Wall clock time and date at job start Tue Mar 31 2020 05:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47045 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47285 * 119.99949 * 3 2 1 6 6 H 1.48497 * 109.47363 * 240.00291 * 3 2 1 7 7 C 1.37878 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00596 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00595 * 269.99737 * 10 9 7 12 12 O 1.21285 * 120.00894 * 185.69196 * 11 10 9 13 13 C 1.50705 * 119.99702 * 5.68779 * 11 10 9 14 14 H 1.09008 * 115.54503 * 34.28093 * 13 11 10 15 15 C 1.52998 * 117.49869 * 248.61232 * 13 11 10 16 16 C 1.52996 * 117.50177 * 179.97438 * 13 11 10 17 17 H 1.08993 * 117.49960 * 214.97793 * 16 13 11 18 18 N 1.46501 * 117.49766 * 0.02562 * 16 13 11 19 19 O 1.21797 * 120.00193 * 59.99707 * 18 16 13 20 20 O 1.21796 * 119.99930 * 239.99847 * 18 16 13 21 21 C 1.40107 * 119.99891 * 90.00079 * 10 9 7 22 22 C 1.38847 * 120.01805 * 237.15804 * 21 10 9 23 23 C 1.38123 * 120.03551 * 180.02562 * 22 21 10 24 24 C 1.38714 * 120.16724 * 359.96942 * 23 22 21 25 25 C 1.38995 * 119.92606 * 359.94910 * 24 23 22 26 26 C 1.38645 * 119.89033 * 359.85952 * 25 24 23 27 27 O 1.36123 * 120.77995 * 180.20934 * 25 24 23 28 28 C 1.43175 * 116.70824 * 342.70812 * 27 25 24 29 29 C 1.53470 * 108.23152 * 46.27989 * 28 27 25 30 30 O 1.36199 * 119.32172 * 179.80744 * 24 23 22 31 31 H 0.96998 * 119.99935 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.46674 * 299.99823 * 9 7 2 33 33 H 1.08995 * 109.46875 * 59.99649 * 9 7 2 34 34 H 1.08996 * 117.50356 * 359.97438 * 15 13 11 35 35 H 1.09003 * 117.49751 * 145.00270 * 15 13 11 36 36 H 1.07997 * 119.98038 * 0.04577 * 22 21 10 37 37 H 1.08004 * 119.91590 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.99332 * 180.17742 * 26 25 24 39 39 H 1.08998 * 109.71176 * 286.59409 * 28 27 25 40 40 H 1.09000 * 109.70507 * 165.96030 * 28 27 25 41 41 H 1.09005 * 109.70921 * 180.54347 * 29 28 27 42 42 H 1.08999 * 109.74568 * 59.93787 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 2.6410 -4.1239 -1.1702 12 8 3.3471 -5.1100 -1.1738 13 6 2.2533 -3.4703 -2.4716 14 1 2.1565 -2.3849 -2.4420 15 6 1.3045 -4.2393 -3.3932 16 6 2.7827 -4.0977 -3.7627 17 1 3.0343 -3.4253 -4.5827 18 7 3.6274 -5.2883 -3.6392 19 8 3.1893 -6.2936 -3.1092 20 8 4.7678 -5.2729 -4.0666 21 6 2.6583 -4.1462 1.2102 22 6 4.0186 -4.1832 1.4858 23 6 4.4678 -4.7095 2.6811 24 6 3.5628 -5.2020 3.6099 25 6 2.2003 -5.1647 3.3375 26 6 1.7495 -4.6327 2.1392 27 8 1.2966 -5.6392 4.2382 28 6 1.8023 -6.4998 5.2647 29 6 3.0738 -5.8630 5.8418 30 8 4.0249 -5.7208 4.7813 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5575 0.8880 33 1 0.6247 -2.5563 -0.8919 34 1 0.9611 -5.2181 -3.0586 35 1 0.5837 -3.6598 -3.9701 36 1 4.7258 -3.7998 0.7652 37 1 5.5264 -4.7377 2.8933 38 1 0.6910 -4.6003 1.9271 39 1 2.0393 -7.4762 4.8421 40 1 1.0566 -6.6104 6.0519 41 1 3.4852 -6.5048 6.6210 42 1 2.8386 -4.8836 6.2586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:55 Heat of formation + Delta-G solvation = -42.442489 kcal Electronic energy + Delta-G solvation = -31260.699140 eV Core-core repulsion = 26790.627064 eV Total energy + Delta-G solvation = -4470.072076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87437 -41.09975 -39.90027 -37.75563 -37.10413 -36.26877 -35.74442 -35.06732 -32.79106 -30.91470 -30.17482 -28.41270 -27.51289 -27.01609 -25.13705 -24.02416 -23.43023 -22.16861 -21.89481 -20.96161 -19.46497 -18.69547 -18.31632 -17.84012 -17.21088 -17.09862 -16.78292 -16.63968 -16.11122 -15.59896 -15.25434 -15.18930 -14.84653 -14.57267 -14.32335 -14.28786 -13.64613 -13.56643 -13.45842 -13.09222 -12.59144 -12.47747 -12.23130 -11.85957 -11.73049 -11.28598 -11.23495 -11.14386 -11.05821 -10.98596 -10.86562 -10.84152 -10.66989 -10.49461 -10.44742 -10.28817 -10.05305 -9.50489 -8.75713 -8.68811 -8.22097 -7.44868 -6.36846 -4.46397 0.97005 1.50985 1.59972 2.00632 2.63948 3.01530 3.12857 3.18258 3.19165 3.22752 3.40151 3.49726 3.97464 4.04071 4.18897 4.23982 4.39453 4.49190 4.75862 4.80125 4.83806 4.96604 4.99821 5.17050 5.35175 5.38583 5.41434 5.49055 5.52922 5.64725 5.81446 5.99255 6.09318 6.35341 6.48900 6.65898 6.82154 6.83137 6.94697 7.01389 7.29593 7.55729 7.59254 7.80011 7.89016 8.13764 8.48181 8.65046 9.22511 10.69400 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.007438 B = 0.004699 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3763.535205 B = 5957.246316 C = 8568.253980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.235 3.765 10 N -0.543 5.543 11 C 0.537 3.463 12 O -0.529 6.529 13 C -0.129 4.129 14 H 0.173 0.827 15 C -0.115 4.115 16 C -0.073 4.073 17 H 0.175 0.825 18 N 0.022 4.978 19 O -0.114 6.114 20 O -0.197 6.197 21 C 0.183 3.817 22 C -0.103 4.103 23 C -0.099 4.099 24 C 0.033 3.967 25 C 0.062 3.938 26 C -0.119 4.119 27 O -0.307 6.307 28 C 0.022 3.978 29 C 0.021 3.979 30 O -0.310 6.310 31 H 0.268 0.732 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -8.016 3.545 8.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.117 3.883 10 N -0.269 5.269 11 C 0.324 3.676 12 O -0.406 6.406 13 C -0.151 4.151 14 H 0.190 0.810 15 C -0.153 4.153 16 C -0.173 4.173 17 H 0.193 0.807 18 N 0.546 4.454 19 O -0.345 6.345 20 O -0.404 6.404 21 C 0.091 3.909 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.012 4.012 25 C 0.017 3.983 26 C -0.139 4.139 27 O -0.222 6.222 28 C -0.054 4.054 29 C -0.055 4.055 30 O -0.225 6.225 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.328 -7.717 3.443 8.457 hybrid contribution 0.469 1.060 0.276 1.192 sum 0.798 -6.657 3.720 7.667 Atomic orbital electron populations 1.69900 1.06004 1.27789 1.48743 1.24917 0.94867 0.99323 0.94333 0.86548 0.79600 0.82316 0.79058 1.20977 1.19937 1.19962 1.21392 0.93691 0.90127 1.53307 0.91881 1.19689 0.87202 0.81943 0.99496 1.45726 1.45088 1.34133 1.01924 1.19319 0.80650 0.83268 0.84376 1.90860 1.37783 1.24710 1.87217 1.22965 1.01120 1.03742 0.87253 0.80961 1.23581 0.88423 1.03951 0.99311 1.24962 0.96106 0.91587 1.04658 0.80748 1.43371 1.01366 1.02732 0.97944 1.94521 1.77173 1.22634 1.40214 1.94496 1.03801 1.90348 1.51781 1.17098 0.91568 0.95626 0.86608 1.20878 0.94816 1.00215 0.96341 1.20168 0.99088 0.99739 0.92852 1.18753 0.91381 1.02882 0.88151 1.18477 0.87154 1.01507 0.91195 1.20243 1.00748 1.01620 0.91294 1.86307 1.33855 1.62967 1.39024 1.23581 0.97502 0.93278 0.91057 1.23564 0.90145 1.02407 0.89370 1.86291 1.36568 1.79689 1.19922 0.92182 0.93658 0.93741 0.85337 0.84576 0.85296 0.84787 0.84509 0.90663 0.86385 0.86477 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.76 13.29 55.43 0.74 -22.02 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.55 -13.16 8.82 -34.44 -0.30 -13.47 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.23 5.14 4.71 -5.19 -0.02 5.11 16 10 N -0.54 -11.00 2.56 -114.72 -0.29 -11.30 16 11 C 0.54 10.53 7.20 -10.98 -0.08 10.45 16 12 O -0.53 -11.57 12.31 -18.72 -0.23 -11.80 16 13 C -0.13 -2.05 4.72 -91.77 -0.43 -2.48 16 14 H 0.17 2.75 7.02 -51.92 -0.36 2.39 16 15 C -0.11 -1.40 9.72 -26.72 -0.26 -1.66 16 16 C -0.07 -1.03 6.90 -67.92 -0.47 -1.50 16 17 H 0.18 1.88 8.14 -51.93 -0.42 1.45 16 18 N 0.02 0.40 3.34 -4.88 -0.02 0.38 16 19 O -0.11 -2.23 15.49 -37.14 -0.58 -2.80 16 20 O -0.20 -3.78 19.24 -29.46 -0.57 -4.35 16 21 C 0.18 3.66 5.15 -83.65 -0.43 3.23 16 22 C -0.10 -1.94 8.97 -39.40 -0.35 -2.29 16 23 C -0.10 -1.68 9.95 -39.45 -0.39 -2.07 16 24 C 0.03 0.55 6.50 -39.13 -0.25 0.30 16 25 C 0.06 1.07 6.49 -39.15 -0.25 0.82 16 26 C -0.12 -2.23 9.23 -39.24 -0.36 -2.59 16 27 O -0.31 -4.70 10.42 -32.91 -0.34 -5.04 16 28 C 0.02 0.23 7.26 37.40 0.27 0.50 16 29 C 0.02 0.22 7.26 37.40 0.27 0.49 16 30 O -0.31 -4.50 10.42 -33.16 -0.35 -4.85 16 31 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.05 1.07 7.36 -51.93 -0.38 0.69 16 33 H 0.04 0.95 6.90 -51.93 -0.36 0.59 16 34 H 0.13 1.65 7.62 -51.93 -0.40 1.25 16 35 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 37 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.14 2.49 7.83 -52.49 -0.41 2.08 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.46 364.08 -9.18 -40.64 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.84 Total: 4.78 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.17 Total: -3.55 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.43 Total: -32.93 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -2.06 Total: -28.85 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.46 -9.18 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.805 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds