Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47027 * 240.00236 * 3 2 1 5 5 H 1.48500 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47025 * 120.00745 * 3 2 1 7 7 C 1.37874 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99482 * 182.39567 * 7 2 1 9 9 C 1.50694 * 120.00397 * 2.12144 * 7 2 1 10 10 N 1.46496 * 109.47617 * 65.12494 * 9 7 2 11 11 C 1.34779 * 120.00202 * 83.53779 * 10 9 7 12 12 O 1.21293 * 120.00064 * 174.46167 * 11 10 9 13 13 C 1.50705 * 119.99672 * 354.47277 * 11 10 9 14 14 H 1.08996 * 115.55049 * 325.57765 * 13 11 10 15 15 C 1.53004 * 117.49955 * 111.25069 * 13 11 10 16 16 C 1.52998 * 117.49632 * 179.90776 * 13 11 10 17 17 H 1.09006 * 117.50170 * 359.97438 * 16 13 11 18 18 N 1.46501 * 117.49918 * 145.02035 * 16 13 11 19 19 O 1.21800 * 120.00170 * 59.99316 * 18 16 13 20 20 O 1.21806 * 119.99910 * 240.00244 * 18 16 13 21 21 C 1.40102 * 119.99990 * 263.55094 * 10 9 7 22 22 C 1.38845 * 120.01361 * 300.67273 * 21 10 9 23 23 C 1.38133 * 120.03621 * 179.78017 * 22 21 10 24 24 C 1.38712 * 120.15652 * 0.55834 * 23 22 21 25 25 C 1.38993 * 119.93706 * 359.62978 * 24 23 22 26 26 C 1.38642 * 119.88225 * 0.11717 * 25 24 23 27 27 O 1.36110 * 120.78040 * 180.26461 * 25 24 23 28 28 C 1.43168 * 116.73340 * 342.80066 * 27 25 24 29 29 C 1.53468 * 108.24632 * 46.19388 * 28 27 25 30 30 O 1.36207 * 119.31203 * 179.53844 * 24 23 22 31 31 H 0.96994 * 119.99922 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47189 * 185.12549 * 9 7 2 33 33 H 1.09005 * 109.46785 * 305.12261 * 9 7 2 34 34 H 1.09002 * 117.49317 * 214.97634 * 15 13 11 35 35 H 1.09002 * 117.49539 * 359.97438 * 15 13 11 36 36 H 1.07996 * 119.98225 * 0.04770 * 22 21 10 37 37 H 1.08000 * 119.91830 * 180.31406 * 23 22 21 38 38 H 1.07999 * 119.98851 * 179.91441 * 26 25 24 39 39 H 1.09001 * 109.70680 * 165.88487 * 28 27 25 40 40 H 1.08998 * 109.71120 * 286.45970 * 28 27 25 41 41 H 1.09000 * 109.71136 * 59.91990 * 29 28 27 42 42 H 1.08991 * 109.71109 * 180.54861 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0838 -1.1945 0.0386 9 6 1.2518 -2.4987 -0.0494 10 7 0.5450 -2.6072 -1.3280 11 6 1.1936 -3.0569 -2.4205 12 8 0.5855 -3.2422 -3.4535 13 6 2.6745 -3.3298 -2.3586 14 1 3.2488 -2.6633 -1.7153 15 6 3.1285 -4.7881 -2.4499 16 6 3.3524 -3.8409 -3.6314 17 1 2.7274 -3.9801 -4.5135 18 7 4.7241 -3.3973 -3.8920 19 8 5.6085 -3.6520 -3.0942 20 8 4.9801 -2.7735 -4.9064 21 6 -0.8051 -2.2431 -1.4153 22 6 -1.7502 -2.8866 -0.6275 23 6 -3.0808 -2.5249 -0.7099 24 6 -3.4786 -1.5268 -1.5871 25 6 -2.5353 -0.8835 -2.3798 26 6 -1.1992 -1.2433 -2.2930 27 8 -2.9059 0.1018 -3.2425 28 6 -4.2968 0.1792 -3.5728 29 6 -5.1061 0.0660 -2.2738 30 8 -4.7964 -1.1905 -1.6612 31 1 -0.4850 0.8400 0.0004 32 1 1.9535 -3.3269 0.0493 33 1 0.5315 -2.5333 0.7680 34 1 4.0019 -5.0806 -1.8670 35 1 2.3561 -5.5501 -2.5545 36 1 -1.4442 -3.6673 0.0530 37 1 -3.8136 -3.0232 -0.0926 38 1 -0.4650 -0.7456 -2.9091 39 1 -4.5075 1.1336 -4.0553 40 1 -4.5614 -0.6381 -4.2438 41 1 -4.8365 0.8798 -1.6005 42 1 -6.1715 0.1125 -2.4991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071900177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = -63.401504 kcal Electronic energy + Delta-G solvation = -31531.179588 eV Core-core repulsion = 27060.198661 eV Total energy + Delta-G solvation = -4470.980927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.40829 -42.15764 -41.29598 -38.95694 -38.13529 -37.78086 -37.17513 -36.53276 -34.29076 -31.86762 -31.48501 -29.61346 -29.16167 -28.47415 -26.07523 -25.46597 -24.50785 -23.71752 -23.28881 -21.90786 -20.59440 -20.16798 -19.55026 -19.44210 -18.83965 -18.38549 -18.31072 -18.00899 -17.30651 -17.10804 -16.75500 -16.29842 -16.03417 -15.83435 -15.49825 -15.29846 -14.93444 -14.76685 -14.49628 -14.24398 -14.11922 -13.75250 -13.67561 -13.32092 -12.89522 -12.86430 -12.74311 -12.71198 -12.57207 -12.38709 -12.26160 -12.10873 -12.02508 -11.93468 -11.91758 -11.62113 -11.44091 -11.04122 -10.66281 -9.95229 -9.30522 -8.62439 -8.21403 -6.37447 -0.69787 0.39489 0.50002 0.52539 1.28540 1.34506 1.38643 1.41065 2.02379 2.13533 2.23465 2.33146 2.42788 2.77659 2.83999 3.12773 3.21896 3.39162 3.52196 3.75544 3.78408 3.96341 4.09944 4.22091 4.29777 4.35243 4.48977 4.51597 4.52751 4.59021 4.64703 4.68809 4.93223 5.00396 5.19655 5.21207 5.28278 5.53087 5.60485 5.61926 5.96257 6.00934 6.07671 6.45341 6.46245 6.54116 6.79008 7.19062 7.35305 8.75804 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.004054 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.416444 B = 6904.373660 C = 7924.077656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.045 3.955 3 Si 0.929 3.071 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.564 4.564 8 H 0.064 0.936 9 C 0.228 3.772 10 N -0.529 5.529 11 C 0.538 3.462 12 O -0.585 6.585 13 C -0.140 4.140 14 H 0.149 0.851 15 C -0.067 4.067 16 C -0.077 4.077 17 H 0.180 0.820 18 N 0.018 4.982 19 O -0.140 6.140 20 O -0.210 6.210 21 C 0.209 3.791 22 C -0.130 4.130 23 C -0.100 4.100 24 C 0.022 3.978 25 C 0.049 3.951 26 C -0.096 4.096 27 O -0.337 6.337 28 C 0.013 3.987 29 C 0.019 3.981 30 O -0.318 6.318 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.737 -6.778 -1.352 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.756 3.244 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.602 4.602 8 H 0.082 0.918 9 C 0.111 3.889 10 N -0.254 5.254 11 C 0.327 3.673 12 O -0.467 6.467 13 C -0.162 4.162 14 H 0.166 0.834 15 C -0.105 4.105 16 C -0.177 4.177 17 H 0.197 0.803 18 N 0.537 4.463 19 O -0.367 6.367 20 O -0.417 6.417 21 C 0.117 3.883 22 C -0.150 4.150 23 C -0.119 4.119 24 C -0.022 4.022 25 C 0.004 3.996 26 C -0.116 4.116 27 O -0.253 6.253 28 C -0.062 4.062 29 C -0.056 4.056 30 O -0.233 6.233 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.099 0.901 39 H 0.167 0.833 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.968 -6.903 -1.791 10.693 hybrid contribution 0.808 2.161 -0.413 2.344 sum -7.159 -4.742 -2.204 8.866 Atomic orbital electron populations 1.70040 1.06210 1.27109 1.46144 1.25519 0.95419 1.01402 0.93813 0.86070 0.78814 0.80867 0.78621 1.21290 1.21782 1.18771 1.21609 0.93671 0.91850 1.53059 0.91762 1.19573 0.92706 0.95943 0.80642 1.46461 1.08117 1.58944 1.11862 1.19565 0.87777 0.77053 0.82908 1.90660 1.69101 1.55548 1.31405 1.22768 0.93846 1.03755 0.95863 0.83361 1.23964 1.05278 0.90024 0.91219 1.25124 0.81529 1.11084 0.99968 0.80263 1.44019 1.04741 0.98017 0.99517 1.94477 1.42015 1.58219 1.42015 1.94570 1.89382 1.39850 1.17867 1.17031 0.83921 0.92399 0.94977 1.20888 0.91411 1.01385 1.01312 1.20351 0.95878 0.97737 0.97929 1.18771 0.83274 1.00763 0.99438 1.18583 0.93350 0.93652 0.94007 1.19828 0.92624 0.97320 1.01842 1.86252 1.28528 1.49380 1.61113 1.23951 0.78409 1.06376 0.97464 1.23861 1.03502 0.84501 0.93753 1.86232 1.20167 1.38730 1.78211 0.93161 0.91217 0.93803 0.81903 0.82663 0.83701 0.82432 0.90083 0.83333 0.90313 0.91265 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.06 10.11 21.45 0.22 -43.84 16 2 C 0.05 2.23 5.41 84.65 0.46 2.69 16 3 Si 0.93 41.49 29.54 68.60 2.03 43.52 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.56 -26.21 8.29 25.60 0.21 -26.00 16 8 H 0.06 2.92 7.67 -2.91 -0.02 2.90 16 9 C 0.23 9.25 4.97 85.63 0.43 9.68 16 10 N -0.53 -22.06 2.49 -635.26 -1.58 -23.64 16 11 C 0.54 21.40 7.20 87.66 0.63 22.03 16 12 O -0.58 -26.08 15.72 -3.07 -0.05 -26.12 16 13 C -0.14 -4.44 4.64 -11.54 -0.05 -4.49 16 14 H 0.15 5.09 6.58 -2.39 -0.02 5.08 16 15 C -0.07 -1.40 9.72 30.62 0.30 -1.10 16 16 C -0.08 -2.22 6.43 45.01 0.29 -1.93 16 17 H 0.18 5.20 7.67 -2.38 -0.02 5.18 16 18 N 0.02 0.59 4.33 -169.28 -0.73 -0.14 16 19 O -0.14 -4.38 18.28 18.89 0.35 -4.03 16 20 O -0.21 -7.67 19.24 18.88 0.36 -7.30 16 21 C 0.21 9.09 3.35 38.09 0.13 9.21 16 22 C -0.13 -4.88 9.34 22.39 0.21 -4.67 16 23 C -0.10 -3.48 9.95 22.36 0.22 -3.26 16 24 C 0.02 0.83 6.49 22.56 0.15 0.98 16 25 C 0.05 2.07 6.49 22.55 0.15 2.22 16 26 C -0.10 -4.49 7.73 22.49 0.17 -4.31 16 27 O -0.34 -12.89 10.42 -82.57 -0.86 -13.75 16 28 C 0.01 0.31 7.26 72.14 0.52 0.83 16 29 C 0.02 0.43 7.26 72.14 0.52 0.95 16 30 O -0.32 -9.91 10.42 -83.68 -0.87 -10.79 16 31 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 32 H 0.07 2.32 7.25 -2.39 -0.02 2.30 16 33 H 0.04 1.87 7.57 -2.38 -0.02 1.86 16 34 H 0.16 2.57 7.63 -2.39 -0.02 2.55 16 35 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.15 4.65 8.04 -2.91 -0.02 4.62 16 37 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.08 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -66.84 363.96 4.26 -62.58 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 1.07 Total: 20.68 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.33 Total: 2.84 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -2.10 Total: -67.63 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -1.07 Total: -62.00 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -66.84 4.26 -62.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.818 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds