Wall clock time and date at job start Tue Mar 31 2020 05:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47105 * 2 1 4 4 N 1.46505 * 109.47149 * 180.02562 * 3 2 1 5 5 C 1.36885 * 119.99696 * 269.99823 * 4 3 2 6 6 H 1.08005 * 120.00209 * 130.83417 * 5 4 3 7 7 C 1.39006 * 120.00365 * 310.83351 * 5 4 3 8 8 N 1.31398 * 119.99732 * 353.46585 * 7 5 4 9 9 Si 1.86796 * 120.00229 * 173.46506 * 7 5 4 10 10 H 1.48505 * 109.47240 * 60.00081 * 9 7 5 11 11 H 1.48499 * 109.47216 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47325 * 300.00236 * 9 7 5 13 13 C 1.34778 * 120.00114 * 90.00130 * 4 3 2 14 14 O 1.21732 * 119.99792 * 3.98398 * 13 4 3 15 15 C 1.46558 * 120.00080 * 183.98730 * 13 4 3 16 16 C 1.36773 * 126.17966 * 173.71499 * 15 13 4 17 17 N 1.30950 * 113.92098 * 180.02562 * 16 15 13 18 18 C 1.29373 * 117.46358 * 0.02562 * 17 16 15 19 19 C 1.50699 * 124.69915 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47195 * 90.02057 * 19 18 17 21 21 C 1.38247 * 119.96924 * 90.00425 * 20 19 18 22 22 C 1.38196 * 120.02313 * 180.02562 * 21 20 19 23 23 C 1.38466 * 119.97315 * 359.97092 * 22 21 20 24 24 F 1.35103 * 120.02250 * 179.97438 * 23 22 21 25 25 C 1.38458 * 119.94949 * 0.25328 * 23 22 21 26 26 C 1.38201 * 119.97319 * 359.52353 * 25 23 22 27 27 S 1.70917 * 110.60205 * 0.26074 * 18 17 16 28 28 H 1.08999 * 109.47035 * 300.00127 * 1 2 3 29 29 H 1.08997 * 109.47372 * 59.99880 * 1 2 3 30 30 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47035 * 239.99873 * 2 1 3 32 32 H 1.08997 * 109.47372 * 120.00120 * 2 1 3 33 33 H 1.08999 * 109.47278 * 60.00022 * 3 2 1 34 34 H 1.09004 * 109.47045 * 299.99870 * 3 2 1 35 35 H 0.97002 * 119.99832 * 185.00977 * 8 7 5 36 36 H 1.08000 * 123.03733 * 0.07888 * 16 15 13 37 37 H 1.09006 * 109.47192 * 330.02632 * 19 18 17 38 38 H 1.08996 * 109.47751 * 210.02508 * 19 18 17 39 39 H 1.07997 * 119.98908 * 359.97337 * 21 20 19 40 40 H 1.07998 * 120.01407 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00944 * 179.72081 * 25 23 22 42 42 H 1.07994 * 119.98432 * 180.22775 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1899 1.4424 1.1846 6 1 4.9897 0.7347 1.3461 7 6 3.8562 2.3531 2.1804 8 7 2.9733 3.2959 1.9392 9 14 4.6626 2.2364 3.8612 10 1 6.1330 2.3862 3.7163 11 1 4.1396 3.3155 4.7371 12 1 4.3570 0.9152 4.4663 13 6 4.1785 1.4427 -1.1681 14 8 3.5716 1.5161 -2.2208 15 6 5.6414 1.3545 -1.1703 16 6 6.4407 1.2236 -2.2724 17 7 7.7197 1.1668 -1.9969 18 6 8.0658 1.2384 -0.7524 19 6 9.4867 1.1890 -0.2529 20 6 10.0464 2.5869 -0.1912 21 6 9.9107 3.3348 0.9635 22 6 10.4230 4.6170 1.0211 23 6 11.0729 5.1523 -0.0781 24 9 11.5737 6.4059 -0.0231 25 6 11.2041 4.4040 -1.2357 26 6 10.6950 3.1203 -1.2893 27 16 6.6877 1.3887 0.2473 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.7938 3.9748 2.6084 36 1 6.0523 1.1727 -3.2788 37 1 10.0898 0.5859 -0.9318 38 1 9.5068 0.7453 0.7425 39 1 9.4034 2.9172 1.8206 40 1 10.3165 5.2013 1.9231 41 1 11.7069 4.8222 -2.0951 42 1 10.8005 2.5351 -2.1909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071874847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:28 Heat of formation + Delta-G solvation = -24.351687 kcal Electronic energy + Delta-G solvation = -27478.779520 eV Core-core repulsion = 23464.617581 eV Total energy + Delta-G solvation = -4014.161939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.105 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.93353 -39.47772 -38.96821 -38.17209 -35.23431 -33.35277 -33.01955 -31.55296 -31.19262 -29.53956 -27.38355 -26.06445 -24.90608 -23.57264 -23.12679 -21.64575 -21.24451 -20.04012 -18.97935 -17.85317 -17.61953 -16.86487 -16.32391 -15.82701 -15.69375 -15.59166 -14.99413 -14.74328 -14.36259 -14.09965 -14.02252 -13.92205 -13.66495 -13.53766 -13.39836 -13.10257 -12.86333 -12.45342 -12.02008 -11.93557 -11.79215 -11.71780 -11.57415 -11.45517 -11.15215 -11.09619 -11.01103 -10.66914 -10.56856 -10.41585 -9.88999 -9.56762 -9.16265 -8.88510 -8.74632 -8.61135 -8.51929 -8.11774 -7.56095 -6.69872 -4.55477 0.94997 1.18170 1.18595 2.12717 2.59883 2.94470 3.00681 3.01811 3.25280 3.52907 3.79959 4.20865 4.24100 4.53634 4.61917 4.70426 4.76143 4.77407 4.85655 5.16826 5.22371 5.48317 5.66045 5.69330 5.73335 5.78771 5.87036 5.90299 6.00358 6.05424 6.05957 6.17611 6.21005 6.40870 6.45813 6.47918 6.54783 6.69953 6.80812 6.86437 6.98129 7.00211 7.28449 7.73909 8.01877 8.37774 8.69059 9.19953 9.65527 10.29402 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.003501 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.015215 B = 7996.937128 C = 9180.834534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.120 3.880 4 N -0.431 5.431 5 C -0.343 4.343 6 H 0.095 0.905 7 C 0.064 3.936 8 N -0.840 5.840 9 Si 0.906 3.094 10 H -0.260 1.260 11 H -0.276 1.276 12 H -0.264 1.264 13 C 0.544 3.456 14 O -0.591 6.591 15 C -0.243 4.243 16 C 0.069 3.931 17 N -0.482 5.482 18 C -0.053 4.053 19 C 0.004 3.996 20 C -0.084 4.084 21 C -0.083 4.083 22 C -0.152 4.152 23 C 0.091 3.909 24 F -0.144 7.144 25 C -0.155 4.155 26 C -0.074 4.074 27 S 0.263 5.737 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.279 0.721 36 H 0.173 0.827 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.732 -1.787 2.387 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.003 4.003 4 N -0.148 5.148 5 C -0.477 4.477 6 H 0.112 0.888 7 C -0.147 4.147 8 N -0.472 5.472 9 Si 0.730 3.270 10 H -0.184 1.184 11 H -0.201 1.201 12 H -0.189 1.189 13 C 0.332 3.668 14 O -0.477 6.477 15 C -0.368 4.368 16 C -0.090 4.090 17 N -0.197 5.197 18 C -0.325 4.325 19 C -0.037 4.037 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.171 4.171 23 C 0.072 3.928 24 F -0.122 7.122 25 C -0.173 4.173 26 C -0.092 4.092 27 S 0.526 5.474 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.190 0.810 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.645 -1.538 2.719 11.094 hybrid contribution 0.013 0.386 -0.117 0.404 sum 10.658 -1.152 2.602 11.032 Atomic orbital electron populations 1.21653 0.96347 1.00592 1.01499 1.21851 0.94914 0.99149 1.01425 1.21461 0.80653 0.94692 1.03534 1.43218 1.05056 1.62604 1.03937 1.19234 1.17240 1.18712 0.92508 0.88822 1.25620 0.95248 0.93710 1.00159 1.69751 1.29664 1.11836 1.35982 0.86280 0.80442 0.79048 0.81198 1.18391 1.20103 1.18855 1.17234 0.84196 0.80537 0.84790 1.90676 1.68677 1.56632 1.31754 1.26102 0.99770 1.14585 0.96332 1.22102 0.86373 1.01042 0.99475 1.66050 1.17806 1.16348 1.19504 1.27957 1.03287 1.05467 0.95793 1.19027 0.89140 0.93386 1.02105 1.19804 0.98385 0.96456 0.93969 1.20987 0.97751 0.93212 0.98165 1.21117 1.00629 0.96892 0.98414 1.17741 0.98957 0.80320 0.95768 1.91484 1.85473 1.38304 1.96967 1.21120 1.03527 0.95369 0.97328 1.20947 0.95770 0.94295 0.98212 1.85012 0.92331 1.62248 1.07778 0.92898 0.93053 0.93510 0.92980 0.92115 0.87992 0.92289 0.90986 0.81045 0.88732 0.89101 0.84743 0.84704 0.84872 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 37.16 0.37 -1.90 16 2 C -0.13 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.12 2.71 5.01 -4.04 -0.02 2.69 16 4 N -0.43 -10.41 2.44 -116.33 -0.28 -10.70 16 5 C -0.34 -7.92 6.95 -15.01 -0.10 -8.02 16 6 H 0.10 2.06 5.27 -31.67 -0.17 1.90 16 7 C 0.06 1.46 5.21 -17.45 -0.09 1.37 16 8 N -0.84 -20.34 11.45 55.50 0.64 -19.70 16 9 Si 0.91 17.17 29.56 -169.99 -5.03 12.15 16 10 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 11 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 12 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 13 C 0.54 13.50 7.60 -12.91 -0.10 13.40 16 14 O -0.59 -15.83 16.44 5.16 0.08 -15.75 16 15 C -0.24 -5.34 6.35 -36.76 -0.23 -5.57 16 16 C 0.07 1.40 11.17 -18.46 -0.21 1.19 16 17 N -0.48 -9.02 10.50 -11.25 -0.12 -9.14 16 18 C -0.05 -0.89 6.61 -13.31 -0.09 -0.98 16 19 C 0.00 0.04 5.92 -29.03 -0.17 -0.13 16 20 C -0.08 -1.06 5.12 -104.61 -0.54 -1.60 16 21 C -0.08 -1.01 9.70 -39.59 -0.38 -1.39 16 22 C -0.15 -1.83 10.03 -39.51 -0.40 -2.23 16 23 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 24 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 25 C -0.15 -1.83 10.03 -39.51 -0.40 -2.23 16 26 C -0.07 -0.90 9.70 -39.59 -0.38 -1.28 16 27 S 0.26 4.90 18.52 -107.50 -1.99 2.91 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.10 2.40 5.86 -51.93 -0.30 2.10 16 34 H 0.06 1.40 7.37 -51.93 -0.38 1.02 16 35 H 0.28 6.36 8.32 -40.82 -0.34 6.02 16 36 H 0.17 3.34 8.06 -52.49 -0.42 2.92 16 37 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 38 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -27.94 374.33 -9.27 -37.21 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.06 Total: 7.79 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.20 Total: -8.56 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.23 Total: -39.54 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.08 Total: -15.75 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.15 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.99 Total: 2.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.94 -9.27 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071874847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.859 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds