Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47045 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47285 * 119.99949 * 3 2 1 6 6 H 1.48497 * 109.47363 * 240.00291 * 3 2 1 7 7 C 1.37878 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00596 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00595 * 269.99737 * 10 9 7 12 12 O 1.21285 * 120.00894 * 185.69196 * 11 10 9 13 13 C 1.50705 * 119.99702 * 5.68779 * 11 10 9 14 14 H 1.09008 * 115.54503 * 34.28093 * 13 11 10 15 15 C 1.52998 * 117.49869 * 248.61232 * 13 11 10 16 16 C 1.52996 * 117.50177 * 179.97438 * 13 11 10 17 17 H 1.08993 * 117.49960 * 214.97793 * 16 13 11 18 18 N 1.46501 * 117.49766 * 0.02562 * 16 13 11 19 19 O 1.21797 * 120.00193 * 59.99707 * 18 16 13 20 20 O 1.21796 * 119.99930 * 239.99847 * 18 16 13 21 21 C 1.40107 * 119.99891 * 90.00079 * 10 9 7 22 22 C 1.38847 * 120.01805 * 237.15804 * 21 10 9 23 23 C 1.38123 * 120.03551 * 180.02562 * 22 21 10 24 24 C 1.38714 * 120.16724 * 359.96942 * 23 22 21 25 25 C 1.38995 * 119.92606 * 359.94910 * 24 23 22 26 26 C 1.38645 * 119.89033 * 359.85952 * 25 24 23 27 27 O 1.36123 * 120.77995 * 180.20934 * 25 24 23 28 28 C 1.43175 * 116.70824 * 342.70812 * 27 25 24 29 29 C 1.53470 * 108.23152 * 46.27989 * 28 27 25 30 30 O 1.36199 * 119.32172 * 179.80744 * 24 23 22 31 31 H 0.96998 * 119.99935 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.46674 * 299.99823 * 9 7 2 33 33 H 1.08995 * 109.46875 * 59.99649 * 9 7 2 34 34 H 1.08996 * 117.50356 * 359.97438 * 15 13 11 35 35 H 1.09003 * 117.49751 * 145.00270 * 15 13 11 36 36 H 1.07997 * 119.98038 * 0.04577 * 22 21 10 37 37 H 1.08004 * 119.91590 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.99332 * 180.17742 * 26 25 24 39 39 H 1.08998 * 109.71176 * 286.59409 * 28 27 25 40 40 H 1.09000 * 109.70507 * 165.96030 * 28 27 25 41 41 H 1.09005 * 109.70921 * 180.54347 * 29 28 27 42 42 H 1.08999 * 109.74568 * 59.93787 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 2.6410 -4.1239 -1.1702 12 8 3.3471 -5.1100 -1.1738 13 6 2.2533 -3.4703 -2.4716 14 1 2.1565 -2.3849 -2.4420 15 6 1.3045 -4.2393 -3.3932 16 6 2.7827 -4.0977 -3.7627 17 1 3.0343 -3.4253 -4.5827 18 7 3.6274 -5.2883 -3.6392 19 8 3.1893 -6.2936 -3.1092 20 8 4.7678 -5.2729 -4.0666 21 6 2.6583 -4.1462 1.2102 22 6 4.0186 -4.1832 1.4858 23 6 4.4678 -4.7095 2.6811 24 6 3.5628 -5.2020 3.6099 25 6 2.2003 -5.1647 3.3375 26 6 1.7495 -4.6327 2.1392 27 8 1.2966 -5.6392 4.2382 28 6 1.8023 -6.4998 5.2647 29 6 3.0738 -5.8630 5.8418 30 8 4.0249 -5.7208 4.7813 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5575 0.8880 33 1 0.6247 -2.5563 -0.8919 34 1 0.9611 -5.2181 -3.0586 35 1 0.5837 -3.6598 -3.9701 36 1 4.7258 -3.7998 0.7652 37 1 5.5264 -4.7377 2.8933 38 1 0.6910 -4.6003 1.9271 39 1 2.0393 -7.4762 4.8421 40 1 1.0566 -6.6104 6.0519 41 1 3.4852 -6.5048 6.6210 42 1 2.8386 -4.8836 6.2586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071900176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -59.462112 kcal Electronic energy + Delta-G solvation = -31261.437166 eV Core-core repulsion = 26790.627064 eV Total energy + Delta-G solvation = -4470.810102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.22341 -42.31798 -41.33484 -39.06551 -38.25543 -37.61930 -37.11945 -36.64663 -34.60476 -32.05432 -31.52117 -29.78062 -29.03241 -28.47334 -26.37824 -25.25206 -25.07256 -23.54332 -23.13302 -22.17755 -20.77734 -19.98704 -19.57618 -19.18558 -18.72010 -18.50207 -18.16449 -18.10107 -17.47717 -17.07594 -16.45931 -16.42798 -16.26444 -15.92234 -15.61691 -15.40823 -14.99886 -14.92844 -14.75385 -14.38243 -14.29579 -13.67292 -13.55777 -13.42673 -13.16611 -12.87133 -12.68803 -12.60321 -12.35987 -12.25665 -12.22283 -12.09425 -12.04168 -11.99800 -11.89088 -11.83169 -11.49479 -11.04799 -10.63939 -10.21512 -9.61820 -8.87536 -8.24552 -6.40206 -0.49639 0.10958 0.20741 0.76410 1.24623 1.40758 1.44372 1.50274 1.73909 2.04168 2.20520 2.32109 2.38349 2.59452 2.83164 3.05823 3.21021 3.27011 3.29010 3.64058 3.80039 3.96125 4.01513 4.09738 4.14947 4.27595 4.32944 4.44107 4.50784 4.57773 4.63486 4.70305 4.73028 4.94166 5.00648 5.05633 5.24663 5.38527 5.43253 5.63215 5.78391 5.84850 5.96013 6.29644 6.36392 6.63692 6.68661 7.01810 7.31887 8.80031 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.007438 B = 0.004699 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3763.535205 B = 5957.246316 C = 8568.253980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.033 3.967 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.051 0.949 9 C 0.251 3.749 10 N -0.545 5.545 11 C 0.529 3.471 12 O -0.557 6.557 13 C -0.151 4.151 14 H 0.174 0.826 15 C -0.083 4.083 16 C -0.069 4.069 17 H 0.215 0.785 18 N 0.023 4.977 19 O -0.146 6.146 20 O -0.213 6.213 21 C 0.155 3.845 22 C -0.119 4.119 23 C -0.099 4.099 24 C 0.037 3.963 25 C 0.063 3.937 26 C -0.135 4.135 27 O -0.322 6.322 28 C 0.012 3.988 29 C 0.014 3.986 30 O -0.316 6.316 31 H 0.270 0.730 32 H 0.023 0.977 33 H 0.051 0.949 34 H 0.122 0.878 35 H 0.183 0.817 36 H 0.119 0.881 37 H 0.157 0.843 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -7.822 4.051 8.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.132 3.868 10 N -0.270 5.270 11 C 0.318 3.682 12 O -0.437 6.437 13 C -0.172 4.172 14 H 0.192 0.808 15 C -0.121 4.121 16 C -0.168 4.168 17 H 0.232 0.768 18 N 0.542 4.458 19 O -0.374 6.374 20 O -0.420 6.420 21 C 0.063 3.937 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.008 4.008 25 C 0.017 3.983 26 C -0.156 4.156 27 O -0.237 6.237 28 C -0.062 4.062 29 C -0.061 4.061 30 O -0.232 6.232 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.201 0.799 36 H 0.137 0.863 37 H 0.175 0.825 38 H 0.150 0.850 39 H 0.100 0.900 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.088 -7.559 3.976 8.542 hybrid contribution 0.530 0.909 0.313 1.098 sum 0.619 -6.651 4.289 7.938 Atomic orbital electron populations 1.69973 1.06983 1.28465 1.49599 1.25503 0.95470 1.01797 0.94085 0.85721 0.78533 0.79255 0.78885 1.20533 1.20726 1.18984 1.21518 0.93215 0.91228 1.52942 0.93033 1.19359 0.87043 0.81838 0.98537 1.45690 1.44941 1.33778 1.02613 1.19946 0.79985 0.82949 0.85328 1.90837 1.39049 1.26084 1.87698 1.22885 1.04558 1.03732 0.86070 0.80835 1.23898 0.87940 1.03419 0.96821 1.25395 0.96781 0.90197 1.04397 0.76839 1.43889 1.01407 1.03524 0.97001 1.94516 1.77274 1.24301 1.41264 1.94471 1.04882 1.90697 1.51952 1.17383 0.92321 0.96976 0.87048 1.20882 0.94326 1.01460 0.97214 1.20399 1.00402 0.98887 0.92102 1.18793 0.90949 1.02041 0.89040 1.18504 0.87825 1.00850 0.91072 1.20293 1.00417 1.02654 0.92220 1.86286 1.34197 1.63608 1.39594 1.24046 0.98906 0.92532 0.90710 1.24001 0.89662 1.03640 0.88790 1.86284 1.38072 1.79034 1.19765 0.92056 0.95938 0.93076 0.85965 0.79926 0.86315 0.82507 0.84971 0.90042 0.82445 0.82157 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.70 13.29 21.45 0.28 -46.42 16 2 C 0.03 1.63 5.46 84.65 0.46 2.09 16 3 Si 0.95 39.54 29.54 68.60 2.03 41.57 16 4 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.55 -26.87 8.82 25.60 0.23 -26.64 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 9 C 0.25 11.29 4.71 85.64 0.40 11.69 16 10 N -0.54 -22.95 2.56 -635.27 -1.63 -24.58 16 11 C 0.53 21.32 7.20 87.66 0.63 21.95 16 12 O -0.56 -25.33 12.31 20.17 0.25 -25.08 16 13 C -0.15 -4.67 4.72 -11.54 -0.05 -4.73 16 14 H 0.17 5.38 7.02 -2.38 -0.02 5.36 16 15 C -0.08 -1.85 9.72 30.60 0.30 -1.55 16 16 C -0.07 -1.81 6.90 45.00 0.31 -1.50 16 17 H 0.22 3.86 8.14 -2.39 -0.02 3.84 16 18 N 0.02 0.82 3.34 -169.36 -0.57 0.25 16 19 O -0.15 -5.85 15.49 26.24 0.41 -5.44 16 20 O -0.21 -8.17 19.24 18.89 0.36 -7.81 16 21 C 0.15 6.47 5.15 38.09 0.20 6.66 16 22 C -0.12 -4.69 8.97 22.39 0.20 -4.49 16 23 C -0.10 -3.37 9.95 22.36 0.22 -3.15 16 24 C 0.04 1.23 6.50 22.57 0.15 1.37 16 25 C 0.06 2.21 6.49 22.55 0.15 2.36 16 26 C -0.14 -5.31 9.23 22.49 0.21 -5.11 16 27 O -0.32 -9.59 10.42 -82.73 -0.86 -10.46 16 28 C 0.01 0.23 7.26 72.14 0.52 0.75 16 29 C 0.01 0.24 7.26 72.14 0.52 0.76 16 30 O -0.32 -8.61 10.42 -83.60 -0.87 -9.48 16 31 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 32 H 0.02 1.11 7.36 -2.39 -0.02 1.09 16 33 H 0.05 2.21 6.90 -2.39 -0.02 2.19 16 34 H 0.12 2.96 7.62 -2.39 -0.02 2.94 16 35 H 0.18 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.13 5.11 7.83 -2.91 -0.02 5.09 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.16 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -70.88 364.08 4.92 -65.96 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.07 Total: 21.01 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.44 Total: 0.48 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.91 Total: -70.75 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.71 Total: -58.26 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -70.88 4.92 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.496 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds