Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47027 * 240.00236 * 3 2 1 5 5 H 1.48500 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47025 * 120.00745 * 3 2 1 7 7 C 1.37874 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99482 * 182.39567 * 7 2 1 9 9 C 1.50694 * 120.00397 * 2.12144 * 7 2 1 10 10 N 1.46496 * 109.47617 * 65.12494 * 9 7 2 11 11 C 1.34779 * 120.00202 * 83.53779 * 10 9 7 12 12 O 1.21293 * 120.00064 * 174.46167 * 11 10 9 13 13 C 1.50705 * 119.99672 * 354.47277 * 11 10 9 14 14 H 1.08996 * 115.55049 * 325.57765 * 13 11 10 15 15 C 1.53004 * 117.49955 * 111.25069 * 13 11 10 16 16 C 1.52998 * 117.49632 * 179.90776 * 13 11 10 17 17 H 1.09006 * 117.50170 * 359.97438 * 16 13 11 18 18 N 1.46501 * 117.49918 * 145.02035 * 16 13 11 19 19 O 1.21800 * 120.00170 * 59.99316 * 18 16 13 20 20 O 1.21806 * 119.99910 * 240.00244 * 18 16 13 21 21 C 1.40102 * 119.99990 * 263.55094 * 10 9 7 22 22 C 1.38845 * 120.01361 * 300.67273 * 21 10 9 23 23 C 1.38133 * 120.03621 * 179.78017 * 22 21 10 24 24 C 1.38712 * 120.15652 * 0.55834 * 23 22 21 25 25 C 1.38993 * 119.93706 * 359.62978 * 24 23 22 26 26 C 1.38642 * 119.88225 * 0.11717 * 25 24 23 27 27 O 1.36110 * 120.78040 * 180.26461 * 25 24 23 28 28 C 1.43168 * 116.73340 * 342.80066 * 27 25 24 29 29 C 1.53468 * 108.24632 * 46.19388 * 28 27 25 30 30 O 1.36207 * 119.31203 * 179.53844 * 24 23 22 31 31 H 0.96994 * 119.99922 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47189 * 185.12549 * 9 7 2 33 33 H 1.09005 * 109.46785 * 305.12261 * 9 7 2 34 34 H 1.09002 * 117.49317 * 214.97634 * 15 13 11 35 35 H 1.09002 * 117.49539 * 359.97438 * 15 13 11 36 36 H 1.07996 * 119.98225 * 0.04770 * 22 21 10 37 37 H 1.08000 * 119.91830 * 180.31406 * 23 22 21 38 38 H 1.07999 * 119.98851 * 179.91441 * 26 25 24 39 39 H 1.09001 * 109.70680 * 165.88487 * 28 27 25 40 40 H 1.08998 * 109.71120 * 286.45970 * 28 27 25 41 41 H 1.09000 * 109.71136 * 59.91990 * 29 28 27 42 42 H 1.08991 * 109.71109 * 180.54861 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0838 -1.1945 0.0386 9 6 1.2518 -2.4987 -0.0494 10 7 0.5450 -2.6072 -1.3280 11 6 1.1936 -3.0569 -2.4205 12 8 0.5855 -3.2422 -3.4535 13 6 2.6745 -3.3298 -2.3586 14 1 3.2488 -2.6633 -1.7153 15 6 3.1285 -4.7881 -2.4499 16 6 3.3524 -3.8409 -3.6314 17 1 2.7274 -3.9801 -4.5135 18 7 4.7241 -3.3973 -3.8920 19 8 5.6085 -3.6520 -3.0942 20 8 4.9801 -2.7735 -4.9064 21 6 -0.8051 -2.2431 -1.4153 22 6 -1.7502 -2.8866 -0.6275 23 6 -3.0808 -2.5249 -0.7099 24 6 -3.4786 -1.5268 -1.5871 25 6 -2.5353 -0.8835 -2.3798 26 6 -1.1992 -1.2433 -2.2930 27 8 -2.9059 0.1018 -3.2425 28 6 -4.2968 0.1792 -3.5728 29 6 -5.1061 0.0660 -2.2738 30 8 -4.7964 -1.1905 -1.6612 31 1 -0.4850 0.8400 0.0004 32 1 1.9535 -3.3269 0.0493 33 1 0.5315 -2.5333 0.7680 34 1 4.0019 -5.0806 -1.8670 35 1 2.3561 -5.5501 -2.5545 36 1 -1.4442 -3.6673 0.0530 37 1 -3.8136 -3.0232 -0.0926 38 1 -0.4650 -0.7456 -2.9091 39 1 -4.5075 1.1336 -4.0553 40 1 -4.5614 -0.6381 -4.2438 41 1 -4.8365 0.8798 -1.6005 42 1 -6.1715 0.1125 -2.4991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = -47.328932 kcal Electronic energy + Delta-G solvation = -31530.482629 eV Core-core repulsion = 27060.198661 eV Total energy + Delta-G solvation = -4470.283968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10296 -40.79291 -39.83371 -37.58330 -36.80873 -36.42997 -35.83005 -34.93726 -32.51961 -30.61658 -29.98941 -28.20190 -27.68461 -27.00749 -24.78053 -24.02080 -22.95907 -22.29733 -22.02044 -20.59737 -19.21024 -18.86191 -18.22213 -18.09231 -17.26723 -17.04981 -16.93168 -16.56932 -15.77633 -15.70837 -15.00544 -14.93786 -14.61312 -14.48171 -14.12988 -13.99588 -13.62823 -13.28828 -12.95863 -12.85616 -12.63158 -12.47712 -12.11162 -11.86718 -11.48294 -11.42910 -11.26555 -11.16715 -11.07082 -11.01417 -10.90223 -10.81347 -10.78211 -10.60753 -10.20666 -10.09038 -9.90422 -9.48433 -8.82266 -8.39884 -7.77804 -7.11179 -6.36703 -4.52104 0.64765 1.73007 1.92741 2.02377 2.68856 3.13143 3.21231 3.23915 3.36815 3.42773 3.48716 3.69527 4.05575 4.16880 4.30863 4.43197 4.47795 4.67858 4.95489 4.96872 5.02634 5.14789 5.23139 5.27355 5.36127 5.52121 5.58149 5.76922 5.78868 5.81207 6.02298 6.22399 6.43298 6.50633 6.51181 6.71318 6.83536 7.02392 7.17100 7.32741 7.48082 7.59155 7.78145 7.81451 7.93012 8.09778 8.55732 8.74175 9.20662 10.64310 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.004054 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.416444 B = 6904.373660 C = 7924.077656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.559 4.559 8 H 0.064 0.936 9 C 0.222 3.778 10 N -0.526 5.526 11 C 0.542 3.458 12 O -0.557 6.557 13 C -0.121 4.121 14 H 0.160 0.840 15 C -0.114 4.114 16 C -0.072 4.072 17 H 0.181 0.819 18 N 0.017 4.983 19 O -0.165 6.165 20 O -0.163 6.163 21 C 0.228 3.772 22 C -0.125 4.125 23 C -0.104 4.104 24 C 0.024 3.976 25 C 0.058 3.942 26 C -0.068 4.068 27 O -0.310 6.310 28 C 0.022 3.978 29 C 0.023 3.977 30 O -0.314 6.314 31 H 0.269 0.731 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 -5.197 -2.319 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.082 0.918 9 C 0.106 3.894 10 N -0.251 5.251 11 C 0.329 3.671 12 O -0.438 6.438 13 C -0.143 4.143 14 H 0.177 0.823 15 C -0.152 4.152 16 C -0.172 4.172 17 H 0.198 0.802 18 N 0.538 4.462 19 O -0.383 6.383 20 O -0.381 6.381 21 C 0.136 3.864 22 C -0.146 4.146 23 C -0.123 4.123 24 C -0.020 4.020 25 C 0.013 3.987 26 C -0.088 4.088 27 O -0.225 6.225 28 C -0.054 4.054 29 C -0.053 4.053 30 O -0.229 6.229 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.027 -5.373 -2.678 9.242 hybrid contribution 0.604 1.659 -0.114 1.769 sum -6.423 -3.714 -2.791 7.928 Atomic orbital electron populations 1.69934 1.05766 1.27784 1.44677 1.25033 0.94900 0.99534 0.93181 0.86669 0.79862 0.82718 0.79053 1.19970 1.20975 1.19783 1.21316 0.93444 0.90795 1.54092 0.91812 1.19644 0.92737 0.95972 0.81050 1.46621 1.07999 1.58905 1.11592 1.19087 0.86457 0.77848 0.83677 1.90685 1.68022 1.54374 1.30706 1.23000 0.96420 1.00225 0.94626 0.82269 1.23601 1.04542 0.92439 0.94594 1.25032 0.82667 1.09887 0.99614 0.80154 1.43800 1.04189 0.98423 0.99836 1.94514 1.41493 1.59626 1.42658 1.94553 1.88872 1.37858 1.16803 1.16782 0.83151 0.92046 0.94434 1.20611 0.91265 1.01103 1.01572 1.19941 0.95592 0.98399 0.98358 1.18637 0.82459 1.00973 0.99920 1.18495 0.93563 0.93245 0.93376 1.19966 0.92272 0.95881 1.00717 1.86302 1.24993 1.49845 1.61366 1.23497 0.81101 1.04030 0.96741 1.23482 1.00984 0.86218 0.94579 1.86243 1.21921 1.36884 1.77899 0.92052 0.94488 0.92687 0.84692 0.85272 0.85875 0.85608 0.86264 0.86902 0.91090 0.90932 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.16 10.11 55.43 0.56 -20.60 16 2 C 0.08 2.02 5.41 -17.82 -0.10 1.92 16 3 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.56 -12.99 8.29 -34.44 -0.29 -13.28 16 8 H 0.06 1.47 7.67 -52.49 -0.40 1.06 16 9 C 0.22 4.58 4.97 -5.20 -0.03 4.56 16 10 N -0.53 -10.90 2.49 -114.72 -0.29 -11.19 16 11 C 0.54 10.73 7.20 -10.98 -0.08 10.65 16 12 O -0.56 -12.14 15.72 5.55 0.09 -12.06 16 13 C -0.12 -1.98 4.64 -91.77 -0.43 -2.41 16 14 H 0.16 2.81 6.58 -51.93 -0.34 2.47 16 15 C -0.11 -1.38 9.72 -26.69 -0.26 -1.64 16 16 C -0.07 -1.08 6.43 -67.89 -0.44 -1.51 16 17 H 0.18 2.64 7.67 -51.93 -0.40 2.24 16 18 N 0.02 0.28 4.33 -4.86 -0.02 0.26 16 19 O -0.17 -2.75 18.28 -29.46 -0.54 -3.29 16 20 O -0.16 -2.93 19.24 -29.46 -0.57 -3.50 16 21 C 0.23 4.87 3.35 -83.66 -0.28 4.59 16 22 C -0.13 -2.39 9.34 -39.40 -0.37 -2.76 16 23 C -0.10 -1.87 9.95 -39.44 -0.39 -2.26 16 24 C 0.02 0.46 6.49 -39.13 -0.25 0.21 16 25 C 0.06 1.19 6.49 -39.15 -0.25 0.94 16 26 C -0.07 -1.52 7.73 -39.24 -0.30 -1.83 16 27 O -0.31 -5.81 10.42 -32.87 -0.34 -6.15 16 28 C 0.02 0.29 7.26 37.40 0.27 0.56 16 29 C 0.02 0.29 7.26 37.40 0.27 0.57 16 30 O -0.31 -5.20 10.42 -33.18 -0.35 -5.55 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 32 H 0.04 0.65 7.25 -51.93 -0.38 0.28 16 33 H 0.05 1.19 7.57 -51.93 -0.39 0.80 16 34 H 0.14 1.40 7.63 -51.93 -0.40 1.01 16 35 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.12 2.08 8.04 -52.49 -0.42 1.65 16 37 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 2.90 8.06 -52.49 -0.42 2.48 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -29.21 363.96 -8.73 -37.95 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.82 Total: 5.51 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.92 Total: -1.69 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.25 Total: -31.52 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.71 Total: -30.54 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.21 -8.73 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.383 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds