Wall clock time and date at job start Tue Mar 31 2020 05:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47314 * 2 1 4 4 N 1.29956 * 126.28696 * 269.97808 * 3 2 1 5 5 O 1.21296 * 110.25079 * 179.71994 * 4 3 2 6 6 C 1.33650 * 109.81052 * 0.47326 * 5 4 3 7 7 C 1.50702 * 126.54926 * 179.79706 * 6 5 4 8 8 H 1.09004 * 109.46925 * 194.68770 * 7 6 5 9 9 C 1.53002 * 109.46930 * 74.68755 * 7 6 5 10 10 N 1.46900 * 109.47069 * 314.68837 * 7 6 5 11 11 C 1.46960 * 110.99680 * 179.97438 * 10 7 6 12 12 C 1.53048 * 109.36369 * 183.18731 * 11 10 7 13 13 N 1.46958 * 109.36467 * 301.59907 * 12 11 10 14 14 C 1.46900 * 111.00070 * 183.18566 * 13 12 11 15 15 C 1.53002 * 109.46891 * 75.76134 * 14 13 12 16 16 H 1.09000 * 109.46909 * 304.79956 * 15 14 13 17 17 C 1.47199 * 109.47346 * 64.79726 * 15 14 13 18 18 N 9.52894 * 158.21219 * 284.50716 * 3 1 2 19 19 C 1.53002 * 109.47279 * 184.79883 * 15 14 13 20 20 C 1.50696 * 109.47325 * 174.99438 * 19 15 14 21 21 H 1.08006 * 120.00079 * 0.02562 * 20 19 15 22 22 C 1.37875 * 120.00045 * 179.97438 * 20 19 15 23 23 N 1.31513 * 120.00023 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47082 * 90.00217 * 24 22 20 26 26 H 1.48498 * 109.47076 * 210.00257 * 24 22 20 27 27 H 1.48501 * 109.47063 * 330.00124 * 24 22 20 28 28 C 1.46960 * 110.88094 * 59.32108 * 13 12 11 29 29 C 1.46958 * 111.00070 * 303.79817 * 10 7 6 30 30 N 1.31126 * 106.89410 * 359.53675 * 6 5 4 31 31 H 1.09004 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46764 * 299.99668 * 1 2 3 33 33 H 1.08998 * 109.47377 * 59.99948 * 1 2 3 34 34 H 1.09006 * 109.47085 * 240.00022 * 2 1 3 35 35 H 1.08998 * 109.47377 * 120.00051 * 2 1 3 36 36 H 1.09001 * 109.46809 * 60.00112 * 9 7 6 37 37 H 1.09002 * 109.46674 * 179.97438 * 9 7 6 38 38 H 1.09004 * 109.47328 * 299.99768 * 9 7 6 39 39 H 1.09003 * 109.48755 * 63.22211 * 11 10 7 40 40 H 1.09002 * 109.49067 * 303.15726 * 11 10 7 41 41 H 1.08999 * 109.48911 * 181.63537 * 12 11 10 42 42 H 1.09000 * 109.48696 * 61.56445 * 12 11 10 43 43 H 1.08995 * 109.47396 * 315.76046 * 14 13 12 44 44 H 1.08997 * 109.47439 * 195.75480 * 14 13 12 45 45 H 1.08997 * 109.46911 * 294.99747 * 19 15 14 46 46 H 1.09000 * 109.46646 * 54.99613 * 19 15 14 47 47 H 0.97006 * 120.00260 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.48755 * 60.64470 * 28 13 12 49 49 H 1.09002 * 109.49103 * 180.71512 * 28 13 12 50 50 H 1.09007 * 109.48692 * 296.78195 * 29 10 7 51 51 H 1.09000 * 109.48583 * 56.84310 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1458 -1.0475 5 8 2.6724 3.2467 -0.7125 6 6 2.7071 3.3278 0.6211 7 6 3.1297 4.5224 1.4369 8 1 3.3029 4.2151 2.4683 9 6 2.0266 5.5820 1.3988 10 7 4.3672 5.0836 0.8787 11 6 4.8099 6.2533 1.6503 12 6 6.0537 6.8546 0.9916 13 7 7.1122 5.8370 0.9293 14 6 8.3497 6.3982 0.3710 15 6 9.0387 7.2645 1.4273 16 1 8.3429 8.0237 1.7846 17 6 9.4635 6.4188 2.5547 18 7 9.7919 5.7643 3.4241 19 6 10.2626 7.9444 0.8101 20 6 10.8697 8.8918 1.8125 21 1 10.4272 8.9981 2.7919 22 6 11.9908 9.6221 1.4795 23 7 12.5300 9.4922 0.2871 24 14 12.7439 10.7960 2.7223 25 1 13.7584 10.0752 3.5324 26 1 13.3920 11.9247 2.0074 27 1 11.6797 11.3213 3.6150 28 6 6.6695 4.6672 0.1576 29 6 5.4255 4.0658 0.8158 30 7 2.2977 2.1713 1.0840 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.1084 5.1656 1.8130 37 1 2.3321 6.4458 1.9892 38 1 1.8534 5.8893 0.3674 39 1 5.0496 5.9476 2.6687 40 1 4.0138 6.9976 1.6714 41 1 6.4009 7.7049 1.5785 42 1 5.8071 7.1850 -0.0174 43 1 8.1114 7.0082 -0.5002 44 1 9.0155 5.5873 0.0757 45 1 10.9973 7.1882 0.5335 46 1 9.9606 8.4995 -0.0779 47 1 13.3190 10.0058 0.0529 48 1 6.4298 4.9729 -0.8608 49 1 7.4655 3.9229 0.1366 50 1 5.6722 3.7349 1.8247 51 1 5.0780 3.2157 0.2287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069897585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:07 Heat of formation + Delta-G solvation = 75.321685 kcal Electronic energy + Delta-G solvation = -30443.241937 eV Core-core repulsion = 26379.954101 eV Total energy + Delta-G solvation = -4063.287836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -46.68439 -40.65806 -38.61143 -37.42636 -36.97856 -35.52492 -34.70841 -33.67464 -32.53353 -32.11035 -31.20022 -28.89361 -26.89416 -26.09403 -25.85055 -24.28993 -24.11456 -23.44540 -23.22520 -21.52184 -20.69362 -19.27259 -18.53874 -18.44172 -18.14937 -17.35469 -16.97174 -16.57661 -16.00260 -15.87928 -15.76440 -15.67415 -15.46166 -15.16024 -15.01700 -14.56047 -14.28991 -14.14966 -14.02630 -13.75502 -13.64590 -13.57328 -13.49547 -13.13470 -13.00497 -12.88190 -12.72031 -12.59512 -12.54044 -12.51656 -12.39857 -12.35079 -12.29745 -12.19648 -12.10512 -11.99119 -11.79190 -11.60246 -11.31010 -11.06123 -10.97016 -10.53360 -9.57805 -9.21391 -8.17136 -6.25055 0.04520 1.10584 1.41566 1.44122 1.52853 1.73185 2.09705 2.17219 2.29468 2.43243 2.79196 2.90734 3.05620 3.18591 3.38738 3.68140 3.80307 3.89872 4.02445 4.09995 4.17469 4.18779 4.20698 4.30125 4.34014 4.40973 4.41925 4.52096 4.58313 4.69860 4.71879 4.75743 4.77869 4.81349 4.83396 4.89133 4.91233 4.93441 4.99808 5.00874 5.09076 5.15187 5.21107 5.26638 5.50028 5.64580 5.73994 5.81701 5.82628 6.07967 6.19793 6.24612 6.86280 6.97054 7.09784 7.43461 8.93602 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.001870 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.485220 B =14967.553740 C =15166.609383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C 0.166 3.834 4 N -0.408 5.408 5 O 0.081 5.919 6 C 0.201 3.799 7 C 0.175 3.825 8 H 0.093 0.907 9 C -0.143 4.143 10 N -0.532 5.532 11 C 0.061 3.939 12 C 0.051 3.949 13 N -0.555 5.555 14 C 0.074 3.926 15 C 0.026 3.974 16 H 0.119 0.881 17 C 0.268 3.732 18 N -0.518 5.518 19 C 0.037 3.963 20 C -0.536 4.536 21 H 0.055 0.945 22 C 0.011 3.989 23 N -0.923 5.923 24 Si 0.947 3.053 25 H -0.286 1.286 26 H -0.279 1.279 27 H -0.263 1.263 28 C 0.065 3.935 29 C 0.066 3.934 30 N -0.500 5.500 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.072 0.928 45 H -0.001 1.001 46 H 0.036 0.964 47 H 0.263 0.737 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.038 0.962 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.533 -12.114 -2.138 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.107 4.107 4 N -0.118 5.118 5 O 0.025 5.975 6 C -0.020 4.020 7 C 0.065 3.935 8 H 0.111 0.889 9 C -0.201 4.201 10 N -0.259 5.259 11 C -0.066 4.066 12 C -0.077 4.077 13 N -0.280 5.280 14 C -0.055 4.055 15 C 0.004 3.996 16 H 0.137 0.863 17 C -0.048 4.048 18 N -0.196 5.196 19 C -0.002 4.002 20 C -0.574 4.574 21 H 0.073 0.927 22 C -0.188 4.188 23 N -0.563 5.563 24 Si 0.773 3.227 25 H -0.212 1.212 26 H -0.205 1.205 27 H -0.187 1.187 28 C -0.063 4.063 29 C -0.062 4.062 30 N -0.234 5.234 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.056 0.944 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.120 -13.627 -1.448 30.386 hybrid contribution 1.097 0.807 0.168 1.372 sum -26.023 -12.821 -1.280 29.038 Atomic orbital electron populations 1.21702 0.92209 1.04104 1.01876 1.20154 0.97637 0.83921 1.05688 1.26519 0.99558 1.01576 0.83033 1.74661 1.18927 0.93389 1.24798 1.85328 1.60580 1.26574 1.25025 1.28980 0.94611 0.96344 0.82073 1.20293 0.92476 0.87424 0.93326 0.88925 1.21968 0.95857 0.97656 1.04602 1.62270 1.02682 1.07887 1.53061 1.22341 0.97434 0.92080 0.94776 1.22337 0.89998 0.94246 1.01119 1.62113 1.04449 1.08306 1.53105 1.22021 0.90660 0.97978 0.94823 1.19156 0.98759 0.93730 0.87983 0.86291 1.29409 0.90276 0.91720 0.93391 1.81013 1.12170 1.13191 1.13197 1.18998 0.90945 0.94254 0.95969 1.21551 1.11961 1.23762 1.00174 0.92687 1.25703 0.97523 0.98725 0.96828 1.70033 1.22529 1.42651 1.21120 0.85717 0.78774 0.78841 0.79381 1.21229 1.20483 1.18671 1.22044 0.95825 0.92887 0.95576 1.22038 0.91110 0.93588 0.99499 1.71909 1.19281 1.02231 1.30027 0.88729 0.92667 0.93130 0.88092 0.87598 0.90696 0.88081 0.90825 0.93888 0.86501 0.88967 0.92737 0.90813 0.90979 0.98283 0.94565 0.92801 0.93207 0.90664 0.94412 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 71.98 0.71 -0.73 16 2 C -0.04 -0.46 6.56 29.85 0.20 -0.26 16 3 C 0.17 3.40 7.47 138.46 1.03 4.44 16 4 N -0.41 -9.59 12.16 -60.30 -0.73 -10.32 16 5 O 0.08 1.83 11.14 74.77 0.83 2.67 16 6 C 0.20 3.94 5.64 88.38 0.50 4.44 16 7 C 0.18 2.59 2.62 44.17 0.12 2.70 16 8 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 9 C -0.14 -1.38 8.95 71.98 0.64 -0.74 16 10 N -0.53 -8.92 4.57 -874.84 -4.00 -12.92 16 11 C 0.06 0.91 5.32 86.31 0.46 1.37 16 12 C 0.05 0.95 5.43 86.31 0.47 1.42 16 13 N -0.55 -13.17 4.34 -895.72 -3.88 -17.06 16 14 C 0.07 2.01 4.36 86.30 0.38 2.39 16 15 C 0.03 0.88 2.27 -12.60 -0.03 0.85 16 16 H 0.12 3.68 6.74 -2.39 -0.02 3.66 16 17 C 0.27 10.82 13.67 89.43 1.22 12.04 16 18 N -0.52 -23.09 18.54 20.01 0.37 -22.72 16 19 C 0.04 1.67 4.42 29.85 0.13 1.81 16 20 C -0.54 -27.89 8.60 25.60 0.22 -27.67 16 21 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 22 C 0.01 0.60 5.46 84.65 0.46 1.06 16 23 N -0.92 -52.56 13.29 21.45 0.28 -52.27 16 24 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 27 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 28 C 0.06 1.41 5.56 86.31 0.48 1.89 16 29 C 0.07 1.34 5.34 86.31 0.46 1.80 16 30 N -0.50 -10.73 11.55 -303.17 -3.50 -14.23 16 31 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 0.61 6.34 -2.39 -0.02 0.60 16 38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.12 1.13 6.14 -2.39 -0.01 1.12 16 41 H 0.09 1.70 6.72 -2.39 -0.02 1.69 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 44 H 0.07 2.05 7.84 -2.39 -0.02 2.03 16 45 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 48 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 49 H 0.07 1.69 8.00 -2.39 -0.02 1.67 16 50 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.06 1.32 6.73 -2.39 -0.02 1.30 16 Total: -1.00 -67.65 414.40 -0.23 -67.87 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.92 Total: 7.20 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 7.45 Total: 6.81 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -11.46 Total: -129.53 kcal Atomic # 8 Polarization: 1.83 SS G_CDS: 0.83 Total: 2.67 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.65 -0.23 -67.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069897585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.195 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds