Wall clock time and date at job start Tue Mar 31 2020 05:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37728 * 125.72284 * 2 1 4 4 C 1.46412 * 126.01217 * 359.97438 * 3 2 1 5 5 O 1.21769 * 119.99616 * 172.91321 * 4 3 2 6 6 N 1.34770 * 120.00130 * 353.18993 * 4 3 2 7 7 C 1.36834 * 120.00291 * 183.88337 * 6 4 3 8 8 H 1.08002 * 119.99574 * 0.02562 * 7 6 4 9 9 C 1.39019 * 120.00358 * 179.97438 * 7 6 4 10 10 N 1.31385 * 120.00167 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00094 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47150 * 89.99897 * 11 9 7 13 13 H 1.48496 * 109.47032 * 209.99961 * 11 9 7 14 14 H 1.48507 * 109.46793 * 330.00220 * 11 9 7 15 15 C 1.38207 * 107.97195 * 180.24743 * 3 2 1 16 16 C 1.39291 * 107.44939 * 359.63895 * 15 3 2 17 17 C 1.36478 * 125.72765 * 180.02562 * 2 1 3 18 18 C 1.47734 * 125.82442 * 359.97438 * 17 2 1 19 19 C 1.39644 * 120.15633 * 309.05682 * 18 17 2 20 20 C 1.37912 * 119.85948 * 180.02562 * 19 18 17 21 21 C 1.38413 * 120.17554 * 0.02562 * 20 19 18 22 22 C 1.38316 * 120.30789 * 359.97438 * 21 20 19 23 23 C 1.38076 * 120.13919 * 359.72157 * 22 21 20 24 24 Br 1.89104 * 120.08428 * 180.29734 * 23 22 21 25 25 H 1.08992 * 109.47127 * 82.51475 * 1 2 3 26 26 H 1.09003 * 109.46485 * 202.51332 * 1 2 3 27 27 H 1.08997 * 109.47617 * 322.51034 * 1 2 3 28 28 H 0.97001 * 120.00571 * 3.87830 * 6 4 3 29 29 H 0.97002 * 120.00192 * 179.97438 * 10 9 7 30 30 H 1.08000 * 126.27193 * 179.77613 * 15 3 2 31 31 H 1.07993 * 126.16211 * 180.09892 * 16 15 3 32 32 H 1.07996 * 120.06852 * 359.97438 * 19 18 17 33 33 H 1.07997 * 119.91461 * 179.97438 * 20 19 18 34 34 H 1.07990 * 119.84781 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.93013 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2692 1.1181 0.0000 4 6 1.8103 2.5085 -0.0005 5 8 2.6133 3.4146 0.1296 6 7 0.4987 2.7852 -0.1395 7 6 0.0783 4.0849 -0.2198 8 1 0.7978 4.8890 -0.1723 9 6 -1.2746 4.3703 -0.3637 10 7 -2.1498 3.3921 -0.4220 11 14 -1.8484 6.1446 -0.4741 12 1 -1.8611 6.5732 -1.8958 13 1 -3.2176 6.2580 0.0894 14 1 -0.9224 7.0131 0.2964 15 6 3.5855 0.6968 -0.0057 16 6 3.5782 -0.6961 -0.0008 17 6 2.2620 -1.1079 -0.0005 18 6 1.7945 -2.5094 -0.0006 19 6 0.8511 -2.9342 0.9373 20 6 0.4194 -4.2440 0.9320 21 6 0.9190 -5.1375 0.0004 22 6 1.8536 -4.7243 -0.9318 23 6 2.2902 -3.4144 -0.9421 24 35 3.5617 -2.8491 -2.2226 25 1 -0.3633 0.1339 -1.0188 26 1 -0.3632 -0.9494 0.3935 27 1 -0.3634 0.8154 0.6254 28 1 -0.1475 2.0630 -0.1826 29 1 -3.0939 3.5912 -0.5220 30 1 4.4594 1.3313 -0.0105 31 1 4.4467 -1.3379 -0.0018 32 1 0.4611 -2.2388 1.6657 33 1 -0.3098 -4.5737 1.6572 34 1 0.5775 -6.1620 0.0013 35 1 2.2390 -5.4265 -1.6562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071185165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:57 Heat of formation + Delta-G solvation = 47.654838 kcal Electronic energy + Delta-G solvation = -21663.858968 eV Core-core repulsion = 18288.142190 eV Total energy + Delta-G solvation = -3375.716778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98135 -39.07369 -37.66178 -34.32923 -32.89773 -32.35725 -31.92902 -31.09406 -29.44772 -27.87355 -26.29422 -25.18042 -23.08827 -22.53389 -20.98793 -19.79591 -19.08481 -17.83233 -17.24366 -16.50871 -15.68954 -15.54104 -14.83625 -14.75709 -14.20192 -14.02496 -13.81571 -13.55753 -13.37165 -13.16084 -13.04799 -12.48779 -12.18411 -11.97943 -11.76683 -11.54861 -11.44605 -11.26823 -11.16053 -10.89448 -10.43894 -10.29675 -10.11589 -9.67173 -9.25476 -8.87956 -8.68207 -8.27311 -8.14179 -7.41820 -6.60144 -3.94577 0.78584 0.99193 1.61032 2.14335 3.05907 3.09836 3.19166 3.21168 3.26152 3.55778 4.06823 4.31060 4.49225 4.60963 4.74175 4.90040 4.99246 5.07325 5.14616 5.21366 5.39095 5.45386 5.61010 5.69530 5.80135 5.89756 5.96944 6.09147 6.17040 6.20038 6.51236 6.64891 6.68416 7.25131 7.40662 7.46131 7.56563 7.94321 8.45246 9.01842 9.35260 9.88269 10.57965 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.017446 B = 0.003395 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.549882 B = 8245.172396 C = 9047.223460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.416 5.416 3 C 0.010 3.990 4 C 0.499 3.501 5 O -0.582 6.582 6 N -0.560 5.560 7 C -0.297 4.297 8 H 0.108 0.892 9 C 0.023 3.977 10 N -0.899 5.899 11 Si 0.935 3.065 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.267 1.267 15 C -0.144 4.144 16 C -0.158 4.158 17 C 0.021 3.979 18 C 0.024 3.976 19 C -0.112 4.112 20 C -0.102 4.102 21 C -0.120 4.120 22 C -0.090 4.090 23 C -0.078 4.078 24 Br -0.037 7.037 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.392 0.608 29 H 0.275 0.725 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.001 -20.413 -0.657 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.091 5.091 3 C -0.105 4.105 4 C 0.286 3.714 5 O -0.467 6.467 6 N -0.200 5.200 7 C -0.427 4.427 8 H 0.126 0.874 9 C -0.179 4.179 10 N -0.540 5.540 11 Si 0.761 3.239 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.169 4.169 16 C -0.183 4.183 17 C -0.092 4.092 18 C 0.021 3.979 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.139 4.139 22 C -0.110 4.110 23 C -0.159 4.159 24 Br 0.049 6.951 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.232 0.768 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.370 -19.517 -1.093 20.030 hybrid contribution -1.181 0.213 0.176 1.213 sum 3.189 -19.304 -0.917 19.587 Atomic orbital electron populations 1.22452 0.76992 1.04774 1.04831 1.44117 1.05948 1.05029 1.54019 1.21206 0.90751 0.86595 1.11982 1.16694 0.83477 0.85572 0.85643 1.90679 1.54074 1.45225 1.56691 1.42428 1.05746 1.09499 1.62289 1.19826 0.92455 0.84164 1.46272 0.87423 1.25333 0.95440 1.00280 0.96839 1.69562 1.02963 1.32271 1.49177 0.85770 0.77931 0.81414 0.78748 1.20171 1.20744 1.19142 1.20991 0.94814 0.93991 1.07118 1.20942 0.93965 0.94796 1.08638 1.18672 0.90434 0.84881 1.15261 1.17950 0.95614 0.90312 0.94027 1.21376 0.97028 0.96482 0.98209 1.21197 0.99272 0.93061 0.98461 1.21198 0.97233 1.00042 0.95420 1.21042 0.97084 0.93728 0.99105 1.21988 1.00577 0.95888 0.97398 1.96740 1.54059 1.91206 1.53076 0.89731 0.89414 0.88121 0.76816 0.91494 0.83770 0.84418 0.85050 0.85206 0.85186 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 9.36 59.85 0.56 1.39 16 2 N -0.42 -7.55 3.19 -115.75 -0.37 -7.92 16 3 C 0.01 0.21 6.87 -81.94 -0.56 -0.35 16 4 C 0.50 12.78 7.71 -12.97 -0.10 12.68 16 5 O -0.58 -16.71 16.46 5.13 0.08 -16.63 16 6 N -0.56 -14.49 5.11 -12.25 -0.06 -14.55 16 7 C -0.30 -8.24 9.67 -15.03 -0.15 -8.39 16 8 H 0.11 3.11 7.16 -52.49 -0.38 2.74 16 9 C 0.02 0.61 5.50 -17.45 -0.10 0.52 16 10 N -0.90 -23.34 13.05 55.50 0.72 -22.62 16 11 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 C -0.14 -2.78 10.61 -39.20 -0.42 -3.20 16 16 C -0.16 -2.64 9.10 -39.31 -0.36 -3.00 16 17 C 0.02 0.34 5.84 -82.04 -0.48 -0.14 16 18 C 0.02 0.32 5.49 -104.95 -0.58 -0.25 16 19 C -0.11 -1.28 8.29 -39.18 -0.32 -1.60 16 20 C -0.10 -0.92 10.03 -39.64 -0.40 -1.32 16 21 C -0.12 -1.02 10.04 -39.49 -0.40 -1.41 16 22 C -0.09 -0.88 9.78 -39.61 -0.39 -1.27 16 23 C -0.08 -0.97 6.25 -39.10 -0.24 -1.21 16 24 Br -0.04 -0.47 30.94 -68.01 -2.10 -2.57 16 25 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 26 H 0.09 1.13 5.47 -51.93 -0.28 0.84 16 27 H 0.10 1.81 6.01 -51.93 -0.31 1.50 16 28 H 0.39 9.34 3.53 -40.82 -0.14 9.20 16 29 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.14 2.71 8.06 -52.49 -0.42 2.28 16 31 H 0.14 2.01 7.61 -52.49 -0.40 1.61 16 32 H 0.13 1.43 7.25 -52.49 -0.38 1.05 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -31.29 319.82 -9.00 -40.28 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.14 Total: 11.29 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.92 Total: -7.56 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.29 Total: -45.08 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.08 Total: -16.63 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.10 Total: -2.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.29 -9.00 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.939 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds