Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99989 * 2 1 4 4 H 1.48497 * 109.46838 * 269.99510 * 3 2 1 5 5 H 1.48501 * 109.46702 * 29.99713 * 3 2 1 6 6 H 1.48498 * 109.46966 * 149.99559 * 3 2 1 7 7 C 1.37878 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99675 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00169 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00571 * 89.99781 * 10 9 7 12 12 O 1.21295 * 120.00618 * 174.33742 * 11 10 9 13 13 C 1.50697 * 119.99719 * 354.33475 * 11 10 9 14 14 H 1.09001 * 115.55346 * 34.41681 * 13 11 10 15 15 C 1.53002 * 117.51988 * 248.71718 * 13 11 10 16 16 C 1.52998 * 60.00066 * 252.51860 * 15 13 11 17 17 H 1.08998 * 117.50112 * 107.48964 * 16 15 13 18 18 N 1.46503 * 117.51909 * 252.51530 * 16 15 13 19 19 O 1.21801 * 120.00148 * 188.62171 * 18 16 15 20 20 O 1.21797 * 119.99799 * 8.63174 * 18 16 15 21 21 C 1.40110 * 119.99814 * 269.99730 * 10 9 7 22 22 C 1.38844 * 120.01937 * 122.81475 * 21 10 9 23 23 C 1.38129 * 120.03912 * 179.77570 * 22 21 10 24 24 C 1.38712 * 120.15753 * 0.53922 * 23 22 21 25 25 C 1.38988 * 119.93454 * 359.65318 * 24 23 22 26 26 C 1.38652 * 119.88393 * 0.11573 * 25 24 23 27 27 O 1.36119 * 120.78269 * 180.26127 * 25 24 23 28 28 C 1.43172 * 116.73124 * 342.79996 * 27 25 24 29 29 C 1.53462 * 108.24193 * 46.18996 * 28 27 25 30 30 O 1.36208 * 119.31476 * 179.55595 * 24 23 22 31 31 H 0.96998 * 119.99988 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47367 * 59.99999 * 9 7 2 33 33 H 1.08996 * 109.46992 * 299.99800 * 9 7 2 34 34 H 1.09005 * 117.49854 * 0.02562 * 15 13 11 35 35 H 1.08995 * 117.50072 * 145.03176 * 15 13 11 36 36 H 1.08004 * 119.97842 * 0.05177 * 22 21 10 37 37 H 1.08002 * 119.91704 * 180.29735 * 23 22 21 38 38 H 1.08003 * 119.98599 * 179.97438 * 26 25 24 39 39 H 1.09000 * 109.70968 * 165.87902 * 28 27 25 40 40 H 1.08999 * 109.70426 * 286.50385 * 28 27 25 41 41 H 1.09005 * 109.71526 * 59.92252 * 29 28 27 42 42 H 1.09010 * 109.70804 * 180.54983 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4464 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 4.2249 -3.2104 -1.1661 12 8 4.7255 -4.3152 -1.1688 13 6 3.8546 -2.5479 -2.4681 14 1 3.9732 -1.4647 -2.4949 15 6 2.6955 -3.1515 -3.2638 16 6 4.1333 -3.3212 -3.7585 17 1 4.5842 -4.3092 -3.6658 18 7 4.5397 -2.5492 -4.9354 19 8 5.6168 -2.7635 -5.4623 20 8 3.8006 -1.6928 -5.3869 21 6 4.2329 -3.2359 1.2144 22 6 3.5841 -4.4321 1.4897 23 6 3.8172 -5.0862 2.6838 24 6 4.6906 -4.5452 3.6158 25 6 5.3385 -3.3459 3.3447 26 6 5.1079 -2.6922 2.1439 27 8 6.2031 -2.8022 4.2445 28 6 6.1262 -3.2912 5.5880 29 6 6.0627 -4.8237 5.5385 30 8 4.9008 -5.2001 4.7915 31 1 -0.4850 0.8400 -0.0004 32 1 3.8745 -0.6800 0.8911 33 1 3.8751 -0.6804 -0.8888 34 1 2.2002 -4.0278 -2.8454 35 1 2.0516 -2.4655 -3.8140 36 1 2.9002 -4.8538 0.7679 37 1 3.3151 -6.0190 2.8939 38 1 5.6102 -1.7599 1.9317 39 1 7.0094 -2.9776 6.1445 40 1 5.2297 -2.9015 6.0701 41 1 6.9560 -5.2131 5.0501 42 1 5.9936 -5.2216 6.5511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071900178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = -59.503198 kcal Electronic energy + Delta-G solvation = -30786.263992 eV Core-core repulsion = 26315.452108 eV Total energy + Delta-G solvation = -4470.811883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.43718 -42.36419 -41.54052 -39.15633 -38.26344 -37.86656 -37.24414 -36.75164 -34.58686 -32.09872 -31.61469 -30.19175 -29.37132 -28.63691 -26.36274 -25.22739 -24.85335 -23.50764 -23.27462 -22.22340 -20.61051 -20.23828 -19.61877 -19.49362 -19.15670 -18.55268 -18.51257 -18.26839 -17.79107 -17.27831 -16.58612 -16.42662 -16.00428 -15.92881 -15.68584 -15.41534 -15.03875 -14.95038 -14.70038 -14.49318 -14.30466 -13.87174 -13.71054 -13.63622 -13.22601 -12.84916 -12.77339 -12.64681 -12.58011 -12.45535 -12.32212 -12.26534 -12.07027 -12.04416 -11.98568 -11.72631 -11.53582 -11.24584 -10.79945 -10.24368 -9.62706 -8.90382 -8.31361 -6.38639 -0.74020 0.07028 0.19975 0.43260 1.12183 1.37032 1.40297 1.45910 1.64428 1.99340 2.13938 2.31179 2.33585 2.55470 2.71925 3.01819 3.11191 3.22225 3.25870 3.53305 3.63224 3.95723 4.00711 4.04080 4.07415 4.14563 4.30847 4.37405 4.46875 4.55694 4.56762 4.58476 4.63773 4.73435 4.84670 4.99962 5.15830 5.17164 5.30066 5.40384 5.66091 5.83468 6.03801 6.29938 6.34843 6.43248 6.65925 6.86740 7.25851 8.83639 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.009455 B = 0.003826 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.721666 B = 7316.155086 C = 9157.307464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.033 3.967 3 Si 0.921 3.079 4 H -0.259 1.259 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.212 3.788 10 N -0.538 5.538 11 C 0.553 3.447 12 O -0.556 6.556 13 C -0.140 4.140 14 H 0.148 0.852 15 C -0.078 4.078 16 C -0.061 4.061 17 H 0.193 0.807 18 N 0.016 4.984 19 O -0.174 6.174 20 O -0.168 6.168 21 C 0.148 3.852 22 C -0.112 4.112 23 C -0.099 4.099 24 C 0.039 3.961 25 C 0.061 3.939 26 C -0.136 4.136 27 O -0.321 6.321 28 C 0.012 3.988 29 C 0.014 3.986 30 O -0.317 6.317 31 H 0.269 0.731 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.159 0.841 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.710 -7.343 7.498 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.168 4.168 3 Si 0.744 3.256 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.091 3.909 10 N -0.262 5.262 11 C 0.342 3.658 12 O -0.436 6.436 13 C -0.162 4.162 14 H 0.166 0.834 15 C -0.116 4.116 16 C -0.161 4.161 17 H 0.210 0.790 18 N 0.536 4.464 19 O -0.390 6.390 20 O -0.386 6.386 21 C 0.057 3.943 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.006 4.006 25 C 0.015 3.985 26 C -0.156 4.156 27 O -0.236 6.236 28 C -0.063 4.063 29 C -0.060 4.060 30 O -0.232 6.232 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.176 0.824 38 H 0.155 0.845 39 H 0.175 0.825 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.653 -8.178 8.153 15.711 hybrid contribution 0.018 1.224 -0.132 1.231 sum 10.671 -6.954 8.021 15.052 Atomic orbital electron populations 1.69992 1.07967 1.28299 1.50712 1.25536 0.95287 1.02202 0.93741 0.86114 0.79942 0.79723 0.79829 1.18367 1.21136 1.16851 1.21273 0.90009 0.93753 1.52231 0.93645 1.19938 0.94370 0.77494 0.99069 1.45346 1.62253 1.15686 1.02962 1.19338 0.77310 0.84808 0.84341 1.90692 1.44737 1.20676 1.87490 1.22617 1.05254 1.01325 0.87042 0.83401 1.23710 0.87296 1.04610 0.95946 1.25147 1.06841 0.99432 0.84648 0.78963 1.44019 0.99833 1.00030 1.02557 1.94538 1.09885 1.72380 1.62229 1.94555 1.50559 1.26744 1.66787 1.17342 0.96233 0.93934 0.86784 1.20936 0.99573 0.95447 0.97271 1.20433 0.99246 1.01224 0.90932 1.18869 1.01023 0.91707 0.88987 1.18506 0.95834 0.92387 0.91786 1.20301 0.99994 1.01921 0.93389 1.86276 1.54623 1.62674 1.20031 1.24033 1.06807 0.94785 0.80631 1.23996 0.87233 0.95411 0.99366 1.86301 1.46001 1.60386 1.30490 0.92181 0.93622 0.92964 0.83601 0.83547 0.85520 0.82356 0.84472 0.82464 0.90300 0.90050 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.16 13.96 21.45 0.30 -51.86 16 2 C 0.03 1.67 5.47 84.66 0.46 2.14 16 3 Si 0.92 38.27 27.47 68.60 1.88 40.16 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.25 -9.35 6.54 99.48 0.65 -8.70 16 7 C -0.53 -26.24 9.94 25.60 0.25 -25.99 16 8 H 0.05 2.53 8.06 -2.91 -0.02 2.50 16 9 C 0.21 8.60 3.91 85.63 0.33 8.93 16 10 N -0.54 -20.60 2.56 -635.29 -1.63 -22.23 16 11 C 0.55 19.93 7.24 87.66 0.63 20.56 16 12 O -0.56 -21.42 15.66 -3.08 -0.05 -21.47 16 13 C -0.14 -4.36 5.24 -11.54 -0.06 -4.42 16 14 H 0.15 4.63 6.41 -2.39 -0.02 4.62 16 15 C -0.08 -2.06 9.72 30.59 0.30 -1.76 16 16 C -0.06 -1.67 6.42 44.99 0.29 -1.38 16 17 H 0.19 4.88 7.67 -2.39 -0.02 4.86 16 18 N 0.02 0.50 4.33 -169.39 -0.73 -0.23 16 19 O -0.17 -5.61 19.24 18.89 0.36 -5.25 16 20 O -0.17 -5.42 18.28 18.89 0.35 -5.07 16 21 C 0.15 5.57 5.15 38.09 0.20 5.77 16 22 C -0.11 -3.95 8.97 22.39 0.20 -3.74 16 23 C -0.10 -3.02 9.95 22.36 0.22 -2.80 16 24 C 0.04 1.18 6.49 22.56 0.15 1.32 16 25 C 0.06 1.91 6.49 22.55 0.15 2.05 16 26 C -0.14 -4.73 9.23 22.49 0.21 -4.52 16 27 O -0.32 -8.57 10.42 -82.68 -0.86 -9.43 16 28 C 0.01 0.19 7.26 72.14 0.52 0.72 16 29 C 0.01 0.22 7.26 72.14 0.52 0.74 16 30 O -0.32 -7.78 10.42 -83.70 -0.87 -8.65 16 31 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.05 1.86 6.42 -2.39 -0.02 1.84 16 33 H 0.05 1.95 5.53 -2.39 -0.01 1.94 16 34 H 0.15 3.46 8.14 -2.38 -0.02 3.44 16 35 H 0.15 3.73 7.63 -2.39 -0.02 3.71 16 36 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.14 4.56 7.83 -2.91 -0.02 4.54 16 39 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.16 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -66.28 366.52 4.15 -62.12 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.02 Total: 24.30 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 4.38 Total: -2.38 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.06 Total: -74.32 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -1.07 Total: -49.88 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.88 Total: 40.16 kcal Total: -66.28 4.15 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.622 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds