Wall clock time and date at job start Tue Mar 31 2020 05:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 N 1.46503 * 109.47281 * 120.00216 * 2 1 3 5 5 C 1.34771 * 119.99943 * 85.00126 * 4 2 1 6 6 O 1.21596 * 119.99869 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00240 * 180.02562 * 5 4 2 8 8 C 1.39975 * 120.00362 * 185.33805 * 7 5 4 9 9 C 1.38974 * 120.00392 * 214.09584 * 8 7 5 10 10 C 1.38214 * 120.23052 * 180.02562 * 9 8 7 11 11 C 1.38019 * 120.21662 * 359.67715 * 10 9 8 12 12 C 1.39577 * 119.99606 * 0.59839 * 11 10 9 13 13 C 1.47861 * 120.11262 * 179.69964 * 12 11 10 14 14 O 1.21555 * 120.00099 * 157.07001 * 13 12 11 15 15 N 1.34772 * 119.99957 * 337.06584 * 13 12 11 16 16 C 1.46503 * 120.00082 * 221.62798 * 15 13 12 17 17 C 1.50705 * 109.46729 * 270.00114 * 16 15 13 18 18 H 1.08001 * 120.00116 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00141 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00069 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99703 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47195 * 90.00089 * 21 19 17 23 23 H 1.48499 * 109.47194 * 210.00216 * 21 19 17 24 24 H 1.48501 * 109.47106 * 330.00063 * 21 19 17 25 25 C 1.46504 * 120.00193 * 41.62200 * 15 13 12 26 26 C 1.52998 * 109.46964 * 267.03724 * 25 15 13 27 27 C 1.52997 * 109.46685 * 27.03684 * 25 15 13 28 28 C 1.38596 * 119.99562 * 34.11965 * 8 7 5 29 29 H 1.08997 * 109.47084 * 59.99587 * 1 2 3 30 30 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47140 * 299.99841 * 1 2 3 32 32 H 1.09003 * 109.47140 * 240.00159 * 2 1 3 33 33 H 1.09002 * 109.47397 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47402 * 300.00219 * 3 2 1 35 35 H 1.09003 * 109.46906 * 60.00016 * 3 2 1 36 36 H 0.96995 * 119.99518 * 264.99571 * 4 2 1 37 37 H 0.96997 * 119.99823 * 5.34139 * 7 5 4 38 38 H 1.08002 * 119.88672 * 0.02562 * 9 8 7 39 39 H 1.07998 * 119.88967 * 179.97438 * 10 9 8 40 40 H 1.08003 * 120.00477 * 180.30115 * 11 10 9 41 41 H 1.08992 * 109.47629 * 149.99782 * 16 15 13 42 42 H 1.08998 * 109.47187 * 29.99328 * 16 15 13 43 43 H 0.97007 * 119.99896 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.46811 * 147.03638 * 25 15 13 45 45 H 1.08996 * 109.47421 * 61.44122 * 26 25 15 46 46 H 1.09008 * 109.46809 * 181.44400 * 26 25 15 47 47 H 1.09002 * 109.47407 * 301.43639 * 26 25 15 48 48 H 1.09000 * 109.47093 * 103.12774 * 27 25 15 49 49 H 1.09000 * 109.47009 * 223.12097 * 27 25 15 50 50 H 1.08996 * 109.47518 * 343.12065 * 27 25 15 51 51 H 1.07998 * 120.11283 * 359.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -2.0322 1.1943 6 8 1.8583 -2.6693 0.1997 7 7 2.5959 -2.6677 2.2949 8 6 2.8360 -4.0462 2.2581 9 6 2.6035 -4.8224 3.3872 10 6 2.8395 -6.1839 3.3563 11 6 3.3013 -6.7828 2.2018 12 6 3.5434 -6.0112 1.0642 13 6 4.0445 -6.6492 -0.1720 14 8 3.8684 -6.1114 -1.2479 15 7 4.6964 -7.8268 -0.1060 16 6 5.8886 -8.0512 -0.9275 17 6 5.4811 -8.6385 -2.2542 18 1 4.4385 -8.8263 -2.4643 19 6 6.4394 -8.9371 -3.1995 20 7 6.0839 -9.4501 -4.3570 21 14 8.2428 -8.6130 -2.8358 22 1 8.8448 -9.8159 -2.2065 23 1 8.9560 -8.3074 -4.1020 24 1 8.3613 -7.4581 -1.9099 25 6 4.2131 -8.8827 0.7873 26 6 4.9283 -8.7769 2.1356 27 6 2.7058 -8.7239 0.9956 28 6 3.3060 -4.6370 1.0958 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2491 -0.1823 1.9894 37 1 2.7525 -2.1698 3.1124 38 1 2.2372 -4.3602 4.2920 39 1 2.6574 -6.7818 4.2371 40 1 3.4799 -7.8478 2.1800 41 1 6.5584 -8.7415 -0.4149 42 1 6.4003 -7.1029 -1.0918 43 1 6.7581 -9.6599 -5.0222 44 1 4.4180 -9.8566 0.3427 45 1 4.7029 -7.8130 2.5919 46 1 4.5875 -9.5780 2.7915 47 1 6.0042 -8.8644 1.9842 48 1 2.1761 -9.4632 0.3947 49 1 2.4668 -8.8730 2.0486 50 1 2.4004 -7.7226 0.6920 51 1 3.4872 -4.0355 0.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071186242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:54 Heat of formation + Delta-G solvation = 55.214516 kcal Electronic energy + Delta-G solvation = -31444.200145 eV Core-core repulsion = 27347.747646 eV Total energy + Delta-G solvation = -4096.452499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11832 -40.32338 -38.07558 -36.74133 -36.12861 -34.70334 -33.14634 -31.86854 -31.37886 -30.94833 -28.86579 -27.78432 -27.53982 -26.94111 -24.01312 -23.40808 -21.93787 -21.81114 -21.40327 -20.83142 -18.88866 -18.49526 -17.37136 -16.77274 -16.73146 -16.05022 -15.78136 -15.56084 -15.21629 -14.78178 -14.69887 -14.51586 -14.11538 -13.82278 -13.67990 -13.47290 -13.41981 -13.19728 -13.10394 -12.64526 -12.54036 -12.48735 -12.21273 -11.94473 -11.89834 -11.69798 -11.67111 -11.33497 -11.32521 -11.26693 -11.04726 -10.76796 -10.45877 -10.34261 -10.12090 -10.05960 -9.61242 -9.44691 -9.36449 -9.07290 -8.74928 -8.49382 -7.96564 -7.45679 -5.97519 -3.94568 1.07208 1.46260 2.36516 2.92414 3.27926 3.31270 3.39205 3.41519 3.76252 3.96149 4.07769 4.46765 4.53094 4.73954 4.84474 4.93056 4.93538 5.06978 5.12581 5.22732 5.23886 5.25998 5.34040 5.35499 5.45690 5.51459 5.58548 5.61639 5.67889 5.72950 5.78876 5.85805 5.90988 5.98246 6.01671 6.20908 6.23104 6.28268 6.39242 6.42344 6.48543 6.53177 6.65003 6.72391 6.78119 6.93878 7.06975 7.58100 7.70270 7.72838 8.36620 8.37907 8.57549 8.91196 9.12825 9.62595 11.16418 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003024 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.498662 B = 9256.538254 C =10920.838860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 C -0.160 4.160 4 N -0.740 5.740 5 C 0.698 3.302 6 O -0.559 6.559 7 N -0.686 5.686 8 C 0.145 3.855 9 C -0.131 4.131 10 C -0.123 4.123 11 C -0.165 4.165 12 C -0.115 4.115 13 C 0.566 3.434 14 O -0.491 6.491 15 N -0.621 5.621 16 C 0.227 3.773 17 C -0.520 4.520 18 H 0.078 0.922 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.872 3.128 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.141 3.859 26 C -0.215 4.215 27 C -0.184 4.184 28 C -0.066 4.066 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.394 0.606 37 H 0.404 0.596 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.210 0.790 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 16.311 21.928 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 C -0.217 4.217 4 N -0.396 5.396 5 C 0.398 3.602 6 O -0.433 6.433 7 N -0.334 5.334 8 C 0.051 3.949 9 C -0.152 4.152 10 C -0.142 4.142 11 C -0.181 4.181 12 C -0.119 4.119 13 C 0.353 3.647 14 O -0.364 6.364 15 N -0.356 5.356 16 C 0.107 3.893 17 C -0.559 4.559 18 H 0.096 0.904 19 C -0.133 4.133 20 N -0.538 5.538 21 Si 0.699 3.301 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.191 1.191 25 C 0.036 3.964 26 C -0.272 4.272 27 C -0.240 4.240 28 C -0.087 4.087 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.228 0.772 37 H 0.239 0.761 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.226 0.774 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.365 16.043 20.139 27.073 hybrid contribution 1.138 0.731 0.913 1.632 sum -7.227 16.774 21.052 27.871 Atomic orbital electron populations 1.22210 0.95339 1.02886 1.01875 1.20862 0.94021 0.92373 0.88025 1.22079 1.01849 0.94919 1.02895 1.45246 1.71822 1.04950 1.17534 1.16010 0.78434 0.82160 0.83596 1.91061 1.54713 1.65009 1.32529 1.42527 1.69818 1.07122 1.13970 1.17264 1.00377 0.81934 0.95343 1.20929 1.02507 0.94150 0.97566 1.20868 1.01234 0.93801 0.98267 1.24271 0.96448 1.05883 0.91534 1.20403 1.02316 0.93872 0.95312 1.18051 0.77686 0.81500 0.87470 1.90785 1.50416 1.65250 1.29958 1.47487 1.31132 1.12506 1.44484 1.19565 0.82233 0.96603 0.90894 1.21447 0.96214 1.40582 0.97634 0.90374 1.24897 0.98606 0.94847 0.94935 1.69907 1.33725 1.43898 1.06245 0.86920 0.85955 0.79063 0.78185 1.20131 1.21042 1.19110 1.20990 0.92486 0.93046 0.89841 1.23302 1.02440 1.03646 0.97844 1.22984 0.95724 1.03983 1.01356 1.21258 0.95214 0.94335 0.97887 0.91524 0.91841 0.92719 0.88979 0.91878 0.90685 0.92197 0.77231 0.76142 0.86032 0.85461 0.77414 0.95432 0.95566 0.92748 0.88653 0.88769 0.91618 0.91673 0.91957 0.90922 0.90443 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 2 C 0.15 1.32 3.18 -67.93 -0.22 1.10 16 3 C -0.16 -0.90 9.38 37.16 0.35 -0.55 16 4 N -0.74 -6.37 5.08 -58.67 -0.30 -6.67 16 5 C 0.70 8.96 8.26 -86.92 -0.72 8.24 16 6 O -0.56 -10.18 13.74 5.28 0.07 -10.10 16 7 N -0.69 -7.27 5.35 -14.25 -0.08 -7.34 16 8 C 0.14 1.96 6.26 -83.73 -0.52 1.43 16 9 C -0.13 -1.42 9.95 -39.32 -0.39 -1.81 16 10 C -0.12 -1.35 10.02 -39.67 -0.40 -1.75 16 11 C -0.16 -2.28 4.51 -39.16 -0.18 -2.46 16 12 C -0.11 -2.07 5.11 -104.99 -0.54 -2.61 16 13 C 0.57 12.81 5.64 -12.32 -0.07 12.74 16 14 O -0.49 -13.53 16.91 5.32 0.09 -13.44 16 15 N -0.62 -13.48 2.42 -168.57 -0.41 -13.89 16 16 C 0.23 5.70 4.25 -5.19 -0.02 5.68 16 17 C -0.52 -15.51 9.80 -34.44 -0.34 -15.85 16 18 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -28.64 13.96 55.43 0.77 -27.87 16 21 Si 0.87 21.90 27.47 -169.99 -4.67 17.23 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 25 C 0.14 2.35 3.13 -67.93 -0.21 2.13 16 26 C -0.21 -2.74 8.59 37.16 0.32 -2.42 16 27 C -0.18 -2.69 7.92 37.16 0.29 -2.40 16 28 C -0.07 -1.17 8.19 -38.98 -0.32 -1.48 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.39 2.00 8.62 -40.82 -0.35 1.65 16 37 H 0.40 2.52 8.84 -40.82 -0.36 2.16 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.21 2.66 0.64 -100.11 -0.06 2.59 16 41 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 42 H 0.03 0.69 7.09 -51.93 -0.37 0.33 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.10 1.66 8.09 -51.93 -0.42 1.24 16 45 H 0.09 1.16 4.12 -53.81 -0.22 0.94 16 46 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 50 H 0.08 1.32 4.07 -51.93 -0.21 1.11 16 51 H 0.14 2.95 6.23 -52.49 -0.33 2.62 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -39.40 399.93 -8.88 -48.28 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.69 Total: 6.81 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.70 Total: 0.96 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.01 Total: -55.77 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.54 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -39.40 -8.88 -48.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071186242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.493 kcal (2) G-P(sol) polarization free energy of solvation -39.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds