -0.532 5.532 11 C 0.057 3.943 12 C 0.054 3.946 13 N -0.544 5.544 14 C 0.063 3.937 15 C 0.013 3.987 16 H 0.099 0.901 17 C 0.257 3.743 18 N -0.482 5.482 19 C 0.031 3.969 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.061 3.939 29 C 0.057 3.943 30 N -0.482 5.482 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.038 0.962 47 H 0.262 0.738 48 H 0.046 0.954 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.738 -12.575 -2.658 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.105 4.105 4 N -0.092 5.092 5 O 0.036 5.964 6 C -0.025 4.025 7 C 0.064 3.936 8 H 0.107 0.893 9 C -0.206 4.206 10 N -0.259 5.259 11 C -0.071 4.071 12 C -0.074 4.074 13 N -0.269 5.269 14 C -0.065 4.065 15 C -0.009 4.009 16 H 0.117 0.883 17 C -0.059 4.059 18 N -0.159 5.159 19 C -0.008 4.008 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.067 4.067 29 C -0.071 4.071 30 N -0.216 5.216 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.067 0.933 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.308 -14.108 -1.977 29.042 hybrid contribution 0.556 0.989 0.323 1.179 sum -24.753 -13.119 -1.654 28.063 Atomic orbital electron populations 1.21733 0.93269 1.02848 1.02646 1.19932 0.96814 0.85667 1.04734 1.25882 1.00613 1.00536 0.83488 1.74672 1.17573 0.92971 1.23994 1.85363 1.60113 1.26468 1.24478 1.28556 0.95556 0.96031 0.82325 1.20117 0.92347 0.87394 0.93791 0.89276 1.21961 0.96477 0.97863 1.04339 1.62264 1.02831 1.08107 1.52667 1.22306 0.97299 0.91837 0.95617 1.22228 0.90001 0.94629 1.00519 1.62182 1.04343 1.07452 1.52897 1.22227 0.90037 0.98468 0.95794 1.19210 1.00239 0.93246 0.88177 0.88289 1.28908 0.91166 0.92291 0.93584 1.81013 1.11237 1.11814 1.11872 1.19175 0.89786 0.95324 0.96488 1.21132 1.11965 1.23605 0.99679 0.92516 1.24950 0.96756 0.96991 0.95264 1.69937 1.21954 1.41520 1.19575 0.86599 0.79552 0.80592 0.81362 1.20674 1.21118 1.19752 1.22082 0.95656 0.93452 0.95507 1.22197 0.90975 0.93422 1.00462 1.71887 1.18404 1.01739 1.29595 0.90996 0.92012 0.92321 0.89046 0.88604 0.91317 0.89916 0.90555 0.93218 0.89284 0.89172 0.93332 0.92330 0.90379 0.95636 0.94428 0.92809 0.93542 0.90147 0.93255 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.48 16 2 C -0.03 -0.23 6.56 -27.89 -0.18 -0.41 16 3 C 0.17 1.76 7.47 -156.37 -1.17 0.59 16 4 N -0.39 -4.56 12.16 30.90 0.38 -4.19 16 5 O 0.10 1.09 11.14 18.08 0.20 1.29 16 6 C 0.20 2.00 5.64 -13.06 -0.07 1.92 16 7 C 0.17 1.42 2.62 -68.86 -0.18 1.24 16 8 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 9 C -0.15 -0.89 8.95 37.16 0.33 -0.56 16 10 N -0.53 -4.91 4.57 -227.87 -1.04 -5.95 16 11 C 0.06 0.50 5.32 -3.77 -0.02 0.48 16 12 C 0.05 0.57 5.43 -3.77 -0.02 0.55 16 13 N -0.54 -6.85 4.34 -234.47 -1.02 -7.87 16 14 C 0.06 0.90 4.36 -3.82 -0.02 0.88 16 15 C 0.01 0.24 2.27 -93.41 -0.21 0.03 16 16 H 0.10 1.63 6.74 -51.93 -0.35 1.28 16 17 C 0.26 5.26 13.67 -20.74 -0.28 4.98 16 18 N -0.48 -10.80 18.54 42.18 0.78 -10.02 16 19 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 20 C -0.53 -13.77 8.60 -34.44 -0.30 -14.07 16 21 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 24 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.06 0.69 5.56 -3.77 -0.02 0.67 16 29 C 0.06 0.61 5.34 -3.77 -0.02 0.58 16 30 N -0.48 -5.31 11.55 -9.86 -0.11 -5.43 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.39 6.34 -51.93 -0.33 0.06 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.59 6.14 -51.93 -0.32 0.27 16 41 H 0.09 0.95 6.72 -51.93 -0.35 0.61 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.77 8.00 -51.93 -0.42 0.36 16 44 H 0.08 1.13 7.84 -51.93 -0.41 0.72 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 50 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 51 H 0.07 0.73 6.73 -51.93 -0.35 0.38 16 LS Contribution 414.40 15.07 6.24 6.24 Total: -1.00 -31.59 414.40 -9.25 -40.84 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -8.39 Total: -5.09 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.02 Total: -1.41 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.28 Total: -57.97 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.29 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.59 -9.25 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069897585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.686 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds