Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00165 * 2 1 4 4 H 1.48496 * 109.46842 * 269.99939 * 3 2 1 5 5 H 1.48500 * 109.46824 * 29.99969 * 3 2 1 6 6 H 1.48504 * 109.47092 * 149.99881 * 3 2 1 7 7 C 1.37876 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00386 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47480 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99745 * 269.99700 * 10 9 7 12 12 O 1.21296 * 119.99819 * 185.66480 * 11 10 9 13 13 C 1.50702 * 120.00260 * 5.66913 * 11 10 9 14 14 H 1.09001 * 115.54807 * 325.72499 * 13 11 10 15 15 C 1.53003 * 117.49860 * 111.38630 * 13 11 10 16 16 C 1.53000 * 117.49916 * 180.02562 * 13 11 10 17 17 H 1.09002 * 117.49595 * 145.02041 * 16 13 11 18 18 N 1.46496 * 117.49980 * 0.02562 * 16 13 11 19 19 O 1.21806 * 120.00040 * 119.99631 * 18 16 13 20 20 O 1.21799 * 119.99951 * 299.99795 * 18 16 13 21 21 C 1.40096 * 119.99747 * 89.99787 * 10 9 7 22 22 C 1.38837 * 120.02305 * 56.88512 * 21 10 9 23 23 C 1.38129 * 120.04269 * 180.02562 * 22 21 10 24 24 C 1.38716 * 120.15615 * 0.02562 * 23 22 21 25 25 C 1.38986 * 119.93564 * 359.87104 * 24 23 22 26 26 C 1.38651 * 119.88625 * 0.19634 * 25 24 23 27 27 O 1.36118 * 120.78103 * 180.21598 * 25 24 23 28 28 C 1.43168 * 116.72014 * 342.70384 * 27 25 24 29 29 C 1.53469 * 108.27242 * 46.23452 * 28 27 25 30 30 O 1.36207 * 119.31408 * 179.67766 * 24 23 22 31 31 H 0.97003 * 120.00352 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47016 * 59.99143 * 9 7 2 33 33 H 1.09002 * 109.46261 * 300.00036 * 9 7 2 34 34 H 1.08995 * 117.49695 * 214.97827 * 15 13 11 35 35 H 1.08998 * 117.49760 * 0.02562 * 15 13 11 36 36 H 1.08007 * 119.97925 * 0.10716 * 22 21 10 37 37 H 1.07993 * 119.91993 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.98929 * 179.89274 * 26 25 24 39 39 H 1.08994 * 109.71498 * 165.94976 * 28 27 25 40 40 H 1.09001 * 109.70598 * 286.52951 * 28 27 25 41 41 H 1.08994 * 109.70954 * 59.95892 * 29 28 27 42 42 H 1.09001 * 109.70601 * 180.57978 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6408 -4.1249 -1.1667 12 8 3.3473 -5.1109 -1.1693 13 6 2.2527 -3.4727 -2.4686 14 1 1.2562 -3.0316 -2.4947 15 6 3.3561 -2.7728 -3.2646 16 6 2.7811 -4.1020 -3.7592 17 1 2.1323 -4.0750 -4.6346 18 7 3.6252 -5.2929 -3.6348 19 8 3.2811 -6.3401 -4.1530 20 8 4.6711 -5.2358 -3.0131 21 6 2.6581 -4.1451 1.2138 22 6 1.7490 -4.6310 2.1438 23 6 2.1973 -5.1555 3.3404 24 6 3.5559 -5.1981 3.6172 25 6 4.4686 -4.7144 2.6873 26 6 4.0180 -4.1867 1.4869 27 8 5.8058 -4.7517 2.9391 28 6 6.1990 -4.9393 4.3029 29 6 5.3596 -6.0806 4.8931 30 8 3.9787 -5.7128 4.8052 31 1 -0.4851 0.8400 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6240 -2.5566 0.8903 34 1 3.0854 -1.8717 -3.8148 35 1 4.3627 -2.7845 -2.8469 36 1 0.6906 -4.6001 1.9309 37 1 1.4884 -5.5333 4.0622 38 1 4.7257 -3.8088 0.7638 39 1 7.2565 -5.1992 4.3483 40 1 6.0212 -4.0231 4.8660 41 1 5.5328 -6.9953 4.3263 42 1 5.6335 -6.2367 5.9365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = -40.489130 kcal Electronic energy + Delta-G solvation = -31429.930538 eV Core-core repulsion = 26959.943166 eV Total energy + Delta-G solvation = -4469.987372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85251 -41.08041 -39.88657 -37.74468 -37.07808 -36.25649 -35.72335 -35.04878 -32.77655 -30.87571 -30.22976 -28.31225 -27.50006 -27.09043 -25.05224 -24.15816 -23.13389 -22.51153 -21.86764 -20.77082 -19.42468 -18.72996 -18.27123 -17.77294 -17.29872 -17.07943 -16.74924 -16.53865 -16.26340 -15.65389 -15.19125 -15.12569 -14.80802 -14.53902 -14.34237 -14.26277 -13.66800 -13.63530 -13.39158 -12.93767 -12.59359 -12.43572 -12.25645 -11.93004 -11.73450 -11.26457 -11.20856 -11.06462 -11.05322 -11.00059 -10.89366 -10.76334 -10.64045 -10.47769 -10.38165 -10.35179 -10.00601 -9.48348 -8.73848 -8.69727 -8.18914 -7.45150 -6.35617 -4.43842 0.99171 1.51051 1.61102 2.02742 2.68299 3.06158 3.10921 3.15098 3.20401 3.25093 3.39329 3.54814 3.99390 4.09236 4.18951 4.26088 4.44853 4.50335 4.78009 4.82092 4.86241 4.96026 5.00895 5.18718 5.32526 5.40913 5.47010 5.50717 5.51643 5.67177 5.78827 6.03373 6.07793 6.37383 6.50184 6.67350 6.76786 6.84671 6.93195 7.03321 7.31214 7.57239 7.61253 7.81106 7.88594 8.15211 8.49169 8.66463 9.24524 10.71053 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.007336 B = 0.004970 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3815.756040 B = 5632.733785 C = 8157.214178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.235 3.765 10 N -0.542 5.542 11 C 0.535 3.465 12 O -0.528 6.528 13 C -0.124 4.124 14 H 0.162 0.838 15 C -0.101 4.101 16 C -0.080 4.080 17 H 0.174 0.826 18 N 0.023 4.977 19 O -0.200 6.200 20 O -0.112 6.112 21 C 0.181 3.819 22 C -0.121 4.121 23 C -0.101 4.101 24 C 0.032 3.968 25 C 0.063 3.937 26 C -0.100 4.100 27 O -0.306 6.306 28 C 0.021 3.979 29 C 0.022 3.978 30 O -0.310 6.310 31 H 0.267 0.733 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 -5.933 2.923 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.117 3.883 10 N -0.268 5.268 11 C 0.322 3.678 12 O -0.405 6.405 13 C -0.146 4.146 14 H 0.180 0.820 15 C -0.139 4.139 16 C -0.180 4.180 17 H 0.191 0.809 18 N 0.546 4.454 19 O -0.407 6.407 20 O -0.344 6.344 21 C 0.089 3.911 22 C -0.140 4.140 23 C -0.120 4.120 24 C -0.013 4.013 25 C 0.017 3.983 26 C -0.120 4.120 27 O -0.220 6.220 28 C -0.055 4.055 29 C -0.054 4.054 30 O -0.225 6.225 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.232 -5.759 2.793 8.267 hybrid contribution 0.479 0.950 0.152 1.074 sum 5.711 -4.809 2.946 8.026 Atomic orbital electron populations 1.69902 1.06012 1.27625 1.49228 1.24901 0.94840 0.99293 0.94468 0.86498 0.79998 0.82726 0.78368 1.20376 1.20965 1.19643 1.21395 0.93713 0.89963 1.52657 0.91794 1.19708 0.87164 0.82124 0.99272 1.45754 1.44793 1.34330 1.01946 1.19346 0.80271 0.83735 0.84449 1.90869 1.37145 1.25268 1.87247 1.22789 1.03806 1.00366 0.87625 0.82041 1.23505 0.99999 0.91657 0.98712 1.25029 1.02492 0.86922 1.03526 0.80863 1.43377 1.01225 1.02645 0.98160 1.94489 1.77476 1.19113 1.49574 1.94531 1.11566 1.91409 1.36916 1.17113 0.91057 0.95915 0.87038 1.20871 1.00010 0.99644 0.93523 1.20137 0.92058 1.02433 0.97351 1.18770 0.93492 1.01763 0.87229 1.18541 0.82464 1.01471 0.95785 1.20313 0.95190 1.00874 0.95643 1.86325 1.19738 1.88989 1.26985 1.23580 1.00590 0.99080 0.82245 1.23561 0.80712 0.97476 1.03681 1.86285 1.26520 1.78641 1.31066 0.92298 0.94021 0.93615 0.84515 0.85316 0.84753 0.84697 0.84806 0.86404 0.90648 0.90706 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.69 13.29 55.43 0.74 -21.95 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.28 29.54 -169.99 -5.02 14.26 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -12.83 9.38 -34.44 -0.32 -13.15 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.24 5.09 4.84 -5.19 -0.03 5.07 16 10 N -0.54 -10.95 2.56 -114.72 -0.29 -11.25 16 11 C 0.53 10.55 7.20 -10.98 -0.08 10.47 16 12 O -0.53 -11.72 12.30 -18.74 -0.23 -11.95 16 13 C -0.12 -1.97 5.35 -91.77 -0.49 -2.47 16 14 H 0.16 2.38 6.40 -51.93 -0.33 2.05 16 15 C -0.10 -1.35 9.72 -26.71 -0.26 -1.61 16 16 C -0.08 -1.13 6.90 -67.91 -0.47 -1.60 16 17 H 0.17 1.83 8.14 -51.93 -0.42 1.41 16 18 N 0.02 0.41 3.35 -4.88 -0.02 0.39 16 19 O -0.20 -3.85 19.24 -29.46 -0.57 -4.41 16 20 O -0.11 -2.24 15.49 -37.15 -0.58 -2.82 16 21 C 0.18 3.60 5.16 -83.66 -0.43 3.17 16 22 C -0.12 -2.13 9.31 -39.40 -0.37 -2.49 16 23 C -0.10 -1.62 9.95 -39.44 -0.39 -2.01 16 24 C 0.03 0.54 6.50 -39.13 -0.25 0.28 16 25 C 0.06 1.13 6.49 -39.15 -0.25 0.87 16 26 C -0.10 -1.98 8.88 -39.23 -0.35 -2.32 16 27 O -0.31 -4.95 10.42 -32.90 -0.34 -5.29 16 28 C 0.02 0.23 7.26 37.40 0.27 0.50 16 29 C 0.02 0.22 7.26 37.40 0.27 0.50 16 30 O -0.31 -4.49 10.42 -33.19 -0.35 -4.84 16 31 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.04 0.89 6.10 -51.93 -0.32 0.57 16 33 H 0.05 1.05 7.36 -51.93 -0.38 0.67 16 34 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.13 1.85 7.63 -51.93 -0.40 1.45 16 36 H 0.13 2.17 7.83 -52.48 -0.41 1.76 16 37 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.13 2.75 8.05 -52.49 -0.42 2.33 16 39 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -31.62 363.98 -9.18 -40.80 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.77 Total: 4.80 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.25 Total: -3.22 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.43 Total: -32.81 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -2.06 Total: -29.32 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.62 -9.18 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.314 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds