Wall clock time and date at job start Tue Mar 31 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99989 * 2 1 4 4 H 1.48497 * 109.46838 * 269.99510 * 3 2 1 5 5 H 1.48501 * 109.46702 * 29.99713 * 3 2 1 6 6 H 1.48498 * 109.46966 * 149.99559 * 3 2 1 7 7 C 1.37878 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99675 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00169 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00571 * 89.99781 * 10 9 7 12 12 O 1.21295 * 120.00618 * 174.33742 * 11 10 9 13 13 C 1.50697 * 119.99719 * 354.33475 * 11 10 9 14 14 H 1.09001 * 115.55346 * 34.41681 * 13 11 10 15 15 C 1.53002 * 117.51988 * 248.71718 * 13 11 10 16 16 C 1.52998 * 60.00066 * 252.51860 * 15 13 11 17 17 H 1.08998 * 117.50112 * 107.48964 * 16 15 13 18 18 N 1.46503 * 117.51909 * 252.51530 * 16 15 13 19 19 O 1.21801 * 120.00148 * 188.62171 * 18 16 15 20 20 O 1.21797 * 119.99799 * 8.63174 * 18 16 15 21 21 C 1.40110 * 119.99814 * 269.99730 * 10 9 7 22 22 C 1.38844 * 120.01937 * 122.81475 * 21 10 9 23 23 C 1.38129 * 120.03912 * 179.77570 * 22 21 10 24 24 C 1.38712 * 120.15753 * 0.53922 * 23 22 21 25 25 C 1.38988 * 119.93454 * 359.65318 * 24 23 22 26 26 C 1.38652 * 119.88393 * 0.11573 * 25 24 23 27 27 O 1.36119 * 120.78269 * 180.26127 * 25 24 23 28 28 C 1.43172 * 116.73124 * 342.79996 * 27 25 24 29 29 C 1.53462 * 108.24193 * 46.18996 * 28 27 25 30 30 O 1.36208 * 119.31476 * 179.55595 * 24 23 22 31 31 H 0.96998 * 119.99988 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47367 * 59.99999 * 9 7 2 33 33 H 1.08996 * 109.46992 * 299.99800 * 9 7 2 34 34 H 1.09005 * 117.49854 * 0.02562 * 15 13 11 35 35 H 1.08995 * 117.50072 * 145.03176 * 15 13 11 36 36 H 1.08004 * 119.97842 * 0.05177 * 22 21 10 37 37 H 1.08002 * 119.91704 * 180.29735 * 23 22 21 38 38 H 1.08003 * 119.98599 * 179.97438 * 26 25 24 39 39 H 1.09000 * 109.70968 * 165.87902 * 28 27 25 40 40 H 1.08999 * 109.70426 * 286.50385 * 28 27 25 41 41 H 1.09005 * 109.71526 * 59.92252 * 29 28 27 42 42 H 1.09010 * 109.70804 * 180.54983 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4464 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 4.2249 -3.2104 -1.1661 12 8 4.7255 -4.3152 -1.1688 13 6 3.8546 -2.5479 -2.4681 14 1 3.9732 -1.4647 -2.4949 15 6 2.6955 -3.1515 -3.2638 16 6 4.1333 -3.3212 -3.7585 17 1 4.5842 -4.3092 -3.6658 18 7 4.5397 -2.5492 -4.9354 19 8 5.6168 -2.7635 -5.4623 20 8 3.8006 -1.6928 -5.3869 21 6 4.2329 -3.2359 1.2144 22 6 3.5841 -4.4321 1.4897 23 6 3.8172 -5.0862 2.6838 24 6 4.6906 -4.5452 3.6158 25 6 5.3385 -3.3459 3.3447 26 6 5.1079 -2.6922 2.1439 27 8 6.2031 -2.8022 4.2445 28 6 6.1262 -3.2912 5.5880 29 6 6.0627 -4.8237 5.5385 30 8 4.9008 -5.2001 4.7915 31 1 -0.4850 0.8400 -0.0004 32 1 3.8745 -0.6800 0.8911 33 1 3.8751 -0.6804 -0.8888 34 1 2.2002 -4.0278 -2.8454 35 1 2.0516 -2.4655 -3.8140 36 1 2.9002 -4.8538 0.7679 37 1 3.3151 -6.0190 2.8939 38 1 5.6102 -1.7599 1.9317 39 1 7.0094 -2.9776 6.1445 40 1 5.2297 -2.9015 6.0701 41 1 6.9560 -5.2131 5.0501 42 1 5.9936 -5.2216 6.5511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:01 Heat of formation + Delta-G solvation = -42.427146 kcal Electronic energy + Delta-G solvation = -30785.523518 eV Core-core repulsion = 26315.452108 eV Total energy + Delta-G solvation = -4470.071410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.17628 -41.24667 -40.21542 -37.92767 -37.22587 -36.58650 -35.97635 -35.28328 -32.73637 -31.06275 -30.36048 -28.78487 -28.00739 -27.33932 -25.20860 -24.12760 -23.23537 -22.21028 -21.99988 -21.10194 -19.37338 -19.00773 -18.45938 -18.27145 -17.45857 -17.33586 -17.19453 -17.05864 -16.36507 -16.04507 -15.45260 -15.06276 -14.90264 -14.60831 -14.41542 -14.17766 -13.89064 -13.75067 -13.29430 -13.21012 -12.76687 -12.66706 -12.42084 -12.15009 -11.92013 -11.52056 -11.35797 -11.31003 -11.23436 -11.17409 -11.11615 -10.96478 -10.86177 -10.78723 -10.52294 -10.46022 -9.83902 -9.81439 -8.88123 -8.82719 -8.35765 -7.61508 -6.36518 -4.40663 0.57230 1.34357 1.45305 1.66727 2.45972 2.90243 3.03178 3.08704 3.15136 3.19455 3.23373 3.47690 3.82296 3.94622 4.12995 4.13561 4.32961 4.50832 4.65039 4.67683 4.74345 4.76897 4.93491 5.07117 5.25203 5.29040 5.33384 5.38269 5.49940 5.58319 5.69084 5.80927 5.91932 6.19327 6.23980 6.30881 6.44028 6.52873 6.63431 6.88237 7.03602 7.20857 7.44660 7.57520 7.74784 8.13447 8.30810 8.66227 9.20386 10.75352 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.009455 B = 0.003826 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.721666 B = 7316.155086 C = 9157.307464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.084 3.916 3 Si 0.864 3.136 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.204 3.796 10 N -0.534 5.534 11 C 0.553 3.447 12 O -0.542 6.542 13 C -0.124 4.124 14 H 0.150 0.850 15 C -0.089 4.089 16 C -0.077 4.077 17 H 0.182 0.818 18 N 0.015 4.985 19 O -0.165 6.165 20 O -0.160 6.160 21 C 0.178 3.822 22 C -0.098 4.098 23 C -0.099 4.099 24 C 0.037 3.963 25 C 0.062 3.938 26 C -0.122 4.122 27 O -0.308 6.308 28 C 0.021 3.979 29 C 0.021 3.979 30 O -0.308 6.308 31 H 0.269 0.731 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 -7.213 6.211 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.121 4.121 3 Si 0.690 3.310 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.100 0.900 9 C 0.085 3.915 10 N -0.259 5.259 11 C 0.341 3.659 12 O -0.420 6.420 13 C -0.146 4.146 14 H 0.167 0.833 15 C -0.127 4.127 16 C -0.177 4.177 17 H 0.199 0.801 18 N 0.535 4.465 19 O -0.382 6.382 20 O -0.378 6.378 21 C 0.086 3.914 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.008 4.008 25 C 0.016 3.984 26 C -0.142 4.142 27 O -0.222 6.222 28 C -0.055 4.055 29 C -0.055 4.055 30 O -0.223 6.223 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.929 -8.032 6.854 13.828 hybrid contribution 0.496 1.312 0.093 1.406 sum 9.426 -6.720 6.947 13.501 Atomic orbital electron populations 1.69853 1.06141 1.27493 1.48366 1.24792 0.94725 0.98736 0.93888 0.87037 0.80573 0.84175 0.79253 1.19435 1.20513 1.18882 1.21178 0.88109 0.95332 1.53734 0.89979 1.20132 0.96900 0.76150 0.98319 1.45403 1.62132 1.16155 1.02236 1.19067 0.77894 0.84966 0.83991 1.90713 1.44018 1.20022 1.87235 1.22664 1.03142 1.01393 0.87422 0.83262 1.23544 0.87615 1.04316 0.97235 1.25139 1.06513 0.99855 0.86177 0.80074 1.43837 1.00087 1.00191 1.02354 1.94539 1.09638 1.72274 1.61756 1.94556 1.50534 1.26383 1.66369 1.17072 0.94855 0.93031 0.86453 1.20878 0.99200 0.95270 0.96386 1.20197 0.99376 1.00662 0.91586 1.18789 1.01745 0.91937 0.88321 1.18455 0.95863 0.92311 0.91721 1.20217 0.99657 1.01558 0.92761 1.86296 1.55326 1.62234 1.18361 1.23599 1.04748 0.94452 0.82685 1.23576 0.88452 0.95515 0.97920 1.86311 1.44156 1.60504 1.31353 0.92069 0.93840 0.94845 0.84974 0.84153 0.84945 0.84565 0.84605 0.86319 0.90464 0.90693 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.15 13.96 55.43 0.77 -23.38 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.86 18.83 27.47 -169.99 -4.67 14.16 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 7 C -0.55 -13.19 9.94 -34.44 -0.34 -13.53 16 8 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 9 C 0.20 4.18 3.91 -5.20 -0.02 4.16 16 10 N -0.53 -10.16 2.56 -114.73 -0.29 -10.45 16 11 C 0.55 9.96 7.24 -10.99 -0.08 9.88 16 12 O -0.54 -10.42 15.66 5.54 0.09 -10.34 16 13 C -0.12 -1.97 5.24 -91.77 -0.48 -2.45 16 14 H 0.15 2.40 6.41 -51.93 -0.33 2.06 16 15 C -0.09 -1.22 9.72 -26.73 -0.26 -1.48 16 16 C -0.08 -1.09 6.42 -67.93 -0.44 -1.53 16 17 H 0.18 2.42 7.67 -51.93 -0.40 2.02 16 18 N 0.01 0.23 4.33 -4.89 -0.02 0.21 16 19 O -0.17 -2.75 19.24 -29.46 -0.57 -3.31 16 20 O -0.16 -2.65 18.28 -29.46 -0.54 -3.19 16 21 C 0.18 3.29 5.15 -83.66 -0.43 2.86 16 22 C -0.10 -1.68 8.97 -39.40 -0.35 -2.03 16 23 C -0.10 -1.53 9.95 -39.45 -0.39 -1.92 16 24 C 0.04 0.57 6.49 -39.13 -0.25 0.31 16 25 C 0.06 0.99 6.49 -39.15 -0.25 0.74 16 26 C -0.12 -2.11 9.23 -39.24 -0.36 -2.48 16 27 O -0.31 -4.37 10.42 -32.90 -0.34 -4.71 16 28 C 0.02 0.20 7.26 37.40 0.27 0.47 16 29 C 0.02 0.19 7.26 37.40 0.27 0.47 16 30 O -0.31 -4.14 10.42 -33.19 -0.35 -4.48 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.04 0.90 6.42 -51.93 -0.33 0.57 16 33 H 0.03 0.65 5.53 -51.93 -0.29 0.36 16 34 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.14 1.85 7.63 -51.93 -0.40 1.46 16 36 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 37 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.14 2.25 7.83 -52.48 -0.41 1.84 16 39 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.12 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -30.26 366.52 -8.32 -38.58 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.71 Total: 5.88 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.22 Total: -4.50 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.46 Total: -33.62 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.71 Total: -26.03 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.67 Total: 14.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.26 -8.32 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.846 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds