Wall clock time and date at job start Tue Mar 31 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47527 * 2 1 4 4 O 1.42900 * 109.47229 * 239.99992 * 2 1 3 5 5 C 1.53004 * 109.47305 * 120.00092 * 2 1 3 6 6 N 1.46895 * 109.47366 * 185.86259 * 5 2 1 7 7 C 1.46901 * 110.99888 * 284.21097 * 6 5 2 8 8 C 1.53239 * 109.34188 * 187.25010 * 7 6 5 9 9 N 1.47079 * 108.52423 * 306.17397 * 8 7 6 10 10 C 1.34773 * 120.88027 * 231.18416 * 9 8 7 11 11 O 1.21282 * 120.00249 * 0.02562 * 10 9 8 12 12 C 1.50695 * 120.00055 * 179.97438 * 10 9 8 13 13 O 1.42905 * 109.47373 * 180.02562 * 12 10 9 14 14 C 1.35675 * 116.99818 * 180.02562 * 13 12 10 15 15 C 1.39311 * 119.81395 * 179.97438 * 14 13 12 16 16 C 1.36442 * 120.18546 * 179.72447 * 15 14 13 17 17 C 1.40823 * 119.81144 * 0.27434 * 16 15 14 18 18 C 1.41217 * 120.18481 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00499 * 204.93373 * 18 17 16 20 20 C 1.39888 * 119.99277 * 24.92712 * 18 17 16 21 21 N 1.30882 * 120.00346 * 17.73279 * 20 18 17 22 22 Si 1.86803 * 120.00000 * 197.72391 * 20 18 17 23 23 H 1.48505 * 109.47003 * 60.00349 * 22 20 18 24 24 H 1.48497 * 109.47248 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47354 * 300.00427 * 22 20 18 26 26 C 1.40840 * 119.64081 * 0.02562 * 17 16 15 27 27 C 1.36436 * 119.80940 * 359.97438 * 26 17 16 28 28 C 1.47076 * 118.23800 * 51.45526 * 9 8 7 29 29 C 1.46904 * 111.00189 * 48.51193 * 6 5 2 30 30 H 1.09007 * 109.46961 * 300.00284 * 1 2 3 31 31 H 1.08996 * 109.46744 * 59.99705 * 1 2 3 32 32 H 1.08994 * 109.46999 * 180.02562 * 1 2 3 33 33 H 0.96699 * 114.00124 * 299.99696 * 4 2 1 34 34 H 1.08995 * 109.47207 * 65.85587 * 5 2 1 35 35 H 1.09002 * 109.46779 * 305.85675 * 5 2 1 36 36 H 1.09004 * 109.49380 * 67.29660 * 7 6 5 37 37 H 1.08993 * 109.49493 * 307.21395 * 7 6 5 38 38 H 1.08996 * 109.63235 * 186.45652 * 8 7 6 39 39 H 1.09005 * 109.62321 * 65.88517 * 8 7 6 40 40 H 1.09004 * 109.47300 * 60.00316 * 12 10 9 41 41 H 1.09000 * 109.47516 * 300.00049 * 12 10 9 42 42 H 1.08006 * 119.90595 * 359.97438 * 15 14 13 43 43 H 1.07995 * 120.09179 * 180.29673 * 16 15 14 44 44 H 0.97000 * 120.00066 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.09118 * 180.02562 * 26 17 16 46 46 H 1.08004 * 119.90141 * 180.02562 * 27 26 17 47 47 H 1.08995 * 109.63150 * 68.25036 * 28 9 8 48 48 H 1.09000 * 109.62988 * 188.83350 * 28 9 8 49 49 H 1.09002 * 109.48862 * 292.70870 * 29 6 5 50 50 H 1.08997 * 109.49233 * 52.75918 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5022 -0.6000 1.3221 7 6 4.1536 -1.5010 0.3620 8 6 5.6684 -1.4792 0.5928 9 7 6.1281 -0.0829 0.5459 10 6 7.1606 0.2793 -0.2410 11 8 7.7235 -0.5506 -0.9231 12 6 7.6149 1.7157 -0.2742 13 8 8.7154 1.8466 -1.1763 14 6 9.2475 3.0860 -1.3231 15 6 10.3227 3.2803 -2.1874 16 6 10.8600 4.5246 -2.3450 17 6 10.3283 5.6129 -1.6267 18 6 10.8780 6.9041 -1.7842 19 1 10.7779 7.6338 -0.9943 20 6 11.5523 7.2380 -2.9635 21 7 11.3864 6.5125 -4.0402 22 14 12.6895 8.7194 -3.0018 23 1 13.7766 8.5349 -2.0070 24 1 13.2776 8.8571 -4.3584 25 1 11.9182 9.9443 -2.6706 26 6 9.2454 5.4066 -0.7502 27 6 8.7197 4.1561 -0.6041 28 6 5.4352 0.9064 1.3851 29 6 3.9258 0.7919 1.1186 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.7211 -1.5952 -1.2329 34 1 1.7649 -1.7747 1.1984 35 1 1.5936 -0.2715 2.1361 36 1 3.9357 -1.1698 -0.6533 37 1 3.7788 -2.5148 0.5026 38 1 6.1660 -2.0550 -0.1875 39 1 5.8961 -1.9072 1.5691 40 1 7.9253 2.0219 0.7249 41 1 6.7935 2.3490 -0.6094 42 1 10.7294 2.4445 -2.7372 43 1 11.6904 4.6743 -3.0191 44 1 11.8543 6.7438 -4.8578 45 1 8.8317 6.2362 -0.1960 46 1 7.8890 3.9963 0.0674 47 1 5.6409 0.7034 2.4360 48 1 5.7786 1.9087 1.1288 49 1 3.7110 1.0911 0.0927 50 1 3.3854 1.4409 1.8076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071871377.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:16 Heat of formation + Delta-G solvation = -84.985966 kcal Electronic energy + Delta-G solvation = -30478.448629 eV Core-core repulsion = 26278.197919 eV Total energy + Delta-G solvation = -4200.250710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.54860 -39.33626 -38.44285 -37.02595 -36.21783 -34.56920 -33.32590 -32.06896 -31.31944 -30.01752 -29.17567 -28.78256 -27.41464 -24.91807 -24.63530 -24.10318 -22.52443 -21.49629 -20.83574 -20.55633 -18.97157 -17.75956 -17.26285 -17.00499 -16.60821 -16.41902 -15.99697 -15.82670 -15.52631 -15.35014 -15.16398 -14.89115 -14.59135 -14.38640 -13.95042 -13.64852 -13.35319 -13.10757 -12.92366 -12.82033 -12.74657 -12.36734 -12.20262 -12.12012 -12.07377 -11.84080 -11.71344 -11.50616 -11.47911 -11.37950 -11.25707 -11.10438 -10.91544 -10.78899 -10.66402 -10.01607 -9.85074 -9.65864 -9.30691 -9.02494 -8.95480 -8.41529 -7.64409 -7.03945 -6.71690 -4.25646 2.63435 2.64756 2.79450 2.95146 3.08855 3.10976 3.22573 3.47636 3.84127 3.95543 4.05410 4.19663 4.50782 4.52522 4.61987 4.62150 4.66372 4.72520 4.84907 4.96313 5.03065 5.12519 5.21684 5.23917 5.28408 5.31566 5.34924 5.41655 5.51331 5.56331 5.59593 5.63201 5.67442 5.86849 6.01936 6.20968 6.29727 6.54828 6.61698 6.72067 6.97045 7.09808 7.13228 7.17863 7.24107 7.45602 7.55593 7.77256 8.00617 8.16672 8.22014 8.43521 8.64450 8.89997 8.98222 10.22859 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.001911 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.341888 B =14651.962939 C =15292.151712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.060 3.940 3 H 0.103 0.897 4 O -0.557 6.557 5 C 0.024 3.976 6 N -0.530 5.530 7 C 0.029 3.971 8 C 0.119 3.881 9 N -0.616 5.616 10 C 0.520 3.480 11 O -0.517 6.517 12 C 0.054 3.946 13 O -0.304 6.304 14 C -0.011 4.011 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.089 3.911 18 C -0.463 4.463 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.198 4.198 27 C -0.168 4.168 28 C 0.111 3.889 29 C 0.033 3.967 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.373 0.627 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.281 0.719 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.051 0.949 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.053 -12.981 10.963 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.000 4.000 3 H 0.121 0.879 4 O -0.363 6.363 5 C -0.104 4.104 6 N -0.254 5.254 7 C -0.099 4.099 8 C -0.004 4.004 9 N -0.354 5.354 10 C 0.308 3.692 11 O -0.391 6.391 12 C -0.026 4.026 13 O -0.218 6.218 14 C -0.054 4.054 15 C -0.134 4.134 16 C -0.152 4.152 17 C 0.087 3.913 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.424 5.424 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.218 4.218 27 C -0.187 4.187 28 C -0.013 4.013 29 C -0.095 4.095 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.220 0.780 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.069 0.931 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.149 -13.164 10.581 25.533 hybrid contribution -0.452 0.674 -0.480 0.943 sum -19.601 -12.490 10.101 25.342 Atomic orbital electron populations 1.22445 0.96103 1.02567 1.02991 1.22782 0.93624 0.97928 0.85710 0.87927 1.86664 1.76408 1.29085 1.44107 1.22966 0.88243 1.01429 0.97800 1.62202 1.05737 1.06565 1.50865 1.22744 0.93950 0.96976 0.96218 1.21659 0.93349 0.82458 1.02925 1.48028 1.33330 1.09643 1.44358 1.20419 0.79361 0.90495 0.78918 1.90706 1.54420 1.52822 1.41174 1.22113 0.91562 0.93226 0.95659 1.85943 1.45686 1.29030 1.61185 1.18630 1.00181 0.82348 1.04276 1.19850 0.96431 0.97575 0.99521 1.20979 1.01277 0.90226 1.02704 1.17601 0.89790 0.93341 0.90599 1.19424 1.30879 0.97900 1.01127 0.90551 1.25888 0.95556 0.97983 0.94828 1.69825 1.34397 1.37350 1.00789 0.86375 0.80779 0.81461 0.78121 1.18875 1.20399 1.19117 1.20547 0.99860 0.95002 1.06386 1.20365 1.01777 0.93993 1.02516 1.21963 0.91072 0.92603 0.95633 1.22654 0.95732 0.90043 1.01087 0.91430 0.91728 0.92280 0.77977 0.90368 0.89536 0.91250 0.90159 0.88663 0.91114 0.90216 0.90314 0.88259 0.85615 0.90816 0.88648 0.88927 0.90253 0.89165 0.93068 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.82 9.53 37.16 0.35 -0.47 16 2 C 0.06 0.35 3.07 -26.73 -0.08 0.27 16 3 H 0.10 0.73 6.11 -51.93 -0.32 0.41 16 4 O -0.56 -4.24 10.57 -35.23 -0.37 -4.62 16 5 C 0.02 0.13 5.26 -3.82 -0.02 0.11 16 6 N -0.53 -3.91 4.83 -234.02 -1.13 -5.04 16 7 C 0.03 0.24 5.07 -3.70 -0.02 0.22 16 8 C 0.12 1.24 6.60 -3.60 -0.02 1.22 16 9 N -0.62 -7.45 3.00 -172.19 -0.52 -7.97 16 10 C 0.52 8.50 7.78 -10.99 -0.09 8.41 16 11 O -0.52 -10.59 15.95 -14.35 -0.23 -10.82 16 12 C 0.05 0.89 3.58 36.00 0.13 1.02 16 13 O -0.30 -6.74 9.65 -38.64 -0.37 -7.11 16 14 C -0.01 -0.27 6.71 -38.79 -0.26 -0.53 16 15 C -0.11 -2.88 9.92 -39.83 -0.40 -3.27 16 16 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 17 C 0.09 2.38 5.57 -106.81 -0.59 1.79 16 18 C -0.46 -12.27 9.04 -37.83 -0.34 -12.61 16 19 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.81 10.97 55.54 0.61 -20.20 16 22 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.20 -4.81 9.74 -39.25 -0.38 -5.20 16 27 C -0.17 -3.74 8.96 -39.84 -0.36 -4.09 16 28 C 0.11 0.98 6.53 -3.36 -0.02 0.96 16 29 C 0.03 0.26 4.60 -3.46 -0.02 0.24 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.37 1.59 9.05 45.56 0.41 2.00 16 34 H 0.08 0.34 7.85 -51.93 -0.41 -0.07 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.70 5.87 -51.93 -0.30 0.40 16 37 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 38 H 0.10 1.15 7.06 -51.93 -0.37 0.78 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 41 H 0.08 1.18 7.19 -51.93 -0.37 0.81 16 42 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 43 H 0.13 3.40 6.18 -52.49 -0.32 3.08 16 44 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 45 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 46 H 0.09 1.70 6.27 -52.48 -0.33 1.37 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.74 6.02 -51.93 -0.31 0.43 16 49 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 50 H 0.09 0.51 8.11 -51.93 -0.42 0.08 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -33.08 394.48 -10.46 -43.54 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.82 Total: 6.56 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -2.55 Total: -13.98 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: -1.04 Total: -33.21 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.97 Total: -22.55 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.08 -10.46 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071871377.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.445 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds