Wall clock time and date at job start Tue Mar 31 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34692 * 117.00064 * 2 1 4 4 O 1.21443 * 119.99480 * 359.97438 * 3 2 1 5 5 C 1.47954 * 120.00198 * 179.97438 * 3 2 1 6 6 C 1.40093 * 119.75655 * 359.97438 * 5 3 2 7 7 C 1.36529 * 120.59882 * 179.97438 * 6 5 3 8 8 C 1.39455 * 119.88526 * 0.02562 * 7 6 5 9 9 C 1.41310 * 120.23983 * 0.02562 * 8 7 6 10 10 C 1.38913 * 119.75726 * 179.97438 * 5 3 2 11 11 N 1.35383 * 119.16637 * 180.02562 * 9 8 7 12 12 C 1.31013 * 121.57306 * 359.97438 * 11 9 8 13 13 S 1.76195 * 118.47449 * 179.97438 * 12 11 9 14 14 N 1.36559 * 123.05639 * 0.02562 * 12 11 9 15 15 N 1.40099 * 119.73354 * 180.02562 * 14 12 11 16 16 C 1.34775 * 120.00031 * 74.99824 * 15 14 12 17 17 O 1.21684 * 120.00361 * 0.02562 * 16 15 14 18 18 C 1.46374 * 120.00045 * 179.97438 * 16 15 14 19 19 H 1.07998 * 119.99700 * 359.97438 * 18 16 15 20 20 C 1.40049 * 120.00400 * 180.02562 * 18 16 15 21 21 N 1.30668 * 119.99514 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 120.00278 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47050 * 59.99620 * 22 20 18 24 24 H 1.48502 * 109.47088 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47108 * 299.99799 * 22 20 18 26 26 C 1.35296 * 120.53192 * 0.27632 * 14 12 11 27 27 O 1.21708 * 121.21335 * 179.75938 * 26 14 12 28 28 H 1.08995 * 109.46819 * 60.00433 * 1 2 3 29 29 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47250 * 300.00585 * 1 2 3 31 31 H 1.07997 * 119.70358 * 359.97438 * 6 5 3 32 32 H 1.07994 * 120.06135 * 179.97438 * 7 6 5 33 33 H 1.07998 * 120.28405 * 0.02562 * 10 5 3 34 34 H 1.40998 * 100.00024 * 359.97438 * 13 12 11 35 35 H 0.96999 * 119.99346 * 254.99811 * 15 14 12 36 36 H 0.97006 * 120.00087 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4020 2.2186 -0.0005 5 6 3.5411 1.2776 0.0006 6 6 4.2991 0.0994 0.0017 7 6 5.6634 0.1509 0.0017 8 6 6.3122 1.3853 0.0011 9 6 5.5627 2.5832 0.0011 10 6 4.1664 2.5180 0.0000 11 7 6.2149 3.7696 0.0001 12 6 7.5235 3.8330 -0.0004 13 16 8.2876 5.4206 -0.0025 14 7 8.3229 2.7258 -0.0005 15 7 9.7159 2.8746 -0.0005 16 6 10.3539 3.2466 1.1269 17 8 9.7201 3.4527 2.1450 18 6 11.8094 3.4015 1.1271 19 1 12.3721 3.2173 0.2238 20 6 12.4725 3.7875 2.2987 21 7 11.7917 4.0098 3.3916 22 14 14.3299 3.9858 2.2986 23 1 14.7169 5.0232 1.3090 24 1 14.7837 4.3987 3.6510 25 1 14.9657 2.6938 1.9357 26 6 7.7804 1.4864 -0.0056 27 8 8.4811 0.4913 -0.0100 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.7998 -0.8582 0.0025 32 1 6.2392 -0.7628 0.0029 33 1 3.5789 3.4241 -0.0004 34 1 7.1426 6.2434 -0.0037 35 1 10.2212 2.7099 -0.8119 36 1 12.2510 4.2768 4.2033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071289291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:27 Heat of formation + Delta-G solvation = -53.729809 kcal Electronic energy + Delta-G solvation = -27331.866667 eV Core-core repulsion = 23102.799002 eV Total energy + Delta-G solvation = -4229.067665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.061 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42859 -40.62751 -38.65065 -37.53230 -36.90059 -36.58250 -34.38481 -32.67565 -31.81229 -30.88682 -30.03137 -28.15669 -26.55770 -25.12708 -24.89862 -22.34162 -21.86458 -20.83260 -19.68031 -18.75007 -18.38718 -17.81928 -17.52930 -16.97398 -16.63287 -16.00031 -15.84560 -15.73788 -15.23925 -14.96288 -14.33484 -14.16179 -14.08533 -13.98081 -13.73270 -13.25687 -12.91769 -12.81203 -12.69475 -12.49029 -12.43422 -11.96107 -11.50304 -11.14298 -11.10926 -11.01837 -10.83967 -10.78683 -10.49307 -10.26627 -10.18303 -10.09959 -9.37885 -9.09891 -8.81306 -8.41008 -7.98787 -7.61560 -6.45576 -4.94596 0.10929 0.55139 1.08765 1.96030 2.01607 2.12350 2.30472 2.43866 2.93483 3.06099 3.11940 3.14027 3.88897 3.94954 4.09797 4.22030 4.31095 4.46371 4.57971 4.78919 4.86342 4.88010 4.92602 5.06207 5.18738 5.39046 5.47009 5.69259 5.87006 5.99307 6.04581 6.06730 6.39556 6.62746 7.19100 7.25912 7.42201 7.43312 7.67178 7.95334 8.13305 8.73227 8.93012 10.21095 10.44818 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.002629 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.948479 B =10647.630760 C =11230.224471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.512 3.488 4 O -0.500 6.500 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.042 4.042 8 C -0.170 4.170 9 C 0.175 3.825 10 C -0.052 4.052 11 N -0.556 5.556 12 C 0.424 3.576 13 S 0.046 5.954 14 N -0.314 5.314 15 N -0.554 5.554 16 C 0.551 3.449 17 O -0.549 6.549 18 C -0.521 4.521 19 H 0.078 0.922 20 C 0.088 3.912 21 N -0.757 5.757 22 Si 0.920 3.080 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C 0.553 3.447 27 O -0.489 6.489 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.106 0.894 35 H 0.410 0.590 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 -3.741 -8.775 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.356 3.644 4 O -0.388 6.388 5 C -0.084 4.084 6 C -0.124 4.124 7 C -0.061 4.061 8 C -0.180 4.180 9 C 0.060 3.940 10 C -0.072 4.072 11 N -0.287 5.287 12 C 0.051 3.949 13 S 0.206 5.794 14 N -0.122 5.122 15 N -0.312 5.312 16 C 0.357 3.643 17 O -0.426 6.426 18 C -0.559 4.559 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.385 5.385 22 Si 0.743 3.257 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.190 1.190 26 C 0.343 3.657 27 O -0.360 6.360 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.070 0.930 35 H 0.250 0.750 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.393 -2.509 -7.783 16.554 hybrid contribution 0.006 -1.022 -0.255 1.053 sum -14.387 -3.530 -8.039 16.854 Atomic orbital electron populations 1.23313 0.75753 1.03901 1.02761 1.86544 1.23689 1.32385 1.84216 1.21189 0.88946 0.81532 0.72737 1.90843 1.66674 1.36028 1.45283 1.19020 0.89033 0.94566 1.05759 1.20991 0.93247 0.97953 1.00167 1.20701 0.94034 0.96787 0.94572 1.20850 0.91957 0.95706 1.09442 1.18547 0.93336 0.87496 0.94653 1.20816 0.91550 0.97389 0.97470 1.69338 1.03172 1.25646 1.30594 1.24828 0.88767 0.92684 0.88664 1.87991 1.09806 0.92731 1.88899 1.45201 1.00833 1.04650 1.61555 1.47138 0.88189 1.78803 1.17087 1.19005 0.88305 0.76913 0.80087 1.90684 1.66425 1.54563 1.30943 1.20551 0.87587 1.49590 0.98168 0.90378 1.25715 1.00394 0.92801 0.94528 1.69982 1.37096 1.30902 1.00491 0.86222 0.81654 0.79612 0.78179 1.18881 1.20369 1.19017 1.18605 0.87804 0.82157 0.77093 1.90859 1.63095 1.34395 1.47624 0.91714 0.87819 0.91689 0.83667 0.83590 0.83041 0.93004 0.74961 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.54 9.78 -40.47 -0.40 -3.94 16 3 C 0.51 6.31 7.90 34.71 0.27 6.59 16 4 O -0.50 -7.21 16.10 -19.22 -0.31 -7.52 16 5 C -0.08 -1.04 5.87 -104.97 -0.62 -1.66 16 6 C -0.10 -1.21 9.53 -39.50 -0.38 -1.58 16 7 C -0.04 -0.57 9.60 -39.75 -0.38 -0.95 16 8 C -0.17 -2.92 5.90 -104.65 -0.62 -3.54 16 9 C 0.17 2.92 6.63 -84.56 -0.56 2.36 16 10 C -0.05 -0.74 9.58 -38.76 -0.37 -1.11 16 11 N -0.56 -9.89 10.26 -10.81 -0.11 -10.00 16 12 C 0.42 8.06 7.58 -88.55 -0.67 7.39 16 13 S 0.05 0.77 24.13 -107.50 -2.59 -1.82 16 14 N -0.31 -6.52 2.92 -13.02 -0.04 -6.55 16 15 N -0.55 -12.04 4.85 30.19 0.15 -11.89 16 16 C 0.55 14.40 6.80 -12.99 -0.09 14.32 16 17 O -0.55 -16.45 14.92 5.20 0.08 -16.37 16 18 C -0.52 -13.33 9.54 -35.63 -0.34 -13.67 16 19 H 0.08 1.78 7.85 -52.49 -0.41 1.37 16 20 C 0.09 2.24 5.50 -17.37 -0.10 2.14 16 21 N -0.76 -21.02 11.83 55.55 0.66 -20.37 16 22 Si 0.92 18.60 29.56 -169.99 -5.02 13.57 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 C 0.55 11.30 7.79 -12.40 -0.10 11.21 16 27 O -0.49 -10.90 17.00 5.18 0.09 -10.81 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.15 1.28 7.57 -52.49 -0.40 0.88 16 32 H 0.15 1.84 7.80 -52.49 -0.41 1.43 16 33 H 0.15 2.08 7.62 -52.49 -0.40 1.68 16 34 H 0.11 1.42 9.50 96.90 0.92 2.34 16 35 H 0.41 7.65 8.81 -182.60 -1.61 6.05 16 36 H 0.27 6.94 8.29 -40.82 -0.34 6.61 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -34.20 347.31 -7.85 -42.05 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -2.71 Total: 5.59 kcal Atomic # 6 Polarization: 25.69 SS G_CDS: -2.87 Total: 22.82 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.65 Total: -48.81 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.54 Total: -38.64 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.59 Total: -1.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.20 -7.85 -42.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071289291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.676 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds