Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37972 * 120.07809 * 2 1 4 4 C 1.38337 * 120.15271 * 179.97438 * 3 2 1 5 5 N 1.48012 * 119.86128 * 179.97438 * 4 3 2 6 6 O 1.21806 * 119.99630 * 0.02562 * 5 4 3 7 7 O 1.21793 * 120.00317 * 179.97438 * 5 4 3 8 8 C 1.38379 * 120.28607 * 359.95721 * 4 3 2 9 9 C 1.37938 * 120.14738 * 0.04130 * 8 4 3 10 10 C 1.39567 * 120.07249 * 179.97438 * 2 1 3 11 11 C 1.47840 * 120.13994 * 359.74668 * 10 2 1 12 12 O 1.21551 * 120.00309 * 303.99537 * 11 10 2 13 13 N 1.34778 * 119.99867 * 124.00486 * 11 10 2 14 14 C 1.46502 * 119.99894 * 5.28061 * 13 11 10 15 15 C 1.50695 * 109.47168 * 90.00700 * 14 13 11 16 16 H 1.07999 * 119.99936 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00327 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99752 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00508 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47203 * 89.99589 * 19 17 15 21 21 H 1.48497 * 109.47424 * 210.00051 * 19 17 15 22 22 H 1.48502 * 109.46926 * 330.00262 * 19 17 15 23 23 C 1.46498 * 120.00366 * 185.28667 * 13 11 10 24 24 C 1.53178 * 109.54434 * 57.81367 * 23 13 11 25 25 C 1.53091 * 109.16544 * 183.15484 * 24 23 13 26 26 O 1.42910 * 109.41502 * 57.60923 * 25 24 23 27 27 C 1.42901 * 114.09496 * 298.84337 * 26 25 24 28 28 C 1.53099 * 109.41492 * 61.15757 * 27 26 25 29 29 H 1.09005 * 109.47038 * 264.65321 * 1 2 3 30 30 H 1.08996 * 109.46926 * 24.65380 * 1 2 3 31 31 H 1.08999 * 109.46844 * 144.65615 * 1 2 3 32 32 H 1.08006 * 119.92528 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.92593 * 180.02562 * 8 4 3 34 34 H 1.08006 * 120.06992 * 179.97438 * 9 8 4 35 35 H 1.08999 * 109.46903 * 210.00442 * 14 13 11 36 36 H 1.09001 * 109.47414 * 330.00161 * 14 13 11 37 37 H 0.96998 * 119.99898 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.54630 * 178.08228 * 23 13 11 39 39 H 1.09006 * 109.52431 * 303.06226 * 24 23 13 40 40 H 1.09002 * 109.52275 * 63.24897 * 24 23 13 41 41 H 1.08999 * 109.48121 * 297.62513 * 25 24 23 42 42 H 1.08999 * 109.48336 * 177.58754 * 25 24 23 43 43 H 1.08998 * 109.48239 * 301.17299 * 27 26 25 44 44 H 1.09004 * 109.48794 * 181.14574 * 27 26 25 45 45 H 1.09003 * 109.51845 * 182.48520 * 28 27 26 46 46 H 1.09001 * 109.51918 * 62.29637 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1957 0.0005 5 7 4.3171 2.4803 0.0000 6 8 3.7041 3.5329 -0.0005 7 8 5.5351 2.4849 0.0009 8 6 4.2813 0.0017 0.0020 9 6 3.6022 -1.1989 0.0020 10 6 2.2064 -1.2078 0.0005 11 6 1.4719 -2.4909 0.0068 12 8 0.6625 -2.7236 0.8832 13 7 1.7000 -3.4026 -0.9593 14 6 2.7563 -3.1733 -1.9482 15 6 4.0516 -3.7553 -1.4437 16 1 4.0847 -4.2465 -0.4825 17 6 5.1946 -3.6599 -2.2089 18 7 5.1543 -3.0613 -3.3793 19 14 6.8003 -4.3807 -1.5833 20 1 6.9170 -5.7919 -2.0308 21 1 7.9391 -3.5947 -2.1222 22 1 6.8213 -4.3288 -0.0993 23 6 0.8916 -4.6227 -1.0207 24 6 -0.5887 -4.2507 -1.1497 25 6 -1.4314 -5.5287 -1.1338 26 8 -1.1740 -6.2525 0.0713 27 6 0.1848 -6.6678 0.2235 28 6 1.0924 -5.4354 0.2621 29 1 -0.3633 -0.0958 1.0232 30 1 -0.3633 0.9340 -0.4287 31 1 -0.3633 -0.8383 -0.5945 32 1 1.6585 2.1293 -0.0004 33 1 5.3613 0.0099 0.0028 34 1 4.1494 -2.1301 0.0027 35 1 2.4842 -3.6531 -2.8883 36 1 2.8775 -2.1020 -2.1088 37 1 5.9584 -2.9945 -3.9177 38 1 1.1955 -5.2187 -1.8813 39 1 -0.8783 -3.6130 -0.3144 40 1 -0.7504 -3.7195 -2.0878 41 1 -1.1698 -6.1474 -1.9923 42 1 -2.4886 -5.2678 -1.1823 43 1 0.4676 -7.3013 -0.6172 44 1 0.2921 -7.2275 1.1527 45 1 2.1331 -5.7517 0.3337 46 1 0.8368 -4.8218 1.1259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071889102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = -63.385555 kcal Electronic energy + Delta-G solvation = -32101.812259 eV Core-core repulsion = 27766.665119 eV Total energy + Delta-G solvation = -4335.147141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99791 -40.55770 -39.19432 -37.88807 -36.39175 -35.50237 -33.40055 -33.03524 -32.24472 -31.04274 -30.93550 -27.56987 -27.22182 -26.83363 -24.49236 -23.44982 -23.33149 -22.64197 -21.73272 -20.51581 -19.20784 -18.69819 -18.41032 -17.35335 -17.00147 -16.76456 -16.36376 -15.93499 -15.59477 -15.16041 -14.95886 -14.53017 -14.46739 -14.12403 -14.01011 -13.77087 -13.40590 -13.35488 -13.02168 -12.65374 -12.52007 -12.28698 -12.16259 -12.11229 -11.80102 -11.45516 -11.38559 -11.29934 -11.19190 -11.02353 -11.01282 -10.97806 -10.95295 -10.74152 -10.48869 -10.16044 -9.95815 -9.58214 -9.26515 -9.07385 -8.93468 -8.79335 -8.04711 -6.44539 -4.54165 -0.04855 1.18043 1.46512 1.59380 2.90193 3.06120 3.16078 3.16758 3.37137 3.63551 4.00217 4.10157 4.50041 4.65118 4.68062 4.87712 4.93564 4.98255 5.06474 5.13337 5.17006 5.31729 5.36099 5.39416 5.52510 5.57140 5.63318 5.63932 5.76754 5.77377 5.82598 5.96106 6.02444 6.11178 6.14069 6.20701 6.32758 6.42494 6.43525 6.52314 6.58764 6.74259 6.90307 7.24923 7.30146 7.47681 7.74772 7.83318 7.95295 8.45982 8.61239 9.13461 10.61166 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.004638 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.682591 B = 6035.902591 C = 8498.935211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.074 4.074 4 C -0.032 4.032 5 N 0.032 4.968 6 O -0.172 6.172 7 O -0.163 6.163 8 C -0.066 4.066 9 C -0.059 4.059 10 C -0.066 4.066 11 C 0.559 3.441 12 O -0.545 6.545 13 N -0.580 5.580 14 C 0.231 3.769 15 C -0.550 4.550 16 H 0.066 0.934 17 C 0.072 3.928 18 N -0.878 5.878 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.270 1.270 23 C 0.159 3.841 24 C -0.175 4.175 25 C 0.069 3.931 26 O -0.384 6.384 27 C 0.067 3.933 28 C -0.172 4.172 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.269 0.731 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 -0.063 3.377 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.051 4.051 3 C -0.093 4.093 4 C -0.115 4.115 5 N 0.550 4.450 6 O -0.386 6.386 7 O -0.379 6.379 8 C -0.085 4.085 9 C -0.078 4.078 10 C -0.069 4.069 11 C 0.346 3.654 12 O -0.425 6.425 13 N -0.309 5.309 14 C 0.112 3.888 15 C -0.588 4.588 16 H 0.084 0.916 17 C -0.134 4.134 18 N -0.514 5.514 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.194 1.194 23 C 0.055 3.945 24 C -0.214 4.214 25 C -0.009 4.009 26 O -0.303 6.303 27 C -0.010 4.010 28 C -0.211 4.211 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.187 -0.787 3.743 9.952 hybrid contribution 1.739 0.091 -0.303 1.768 sum -7.448 -0.697 3.440 8.233 Atomic orbital electron populations 1.20804 0.89167 1.02966 1.03679 1.19806 0.97025 0.90319 0.97907 1.20655 0.90837 0.99640 0.98194 1.21251 0.92500 0.83267 1.14523 1.43685 1.01216 1.02956 0.97109 1.94492 1.69748 1.20471 1.53854 1.94530 0.95677 1.94291 1.53407 1.21042 1.02107 0.89493 0.95856 1.22299 0.93021 0.99834 0.92605 1.20358 0.94475 0.93974 0.98090 1.18026 0.81929 0.83402 0.82071 1.90698 1.36190 1.78995 1.36664 1.48280 1.34811 1.18105 1.29706 1.19622 0.84145 0.98128 0.86913 1.21410 0.93209 1.39018 1.05141 0.91616 1.24955 0.99208 0.94599 0.94632 1.69906 1.29801 1.40936 1.10805 0.86586 0.82689 0.79490 0.79448 1.20243 1.20686 1.19437 1.20896 0.89549 0.85688 0.98351 1.22664 0.95569 0.99382 1.03753 1.22478 0.99622 0.91723 0.87034 1.87896 1.27278 1.73813 1.41331 1.22540 0.81600 0.95418 1.01480 1.22642 1.00611 0.97565 1.00260 0.89776 0.91138 0.90890 0.83123 0.82904 0.79985 0.94324 0.94235 0.92066 0.89389 0.88862 0.91238 0.93422 0.89109 0.93402 0.89086 0.90469 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.04 36.01 0.33 -1.04 16 2 C -0.05 -0.73 5.91 -104.22 -0.62 -1.35 16 3 C -0.07 -1.07 9.17 -39.64 -0.36 -1.44 16 4 C -0.03 -0.53 6.86 -79.86 -0.55 -1.07 16 5 N 0.03 0.55 4.45 34.00 0.15 0.70 16 6 O -0.17 -2.89 18.43 -29.46 -0.54 -3.44 16 7 O -0.16 -2.90 18.43 -29.46 -0.54 -3.44 16 8 C -0.07 -1.09 9.54 -39.64 -0.38 -1.47 16 9 C -0.06 -1.04 7.80 -39.19 -0.31 -1.34 16 10 C -0.07 -1.13 4.64 -104.97 -0.49 -1.61 16 11 C 0.56 10.07 5.47 -12.33 -0.07 10.00 16 12 O -0.55 -10.33 12.48 5.32 0.07 -10.26 16 13 N -0.58 -10.48 2.41 -168.37 -0.41 -10.89 16 14 C 0.23 4.80 4.69 -5.19 -0.02 4.78 16 15 C -0.55 -12.25 6.56 -34.44 -0.23 -12.47 16 16 H 0.07 1.48 7.77 -52.49 -0.41 1.07 16 17 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.88 -21.95 13.29 55.43 0.74 -21.22 16 19 Si 0.89 18.55 29.54 -169.99 -5.02 13.53 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C 0.16 2.55 2.64 -67.75 -0.18 2.37 16 24 C -0.18 -2.49 5.36 -26.59 -0.14 -2.63 16 25 C 0.07 0.85 6.84 37.20 0.25 1.11 16 26 O -0.38 -5.53 10.77 -35.23 -0.38 -5.91 16 27 C 0.07 0.88 6.84 37.21 0.25 1.14 16 28 C -0.17 -2.67 5.41 -26.59 -0.14 -2.82 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.07 0.97 7.22 -51.93 -0.38 0.60 16 32 H 0.15 1.84 7.60 -52.48 -0.40 1.45 16 33 H 0.15 2.39 7.60 -52.48 -0.40 1.99 16 34 H 0.18 3.47 5.18 -52.48 -0.27 3.19 16 35 H 0.04 0.86 7.91 -51.93 -0.41 0.45 16 36 H 0.04 0.87 6.12 -51.93 -0.32 0.56 16 37 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 38 H 0.09 1.41 7.79 -51.93 -0.40 1.01 16 39 H 0.09 1.50 6.13 -51.93 -0.32 1.18 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.09 1.65 6.06 -51.93 -0.31 1.34 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -25.83 376.08 -9.14 -34.97 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.13 Total: 6.55 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.74 Total: -6.28 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.48 Total: -31.40 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -1.40 Total: -23.04 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -25.83 -9.14 -34.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071889102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.413 kcal (2) G-P(sol) polarization free energy of solvation -25.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds