Wall clock time and date at job start Tue Mar 31 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46643 * 2 1 4 4 O 1.42891 * 109.47499 * 120.00196 * 2 1 3 5 5 C 1.53001 * 109.46924 * 240.00604 * 2 1 3 6 6 N 1.46905 * 109.47004 * 179.97438 * 5 2 1 7 7 C 1.46904 * 110.99981 * 189.99914 * 6 5 2 8 8 C 1.53238 * 109.33973 * 187.24994 * 7 6 5 9 9 N 1.47077 * 108.52238 * 306.17069 * 8 7 6 10 10 C 1.34776 * 120.88430 * 231.18310 * 9 8 7 11 11 O 1.21287 * 119.99416 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00417 * 179.72428 * 10 9 8 13 13 O 1.42898 * 109.47263 * 180.27617 * 12 10 9 14 14 C 1.35677 * 117.00061 * 179.97438 * 13 12 10 15 15 C 1.39310 * 119.81476 * 359.73267 * 14 13 12 16 16 C 1.36443 * 120.17958 * 179.76055 * 15 14 13 17 17 C 1.40830 * 119.80998 * 0.50510 * 16 15 14 18 18 C 1.41220 * 120.17804 * 179.72122 * 17 16 15 19 19 H 1.08004 * 119.99571 * 24.57368 * 18 17 16 20 20 C 1.39886 * 120.00427 * 204.57217 * 18 17 16 21 21 N 1.30879 * 119.99591 * 17.93508 * 20 18 17 22 22 Si 1.86794 * 120.00326 * 197.93473 * 20 18 17 23 23 H 1.48497 * 109.47175 * 89.99930 * 22 20 18 24 24 H 1.48500 * 109.47115 * 210.00126 * 22 20 18 25 25 H 1.48500 * 109.46956 * 329.99845 * 22 20 18 26 26 C 1.40833 * 119.64674 * 359.74910 * 17 16 15 27 27 C 1.36437 * 119.80944 * 359.97438 * 26 17 16 28 28 C 1.47077 * 118.23998 * 51.45716 * 9 8 7 29 29 C 1.46899 * 110.99848 * 314.29917 * 6 5 2 30 30 H 1.09004 * 109.46643 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47216 * 299.99644 * 1 2 3 32 32 H 1.09000 * 109.47561 * 59.99740 * 1 2 3 33 33 H 0.96693 * 114.00169 * 60.00561 * 4 2 1 34 34 H 1.09000 * 109.47282 * 59.99485 * 5 2 1 35 35 H 1.08995 * 109.47149 * 299.98981 * 5 2 1 36 36 H 1.09005 * 109.49098 * 67.29396 * 7 6 5 37 37 H 1.08998 * 109.51426 * 307.22597 * 7 6 5 38 38 H 1.08993 * 109.63172 * 186.46004 * 8 7 6 39 39 H 1.09004 * 109.78613 * 65.97309 * 8 7 6 40 40 H 1.09003 * 109.47086 * 300.27863 * 12 10 9 41 41 H 1.09001 * 109.47074 * 60.27863 * 12 10 9 42 42 H 1.08001 * 119.91008 * 0.02562 * 15 14 13 43 43 H 1.08000 * 120.09083 * 180.24801 * 16 15 14 44 44 H 0.97006 * 120.00160 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.09434 * 179.97438 * 26 17 16 46 46 H 1.07998 * 119.90552 * 179.97438 * 27 26 17 47 47 H 1.09004 * 109.62932 * 68.24881 * 28 9 8 48 48 H 1.09001 * 109.63092 * 188.83439 * 28 9 8 49 49 H 1.09009 * 109.49119 * 292.70585 * 29 6 5 50 50 H 1.08996 * 109.49427 * 52.76014 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1666 5 6 2.0399 -0.7211 -1.2493 6 7 3.5090 -0.7206 -1.2497 7 6 4.0353 -1.1896 -2.5385 8 6 5.5563 -1.3467 -2.4386 9 7 6.1265 -0.0789 -1.9582 10 6 7.1447 0.5137 -2.6128 11 8 7.6027 0.0018 -3.6124 12 6 7.7097 1.8159 -2.1065 13 8 8.7677 2.2426 -2.9670 14 6 9.3877 3.4071 -2.6501 15 6 8.9775 4.1279 -1.5307 16 6 9.5990 5.2974 -1.2024 17 6 10.6507 5.7806 -2.0047 18 6 11.2954 6.9931 -1.6754 19 1 11.2890 7.3484 -0.6555 20 6 11.9423 7.7340 -2.6701 21 7 11.6685 7.5155 -3.9311 22 14 13.1969 9.0351 -2.1986 23 1 14.5462 8.4191 -2.1279 24 1 13.1981 10.1142 -3.2188 25 1 12.8435 9.6065 -0.8742 26 6 11.0556 5.0485 -3.1376 27 6 10.4275 3.8780 -3.4489 28 6 5.5601 0.5220 -0.7411 29 6 4.0350 0.6085 -0.9111 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7212 -1.5952 1.2327 34 1 1.6765 -0.2073 -2.1393 35 1 1.6767 -1.7488 -1.2494 36 1 3.7949 -0.4637 -3.3154 37 1 3.5858 -2.1509 -2.7873 38 1 5.9653 -1.5832 -3.4208 39 1 5.7995 -2.1461 -1.7386 40 1 6.9246 2.5719 -2.0934 41 1 8.0964 1.6761 -1.0970 42 1 8.1682 3.7578 -0.9188 43 1 9.2824 5.8529 -0.3320 44 1 12.1173 8.0289 -4.6210 45 1 11.8610 5.4125 -3.7582 46 1 10.7365 3.3155 -4.3175 47 1 5.8007 -0.1006 0.1207 48 1 5.9715 1.5215 -0.6006 49 1 3.7946 1.3093 -1.7107 50 1 3.5849 0.9514 0.0205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071871378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:20 Heat of formation + Delta-G solvation = -84.182108 kcal Electronic energy + Delta-G solvation = -30187.194596 eV Core-core repulsion = 25986.978744 eV Total energy + Delta-G solvation = -4200.215852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.48571 -39.20369 -38.43768 -37.18479 -36.24074 -34.65487 -33.33852 -31.98826 -31.36858 -30.03244 -29.18745 -28.80063 -27.47439 -25.03792 -24.64488 -24.24018 -22.21723 -21.37303 -20.88591 -20.59883 -19.06042 -17.79011 -17.27085 -17.04568 -16.51708 -16.38337 -16.08197 -15.97748 -15.49618 -15.21525 -15.15322 -14.87078 -14.48679 -14.42196 -14.02934 -13.95218 -13.33473 -13.15262 -12.97455 -12.88647 -12.72650 -12.39940 -12.23724 -12.18192 -12.10144 -11.87754 -11.68899 -11.66432 -11.53508 -11.40321 -11.14071 -11.00267 -10.89063 -10.66981 -10.39403 -10.03236 -9.84726 -9.68574 -9.32054 -9.04199 -9.02349 -8.60758 -7.65477 -7.05565 -6.72966 -4.26585 2.59713 2.60887 2.77178 2.94197 3.08865 3.12018 3.20958 3.34417 3.94831 3.99818 4.03568 4.17094 4.45976 4.55272 4.60664 4.60975 4.67016 4.74279 4.86150 4.86479 4.95175 5.06986 5.13568 5.17975 5.21054 5.31531 5.34232 5.39160 5.48878 5.54277 5.57413 5.62201 5.66399 5.74033 6.01184 6.19550 6.26073 6.51730 6.59249 6.70768 6.96195 7.08692 7.16833 7.20800 7.26587 7.44496 7.54548 7.76292 7.99901 8.13538 8.20381 8.42248 8.63554 8.89085 8.97152 10.21483 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.001853 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.279580 B =15109.804903 C =16170.516218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 H 0.101 0.899 4 O -0.550 6.550 5 C 0.022 3.978 6 N -0.528 5.528 7 C 0.041 3.959 8 C 0.120 3.880 9 N -0.619 5.619 10 C 0.520 3.480 11 O -0.518 6.518 12 C 0.054 3.946 13 O -0.304 6.304 14 C -0.012 4.012 15 C -0.167 4.167 16 C -0.198 4.198 17 C 0.089 3.911 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.797 5.797 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.133 4.133 27 C -0.115 4.115 28 C 0.112 3.888 29 C 0.033 3.967 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.375 0.625 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.280 0.720 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.039 0.961 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.392 -15.323 6.652 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.038 3.962 3 H 0.119 0.881 4 O -0.355 6.355 5 C -0.106 4.106 6 N -0.252 5.252 7 C -0.088 4.088 8 C -0.003 4.003 9 N -0.356 5.356 10 C 0.308 3.692 11 O -0.392 6.392 12 C -0.026 4.026 13 O -0.219 6.219 14 C -0.055 4.055 15 C -0.186 4.186 16 C -0.218 4.218 17 C 0.086 3.914 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.423 5.423 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.152 4.152 27 C -0.134 4.134 28 C -0.012 4.012 29 C -0.095 4.095 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.222 0.778 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.144 0.856 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.057 0.943 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.583 -15.350 6.151 25.631 hybrid contribution -0.356 0.810 -0.427 0.983 sum -19.939 -14.540 5.724 25.333 Atomic orbital electron populations 1.22487 0.96116 1.02723 1.03038 1.22035 0.92679 0.96965 0.84514 0.88089 1.86602 1.77175 1.28955 1.42799 1.22903 0.88093 1.01564 0.98027 1.61937 1.06662 1.25978 1.30654 1.22526 0.95516 1.00872 0.89850 1.21621 0.91442 0.85517 1.01683 1.48086 1.35076 1.24407 1.28001 1.20446 0.79238 0.86046 0.83497 1.90708 1.58803 1.64930 1.24742 1.22112 0.91911 0.93575 0.94974 1.85939 1.46873 1.38797 1.50264 1.18633 0.99853 0.88010 0.99040 1.20373 1.02128 0.98224 0.97902 1.20542 0.99858 0.98112 1.03259 1.17614 0.89984 0.92501 0.91280 1.19471 1.29613 1.04469 0.95684 0.90483 1.25891 0.96024 0.97911 0.94451 1.69836 1.34974 1.36714 1.00804 0.86314 0.81139 0.79853 0.79401 1.19304 1.20399 1.18707 1.20990 1.01181 0.92955 1.00116 1.19846 0.96664 0.97656 0.99187 1.21978 0.92476 0.99410 0.87307 1.22735 0.95261 0.89673 1.01870 0.92155 0.91387 0.91602 0.77836 0.93901 0.90173 0.94245 0.89547 0.88571 0.90674 0.90312 0.90132 0.88901 0.88627 0.90873 0.85576 0.88272 0.89960 0.89165 0.94315 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.76 9.53 37.16 0.35 -0.41 16 2 C 0.10 0.53 2.88 -26.73 -0.08 0.46 16 3 H 0.10 0.62 6.18 -51.93 -0.32 0.30 16 4 O -0.55 -3.70 13.02 -35.23 -0.46 -4.16 16 5 C 0.02 0.13 4.93 -3.82 -0.02 0.11 16 6 N -0.53 -4.02 4.64 -234.01 -1.09 -5.11 16 7 C 0.04 0.33 5.58 -3.70 -0.02 0.31 16 8 C 0.12 1.22 6.60 -3.60 -0.02 1.19 16 9 N -0.62 -7.37 3.00 -172.18 -0.52 -7.88 16 10 C 0.52 8.34 7.78 -10.99 -0.09 8.26 16 11 O -0.52 -10.42 15.95 -14.36 -0.23 -10.65 16 12 C 0.05 0.88 3.58 36.01 0.13 1.01 16 13 O -0.30 -6.68 9.65 -38.64 -0.37 -7.05 16 14 C -0.01 -0.29 6.71 -38.78 -0.26 -0.55 16 15 C -0.17 -3.71 8.96 -39.83 -0.36 -4.07 16 16 C -0.20 -4.79 9.74 -39.25 -0.38 -5.18 16 17 C 0.09 2.36 5.57 -106.80 -0.60 1.77 16 18 C -0.46 -12.22 9.04 -37.83 -0.34 -12.56 16 19 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 20 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 21 N -0.80 -20.71 10.96 55.54 0.61 -20.10 16 22 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 26 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 27 C -0.11 -2.86 9.92 -39.83 -0.40 -3.25 16 28 C 0.11 1.02 6.53 -3.36 -0.02 1.00 16 29 C 0.03 0.27 5.06 -3.46 -0.02 0.25 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.37 1.38 9.04 45.56 0.41 1.80 16 34 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 38 H 0.10 1.11 7.06 -51.93 -0.37 0.74 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.16 7.16 -51.93 -0.37 0.78 16 41 H 0.08 1.17 7.51 -51.93 -0.39 0.78 16 42 H 0.09 1.70 6.27 -52.49 -0.33 1.37 16 43 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 45 H 0.13 3.40 6.16 -52.49 -0.32 3.08 16 46 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.76 6.01 -51.93 -0.31 0.45 16 49 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 50 H 0.10 0.74 5.58 -51.93 -0.29 0.45 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -32.68 398.96 -10.53 -43.20 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.91 Total: 5.81 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.54 Total: -13.73 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: -1.00 Total: -33.09 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.06 Total: -21.86 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.68 -10.53 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071871378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.978 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds