Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47126 * 270.00216 * 3 2 1 5 5 H 1.48499 * 109.46882 * 29.99813 * 3 2 1 6 6 H 1.48495 * 109.47149 * 150.00044 * 3 2 1 7 7 C 1.37874 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00104 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00142 * 180.02562 * 7 2 1 10 10 S 1.81398 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.76191 * 103.00032 * 179.97438 * 10 9 7 12 12 C 1.38783 * 120.10685 * 359.97438 * 11 10 9 13 13 C 1.38200 * 119.99283 * 180.02562 * 12 11 10 14 14 C 1.38308 * 120.20284 * 359.74703 * 13 12 11 15 15 C 1.38254 * 120.20952 * 0.50817 * 14 13 12 16 16 C 1.38661 * 120.00600 * 359.49269 * 15 14 13 17 17 N 1.40065 * 120.10235 * 180.22865 * 16 15 14 18 18 C 1.34776 * 119.99711 * 24.83531 * 17 16 15 19 19 O 1.21579 * 119.99953 * 5.52562 * 18 17 16 20 20 C 1.47755 * 119.99921 * 185.53174 * 18 17 16 21 21 C 1.40106 * 120.54538 * 179.97438 * 20 18 17 22 22 C 1.38252 * 118.30216 * 180.02562 * 21 20 18 23 23 C 1.38553 * 119.29892 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 119.47711 * 180.02562 * 23 22 21 25 25 N 1.32046 * 121.04878 * 0.02562 * 23 22 21 26 26 C 1.31695 * 121.85919 * 359.66331 * 25 23 22 27 27 H 0.96999 * 120.00154 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46660 * 59.99774 * 9 7 2 29 29 H 1.08998 * 109.46676 * 299.99707 * 9 7 2 30 30 H 1.07995 * 120.00485 * 0.02562 * 12 11 10 31 31 H 1.08001 * 119.90162 * 179.97438 * 13 12 11 32 32 H 1.08000 * 119.89616 * 180.25484 * 14 13 12 33 33 H 1.07998 * 119.99214 * 179.76468 * 15 14 13 34 34 H 0.97002 * 120.00459 * 204.82572 * 17 16 15 35 35 H 1.07995 * 120.84359 * 0.02562 * 21 20 18 36 36 H 1.07996 * 120.34554 * 179.97438 * 22 21 20 37 37 H 1.07994 * 119.70801 * 180.33227 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 16 4.1163 -2.9043 -0.0016 11 6 5.8670 -2.7056 -0.0015 12 6 6.4234 -1.4342 -0.0008 13 6 7.7969 -1.2811 -0.0013 14 6 8.6207 -2.3920 0.0029 15 6 8.0755 -3.6625 -0.0030 16 6 6.6986 -3.8262 -0.0026 17 7 6.1440 -5.1124 -0.0038 18 6 6.8502 -6.1511 0.4849 19 8 7.9257 -5.9579 1.0179 20 6 6.3173 -7.5246 0.3730 21 6 7.0420 -8.6128 0.8766 22 6 6.5000 -9.8780 0.7464 23 6 5.2695 -10.0281 0.1275 24 17 4.5843 -11.6145 -0.0379 25 7 4.6097 -8.9836 -0.3386 26 6 5.0823 -7.7589 -0.2326 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 5.7831 -0.5645 0.0000 31 1 8.2283 -0.2910 -0.0011 32 1 9.6934 -2.2667 0.0067 33 1 8.7221 -4.5275 -0.0036 34 1 5.2517 -5.2556 -0.3563 35 1 7.9995 -8.4670 1.3543 36 1 7.0306 -10.7402 1.1224 37 1 4.5108 -6.9292 -0.6215 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071888164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = 25.895045 kcal Electronic energy + Delta-G solvation = -23814.465617 eV Core-core repulsion = 20094.985821 eV Total energy + Delta-G solvation = -3719.479797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.044 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28057 -40.03151 -38.26563 -37.09373 -35.06536 -33.23170 -33.17409 -32.03475 -31.01448 -29.51894 -29.27671 -25.22570 -24.29208 -23.28093 -22.90927 -22.07327 -20.71303 -18.81271 -17.93058 -17.57617 -17.20471 -16.80358 -16.46586 -15.70030 -15.52576 -15.09539 -14.84166 -14.64459 -14.27080 -14.13072 -13.76110 -13.64366 -13.42131 -13.31789 -13.01921 -12.65167 -12.59621 -12.15443 -11.99193 -11.79010 -11.45274 -10.95287 -10.74714 -10.60214 -10.54544 -10.36061 -10.30709 -9.91114 -9.83819 -9.56116 -9.40767 -9.35567 -8.83589 -8.23035 -6.82528 -6.32016 -4.36805 -0.06544 0.59708 1.27737 1.32929 1.48316 2.10336 2.41956 2.74298 3.11682 3.18328 3.19745 3.24082 3.31254 3.81451 3.90571 4.13502 4.18528 4.26182 4.36404 4.44084 4.96673 4.98993 5.03071 5.12674 5.26664 5.35030 5.44168 5.56179 5.60051 5.79018 5.96035 6.22014 6.32476 6.35506 6.45979 6.47760 6.64967 7.05902 7.08396 7.16873 7.23301 7.76825 8.12688 8.67443 9.22270 10.79530 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.002712 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.706609 B =10320.922021 C =12592.658519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.086 0.914 9 C 0.035 3.965 10 S -0.132 6.132 11 C -0.101 4.101 12 C -0.118 4.118 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.113 4.113 16 C 0.150 3.850 17 N -0.652 5.652 18 C 0.566 3.434 19 O -0.514 6.514 20 C -0.185 4.185 21 C 0.000 4.000 22 C -0.162 4.162 23 C 0.196 3.804 24 Cl -0.021 7.021 25 N -0.476 5.476 26 C 0.161 3.839 27 H 0.270 0.730 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.414 0.586 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.627 -16.410 -0.146 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.121 4.121 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.104 0.896 9 C -0.113 4.113 10 S 0.115 5.885 11 C -0.216 4.216 12 C -0.143 4.143 13 C -0.135 4.135 14 C -0.142 4.142 15 C -0.134 4.134 16 C 0.049 3.951 17 N -0.296 5.296 18 C 0.354 3.646 19 O -0.390 6.390 20 C -0.190 4.190 21 C -0.026 4.026 22 C -0.183 4.183 23 C 0.032 3.968 24 Cl 0.007 6.993 25 N -0.186 5.186 26 C 0.002 3.998 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.253 0.747 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 15.509 -17.486 -0.200 23.374 hybrid contribution 1.160 2.075 0.183 2.385 sum 16.669 -15.411 -0.017 22.701 Atomic orbital electron populations 1.69847 1.06154 1.27576 1.48619 1.24819 0.94761 0.98746 0.93816 0.86839 0.80404 0.83563 0.78999 1.19660 1.20580 1.18920 1.20380 0.86409 0.95551 1.53857 0.89645 1.21733 1.01419 0.88110 0.99997 1.85121 0.93205 1.19706 1.90468 1.21915 0.99189 0.94835 1.05681 1.21139 0.95736 0.95604 1.01804 1.21054 0.93074 0.98786 1.00570 1.20963 0.99581 0.91886 1.01744 1.21226 0.92694 0.98695 1.00826 1.17129 0.91954 0.82144 1.03857 1.43374 1.19956 1.05865 1.60424 1.17916 0.84735 0.83904 0.78084 1.90759 1.21358 1.84884 1.42035 1.20996 0.98012 0.94674 1.05310 1.21740 0.99222 0.89929 0.91740 1.21869 0.95345 0.99197 1.01857 1.22004 0.90909 0.88817 0.95041 1.98435 1.85487 1.19316 1.96015 1.67086 1.34704 0.98574 1.18255 1.23021 0.91443 0.93473 0.91842 0.91970 0.93733 0.94212 0.85184 0.85993 0.85885 0.83759 0.74747 0.82157 0.82703 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 19.97 27.47 -169.99 -4.67 15.31 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 7 C -0.52 -14.05 9.68 -34.44 -0.33 -14.39 16 8 H 0.09 2.50 7.96 -52.49 -0.42 2.09 16 9 C 0.04 0.79 3.16 36.01 0.11 0.90 16 10 S -0.13 -2.53 20.55 -107.50 -2.21 -4.74 16 11 C -0.10 -1.72 6.12 -38.89 -0.24 -1.96 16 12 C -0.12 -1.92 9.36 -39.39 -0.37 -2.29 16 13 C -0.11 -1.56 10.04 -39.57 -0.40 -1.96 16 14 C -0.12 -1.55 10.04 -39.55 -0.40 -1.95 16 15 C -0.11 -1.62 8.72 -39.42 -0.34 -1.96 16 16 C 0.15 2.30 6.44 -83.45 -0.54 1.77 16 17 N -0.65 -8.64 5.12 -10.59 -0.05 -8.69 16 18 C 0.57 7.08 7.58 -12.37 -0.09 6.99 16 19 O -0.51 -7.44 13.59 5.30 0.07 -7.37 16 20 C -0.18 -1.87 5.89 -104.83 -0.62 -2.49 16 21 C 0.00 0.00 9.71 -38.88 -0.38 -0.38 16 22 C -0.16 -1.19 9.86 -39.46 -0.39 -1.58 16 23 C 0.20 1.86 7.27 -17.34 -0.13 1.73 16 24 Cl -0.02 -0.18 29.10 -51.86 -1.51 -1.69 16 25 N -0.48 -5.26 10.32 -10.00 -0.10 -5.37 16 26 C 0.16 1.62 10.71 -17.13 -0.18 1.44 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.04 1.00 6.81 -51.93 -0.35 0.64 16 29 H 0.04 0.87 7.17 -51.92 -0.37 0.49 16 30 H 0.13 2.18 5.88 -52.49 -0.31 1.87 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.14 2.01 5.78 -52.49 -0.30 1.71 16 34 H 0.41 4.98 5.73 -40.82 -0.23 4.75 16 35 H 0.16 1.11 7.73 -52.49 -0.41 0.70 16 36 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.17 1.47 6.43 -52.49 -0.34 1.13 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -30.79 346.90 -10.03 -40.82 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.17 Total: 5.37 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -4.39 Total: -13.92 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.62 Total: -39.00 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.07 Total: -7.37 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.21 Total: -4.74 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.79 -10.03 -40.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071888164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.716 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds