Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36875 * 120.00464 * 2 1 4 4 H 1.08000 * 119.99966 * 161.99576 * 3 2 1 5 5 C 1.39044 * 119.99609 * 341.99749 * 3 2 1 6 6 N 1.31364 * 120.00629 * 343.00402 * 5 3 2 7 7 Si 1.86803 * 119.99753 * 163.00432 * 5 3 2 8 8 H 1.48503 * 109.47424 * 90.00066 * 7 5 3 9 9 H 1.48502 * 109.47203 * 210.00205 * 7 5 3 10 10 H 1.48504 * 109.47032 * 329.99700 * 7 5 3 11 11 C 1.34776 * 119.99776 * 180.02562 * 2 1 3 12 12 O 1.21591 * 120.00070 * 184.42368 * 11 2 1 13 13 C 1.47702 * 119.99818 * 4.41976 * 11 2 1 14 14 C 1.39674 * 120.13326 * 31.90581 * 13 11 2 15 15 C 1.37899 * 119.90419 * 180.02562 * 14 13 11 16 16 C 1.38432 * 120.17366 * 359.97438 * 15 14 13 17 17 I 2.09501 * 119.86742 * 180.28006 * 16 15 14 18 18 C 1.38638 * 120.26802 * 0.02562 * 16 15 14 19 19 F 1.35095 * 119.95458 * 180.02562 * 18 16 15 20 20 C 1.38150 * 120.09553 * 359.97438 * 18 16 15 21 21 H 1.08997 * 109.47638 * 209.93065 * 1 2 3 22 22 H 1.09004 * 109.47227 * 329.93519 * 1 2 3 23 23 H 1.09004 * 109.47463 * 89.92391 * 1 2 3 24 24 H 0.96997 * 120.00181 * 179.97438 * 6 5 3 25 25 H 1.08000 * 120.05408 * 0.04009 * 14 13 11 26 26 H 1.08004 * 119.91429 * 180.02562 * 15 14 13 27 27 H 1.08002 * 120.09015 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1898 1.2081 0.2891 5 6 1.5053 2.3600 -0.3722 6 7 0.3708 2.3064 -1.0323 7 14 2.2531 4.0146 0.0666 8 1 3.1554 4.4558 -1.0272 9 1 1.1704 5.0145 0.2489 10 1 3.0280 3.8889 1.3272 11 6 2.1388 -1.1672 -0.0005 12 8 3.3520 -1.1689 0.0807 13 6 1.4035 -2.4444 -0.0997 14 6 0.2103 -2.5122 -0.8226 15 6 -0.4726 -3.7069 -0.9116 16 6 0.0216 -4.8391 -0.2869 17 53 -1.0192 -6.6512 -0.4358 18 6 1.2052 -4.7799 0.4325 19 9 1.6820 -5.8888 1.0392 20 6 1.8984 -3.5888 0.5289 21 1 -0.3634 -0.8906 0.5127 22 1 -0.3634 0.8894 0.5149 23 1 -0.3634 0.0014 -1.0277 24 1 -0.0787 3.1259 -1.2916 25 1 -0.1769 -1.6304 -1.3113 26 1 -1.3951 -3.7596 -1.4709 27 1 2.8203 -3.5427 1.0897 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070039843.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -19.078024 kcal Electronic energy + Delta-G solvation = -16334.507421 eV Core-core repulsion = 13253.125440 eV Total energy + Delta-G solvation = -3081.381981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 348.972 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.89050 -39.65073 -37.63821 -34.97548 -32.55206 -31.73546 -30.44597 -28.23544 -26.48263 -24.96227 -22.77452 -22.30707 -19.80711 -17.49699 -17.04958 -16.21904 -15.68653 -15.66156 -15.46077 -14.61415 -14.22857 -14.10570 -13.67191 -12.95916 -12.74636 -12.49651 -12.09704 -11.89370 -11.47804 -11.17815 -11.03599 -10.83962 -10.56489 -10.47371 -10.22042 -9.95207 -9.20951 -8.89137 -8.70283 -8.47914 -7.96382 -6.60143 -4.03138 0.84234 1.02523 1.27236 3.01875 3.13972 3.19700 3.31151 3.90961 4.07548 4.19726 4.59614 4.84797 4.94684 5.18055 5.32799 5.40315 5.69937 5.93518 6.04356 6.18432 6.20274 6.51623 6.62703 6.82753 6.98677 7.33982 7.87109 8.24145 8.94495 9.15034 9.73703 10.43071 Molecular weight = 348.97amu Principal moments of inertia in cm(-1) A = 0.039828 B = 0.003203 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.849323 B = 8739.922779 C = 9341.935033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.421 5.421 3 C -0.304 4.304 4 H 0.107 0.893 5 C 0.032 3.968 6 N -0.866 5.866 7 Si 0.930 3.070 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.267 1.267 11 C 0.461 3.539 12 O -0.586 6.586 13 C -0.043 4.043 14 C -0.114 4.114 15 C -0.066 4.066 16 C -0.144 4.144 17 I -0.036 7.036 18 C 0.121 3.879 19 F -0.130 7.130 20 C -0.112 4.112 21 H 0.038 0.962 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.273 0.727 25 H 0.155 0.845 26 H 0.138 0.862 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -15.405 0.295 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.136 5.136 3 C -0.431 4.431 4 H 0.125 0.875 5 C -0.173 4.173 6 N -0.504 5.504 7 Si 0.756 3.244 8 H -0.200 1.200 9 H -0.206 1.206 10 H -0.191 1.191 11 C 0.251 3.749 12 O -0.472 6.472 13 C -0.048 4.048 14 C -0.135 4.135 15 C -0.086 4.086 16 C -0.286 4.286 17 I 0.113 6.887 18 C 0.099 3.901 19 F -0.108 7.108 20 C -0.134 4.134 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.173 0.827 26 H 0.156 0.844 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.784 -16.498 0.181 18.691 hybrid contribution 0.777 1.686 0.245 1.872 sum -8.007 -14.812 0.426 16.843 Atomic orbital electron populations 1.21962 0.80908 1.00192 1.01342 1.43577 1.05816 1.04849 1.59347 1.19808 0.97701 0.82771 1.42858 0.87497 1.25404 0.96390 1.00360 0.95129 1.69998 1.17237 1.29613 1.33532 0.85869 0.78683 0.80357 0.79541 1.20006 1.20552 1.19121 1.17709 0.87228 0.82824 0.87169 1.90635 1.13179 1.86432 1.56975 1.20346 0.93945 0.95128 0.95335 1.22070 0.94199 0.98576 0.98618 1.20877 0.99793 0.90533 0.97408 1.24372 0.98775 0.98015 1.07396 1.96726 1.72550 1.20968 1.98445 1.17206 0.93273 0.83484 0.96186 1.91527 1.87765 1.50539 1.81017 1.21192 1.00978 0.90001 1.01205 0.94371 0.90487 0.91891 0.91661 0.82726 0.84426 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.04 7.06 59.84 0.42 2.46 15 2 N -0.42 -10.25 3.02 -123.33 -0.37 -10.62 15 3 C -0.30 -8.02 9.36 -15.00 -0.14 -8.16 15 4 H 0.11 2.97 7.33 -52.49 -0.38 2.58 15 5 C 0.03 0.80 5.00 -17.45 -0.09 0.71 15 6 N -0.87 -21.24 10.68 55.50 0.59 -20.65 15 7 Si 0.93 19.42 29.59 -169.99 -5.03 14.39 15 8 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 9 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 10 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 11 C 0.46 11.05 7.36 -12.39 -0.09 10.96 15 12 O -0.59 -16.05 16.40 5.29 0.09 -15.97 15 13 C -0.04 -0.83 5.29 -104.97 -0.55 -1.38 15 14 C -0.11 -1.84 7.62 -39.17 -0.30 -2.14 15 15 C -0.07 -0.90 9.73 -39.63 -0.39 -1.29 15 16 C -0.14 -2.05 6.21 -39.36 -0.24 -2.30 15 17 I -0.04 -0.43 39.74 -73.02 -2.90 -3.33 15 18 C 0.12 1.90 7.25 -39.47 -0.29 1.61 15 19 F -0.13 -2.00 16.60 2.25 0.04 -1.96 15 20 C -0.11 -1.97 9.58 -39.09 -0.37 -2.34 15 21 H 0.04 0.67 5.89 -51.93 -0.31 0.36 15 22 H 0.08 1.68 6.75 -51.93 -0.35 1.33 15 23 H 0.06 1.28 6.34 -51.93 -0.33 0.95 15 24 H 0.27 6.31 8.31 -40.82 -0.34 5.97 15 25 H 0.16 2.47 4.99 -52.49 -0.26 2.20 15 26 H 0.14 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.15 2.60 7.95 -52.49 -0.42 2.18 15 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -27.90 267.42 -7.20 -35.11 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -1.61 Total: 0.85 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.04 Total: -1.85 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.22 Total: -31.27 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.09 Total: -15.97 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Atomic # 53 Polarization: -0.43 SS G_CDS: -2.90 Total: -3.33 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.90 -7.20 -35.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070039843.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.030 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds