Wall clock time and date at job start Tue Mar 31 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30837 * 125.89733 * 2 1 4 4 N 1.40086 * 108.20700 * 180.02562 * 3 2 1 5 5 C 1.46491 * 126.04129 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.34955 * 107.92007 * 0.26426 * 4 3 2 15 15 C 1.50708 * 126.12162 * 179.73553 * 14 4 3 16 16 C 1.35316 * 107.74718 * 359.57319 * 14 4 3 17 17 C 1.50702 * 126.03724 * 180.15850 * 16 14 4 18 18 C 1.52994 * 109.47305 * 270.33605 * 17 16 14 19 19 C 1.50701 * 109.47022 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00012 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99984 * 180.02562 * 19 18 17 22 22 C 1.47155 * 120.98200 * 359.97438 * 21 19 18 23 23 C 1.53296 * 108.38647 * 129.44659 * 22 21 19 24 24 O 1.42960 * 109.22218 * 52.30127 * 23 22 21 25 25 C 1.42964 * 114.16561 * 297.41916 * 24 23 22 26 26 C 1.52999 * 109.51158 * 182.50649 * 25 24 23 27 27 C 1.52999 * 109.51680 * 302.60933 * 25 24 23 28 28 C 1.47153 * 120.98538 * 179.71580 * 21 19 18 29 29 H 1.08998 * 109.46935 * 89.97723 * 1 2 3 30 30 H 1.08998 * 109.46987 * 209.97876 * 1 2 3 31 31 H 1.09001 * 109.47100 * 329.98051 * 1 2 3 32 32 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 33 33 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47042 * 90.02700 * 15 14 4 36 36 H 1.09007 * 109.46511 * 210.02061 * 15 14 4 37 37 H 1.08991 * 109.47237 * 330.02091 * 15 14 4 38 38 H 1.08998 * 109.47041 * 30.34192 * 17 16 14 39 39 H 1.09004 * 109.46393 * 150.33504 * 17 16 14 40 40 H 1.09004 * 109.47030 * 299.99843 * 18 17 16 41 41 H 1.08999 * 109.47458 * 60.00070 * 18 17 16 42 42 H 1.09001 * 109.68204 * 249.17224 * 22 21 19 43 43 H 1.09001 * 109.68489 * 9.71740 * 22 21 19 44 44 H 1.08997 * 109.51542 * 172.22673 * 23 22 21 45 45 H 1.09003 * 109.50639 * 292.37744 * 23 22 21 46 46 H 1.09001 * 109.47235 * 59.99932 * 26 25 24 47 47 H 1.09001 * 109.47097 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47048 * 300.00068 * 26 25 24 49 49 H 1.08996 * 109.47149 * 59.99857 * 27 25 24 50 50 H 1.08991 * 109.47273 * 180.02562 * 27 25 24 51 51 H 1.09004 * 109.46682 * 300.00197 * 27 25 24 52 52 H 1.09005 * 109.67798 * 350.28222 * 28 21 19 53 53 H 1.09003 * 109.68059 * 110.82529 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 5.1960 1.7976 1.4193 7 1 4.6310 1.3820 2.2405 8 6 6.2925 2.5949 1.6706 9 7 6.9807 3.1007 0.6705 10 14 6.8004 2.9565 3.4314 11 1 7.7592 1.9206 3.8928 12 1 7.4460 4.2923 3.4959 13 1 5.5999 2.9442 4.3054 14 6 3.6142 -0.7153 -0.0069 15 6 4.8351 -1.5988 -0.0153 16 6 2.3271 -1.1330 -0.0006 17 6 1.8600 -2.5658 -0.0008 18 6 1.7019 -3.0504 -1.4433 19 6 1.2341 -4.4830 -1.4435 20 8 1.0462 -5.0597 -0.3933 21 7 1.0256 -5.1237 -2.6108 22 6 1.2474 -4.4450 -3.8975 23 6 2.1378 -5.3387 -4.7684 24 8 1.5709 -6.6495 -4.8315 25 6 1.4934 -7.3150 -3.5685 26 6 0.9319 -8.7243 -3.7672 27 6 2.8904 -7.4039 -2.9511 28 6 0.5749 -6.5242 -2.6363 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 4.5559 2.4334 -0.5148 33 1 5.6089 0.9984 -0.5158 34 1 7.7520 3.6619 0.8473 35 1 5.1329 -1.8170 1.0103 36 1 4.6059 -2.5303 -0.5331 37 1 5.6494 -1.0884 -0.5294 38 1 2.5934 -3.1872 0.5130 39 1 0.9012 -2.6353 0.5130 40 1 0.9683 -2.4290 -1.9571 41 1 2.6606 -2.9808 -1.9572 42 1 0.2918 -4.2817 -4.3959 43 1 1.7415 -3.4884 -3.7277 44 1 2.2015 -4.9208 -5.7731 45 1 3.1353 -5.3939 -4.3324 46 1 1.5866 -9.2857 -4.4337 47 1 0.8727 -9.2310 -2.8039 48 1 -0.0641 -8.6602 -4.2054 49 1 3.2891 -6.3996 -2.8082 50 1 2.8306 -7.9118 -1.9886 51 1 3.5469 -7.9641 -3.6169 52 1 0.6239 -6.9439 -1.6315 53 1 -0.4495 -6.5735 -3.0057 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071843095.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:55 Heat of formation + Delta-G solvation = -43.735053 kcal Electronic energy + Delta-G solvation = -31643.614958 eV Core-core repulsion = 27515.560205 eV Total energy + Delta-G solvation = -4128.054753 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 349.215 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.17999 -41.57725 -39.69058 -36.11691 -35.85254 -35.02535 -34.57031 -34.19129 -31.78675 -30.52437 -30.11136 -28.71056 -28.31886 -27.62606 -27.09316 -25.05669 -24.36380 -23.70129 -21.02180 -20.32960 -20.19440 -19.85855 -18.82680 -18.25482 -17.68454 -17.28477 -16.85537 -16.78150 -16.26563 -16.03893 -15.90920 -15.80885 -15.20998 -14.96199 -14.62828 -14.58750 -14.38650 -14.23682 -14.05957 -13.86026 -13.61214 -13.42718 -13.35244 -13.26117 -13.16430 -13.05530 -12.95478 -12.88053 -12.83366 -12.65167 -12.63386 -12.57802 -12.42647 -12.25114 -12.20329 -11.88758 -11.71929 -11.53909 -11.15806 -11.04742 -10.76062 -10.75424 -9.84256 -9.53866 -9.03310 -8.35798 -6.53237 1.17022 1.34670 1.35976 1.47248 1.61212 1.78831 1.93855 2.02933 2.32315 2.74261 2.93703 3.50005 3.66143 3.84309 3.86664 3.93178 3.97641 4.02262 4.15258 4.19501 4.23495 4.31313 4.32989 4.46982 4.57013 4.59165 4.63986 4.69024 4.69999 4.72028 4.77769 4.79069 4.82242 4.86655 4.88437 4.90173 4.92610 4.94949 4.97973 5.03182 5.13407 5.19203 5.26183 5.29939 5.43121 5.43988 5.49619 5.55804 5.79718 6.04969 6.21222 6.31318 6.31921 6.61707 7.11463 7.14178 7.18048 8.70146 Molecular weight = 349.22amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.002182 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.367994 B =12826.265631 C =13330.056938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.264 1.264 12 H -0.273 1.273 13 H -0.277 1.277 14 C 0.079 3.921 15 C -0.082 4.082 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.123 4.123 19 C 0.519 3.481 20 O -0.576 6.576 21 N -0.615 5.615 22 C 0.068 3.932 23 C 0.040 3.960 24 O -0.383 6.383 25 C 0.099 3.901 26 C -0.135 4.135 27 C -0.173 4.173 28 C 0.088 3.912 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.274 0.726 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.087 0.913 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -22.317 -12.531 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.173 5.173 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.189 1.189 12 H -0.198 1.198 13 H -0.202 1.202 14 C -0.051 4.051 15 C -0.140 4.140 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.163 4.163 19 C 0.310 3.690 20 O -0.456 6.456 21 N -0.349 5.349 22 C -0.054 4.054 23 C -0.037 4.037 24 O -0.303 6.303 25 C 0.059 3.941 26 C -0.192 4.192 27 C -0.230 4.230 28 C -0.035 4.035 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.145 0.855 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.105 0.895 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.194 -21.183 -12.206 26.889 hybrid contribution 0.715 0.210 1.124 1.349 sum -10.479 -20.974 -11.082 25.933 Atomic orbital electron populations 1.20209 0.84755 1.03391 1.03788 1.22768 0.98090 0.90190 0.99961 1.77218 0.87799 1.24993 1.27315 1.48999 1.05331 1.05153 1.54004 1.19121 0.79033 0.88752 0.97470 1.21422 1.13224 1.32573 0.91861 0.93579 1.25735 0.95475 0.94478 1.02215 1.69999 1.19262 1.33376 1.32922 0.85375 0.78326 0.78276 0.78639 1.18861 1.19778 1.20231 1.21442 0.98130 0.84674 1.00811 1.20435 0.92308 0.97859 1.03444 1.19675 0.90353 0.96387 1.20448 1.19348 1.01274 0.88471 0.95100 1.21663 1.04047 0.91029 0.99561 1.21092 0.75992 0.89347 0.82612 1.90675 1.53441 1.69259 1.32230 1.48233 1.67190 1.13066 1.06421 1.22676 1.02132 0.97398 0.83186 1.23155 0.95847 0.82508 1.02187 1.87998 1.83230 1.29387 1.29657 1.21860 0.94816 0.93659 0.83769 1.21738 1.01874 0.92129 1.03482 1.22340 0.96710 1.02268 1.01692 1.22242 0.98383 0.81341 1.01486 0.88990 0.89147 0.91732 0.96262 0.93446 0.91725 0.90646 0.87634 0.91759 0.91909 0.91164 0.87313 0.87801 0.89292 0.87039 0.85473 0.92299 0.91031 0.89784 0.91225 0.92985 0.91391 0.91084 0.89466 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.64 10.26 71.24 0.73 -0.91 16 2 C 0.05 2.01 7.22 43.10 0.31 2.32 16 3 N -0.35 -16.26 12.58 -47.38 -0.60 -16.86 16 4 N -0.35 -16.88 3.60 -338.41 -1.22 -18.09 16 5 C 0.28 14.67 6.00 85.64 0.51 15.19 16 6 C -0.55 -31.45 9.39 25.60 0.24 -31.21 16 7 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 8 C 0.02 1.22 5.46 84.66 0.46 1.68 16 9 N -0.92 -52.20 13.29 21.45 0.28 -51.92 16 10 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.08 3.09 6.93 41.41 0.29 3.37 16 15 C -0.08 -2.61 9.72 71.24 0.69 -1.92 16 16 C -0.26 -8.73 5.35 -20.14 -0.11 -8.84 16 17 C 0.00 -0.08 4.41 29.85 0.13 0.05 16 18 C -0.12 -2.46 4.06 29.85 0.12 -2.34 16 19 C 0.52 11.44 7.71 87.66 0.68 12.11 16 20 O -0.58 -17.08 15.45 -3.03 -0.05 -17.13 16 21 N -0.62 -10.51 2.55 -818.07 -2.08 -12.60 16 22 C 0.07 0.79 6.54 86.35 0.57 1.35 16 23 C 0.04 0.45 6.60 72.08 0.48 0.93 16 24 O -0.38 -5.87 10.23 -148.98 -1.52 -7.39 16 25 C 0.10 1.40 1.11 -10.82 -0.01 1.39 16 26 C -0.13 -1.41 8.85 71.98 0.64 -0.78 16 27 C -0.17 -2.53 8.08 71.98 0.58 -1.95 16 28 C 0.09 1.45 5.28 86.22 0.45 1.90 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.98 7.25 -2.39 -0.02 1.97 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.05 2.50 7.04 -2.39 -0.02 2.48 16 34 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.11 2.51 7.79 -2.38 -0.02 2.49 16 37 H 0.06 2.13 7.07 -2.39 -0.02 2.11 16 38 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 39 H 0.07 1.88 7.21 -2.38 -0.02 1.86 16 40 H 0.11 1.85 8.02 -2.38 -0.02 1.83 16 41 H 0.10 1.83 7.66 -2.39 -0.02 1.81 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 1.02 6.05 -2.39 -0.01 1.01 16 44 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.71 6.25 -2.39 -0.01 0.69 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.05 0.86 6.12 -2.39 -0.01 0.85 16 50 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.09 1.69 7.07 -2.38 -0.02 1.67 16 53 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.05 420.62 4.50 -68.56 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.89 Total: 17.42 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 6.76 Total: -7.65 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -3.61 Total: -99.46 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.57 Total: -24.52 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -73.05 4.50 -68.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071843095.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.822 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds