Wall clock time and date at job start Tue Mar 31 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46730 * 2 1 4 4 N 1.46502 * 109.46936 * 240.00754 * 2 1 3 5 5 C 1.39669 * 120.00681 * 84.99875 * 4 2 1 6 6 C 1.38905 * 120.07711 * 179.97438 * 5 4 2 7 7 C 1.38102 * 119.92398 * 179.72013 * 6 5 4 8 8 C 1.38284 * 120.07730 * 0.28542 * 7 6 5 9 9 C 1.50702 * 119.92910 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47375 * 89.99517 * 9 8 7 11 11 O 1.21276 * 119.99759 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00044 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00197 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99788 * 0.02562 * 12 10 9 15 15 C 1.38288 * 120.14784 * 0.02562 * 8 7 6 16 16 C 1.38104 * 120.07459 * 0.02562 * 15 8 7 17 17 C 1.50694 * 109.47147 * 120.00166 * 2 1 3 18 18 O 1.21287 * 119.99920 * 120.00073 * 17 2 1 19 19 N 1.34777 * 120.00161 * 299.99818 * 17 2 1 20 20 C 1.46499 * 119.99791 * 0.02562 * 19 17 2 21 21 C 1.46503 * 119.99824 * 179.97438 * 19 17 2 22 22 C 1.50694 * 109.46952 * 90.00322 * 21 19 17 23 23 H 1.08000 * 119.99932 * 359.97438 * 22 21 19 24 24 C 1.37879 * 120.00110 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99664 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00108 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47290 * 90.00476 * 26 24 22 28 28 H 1.48500 * 109.46912 * 210.00493 * 26 24 22 29 29 H 1.48495 * 109.47128 * 330.00124 * 26 24 22 30 30 H 1.09000 * 109.47198 * 299.99838 * 1 2 3 31 31 H 1.09004 * 109.47565 * 60.00082 * 1 2 3 32 32 H 1.09007 * 109.47026 * 179.97438 * 1 2 3 33 33 H 0.97008 * 119.99236 * 264.99387 * 4 2 1 34 34 H 1.08002 * 120.04044 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.96256 * 180.29943 * 7 6 5 36 36 H 1.08998 * 109.46900 * 209.99776 * 9 8 7 37 37 H 1.09005 * 109.46585 * 329.99345 * 9 8 7 38 38 H 1.09005 * 109.46772 * 90.00527 * 13 12 10 39 39 H 1.09000 * 109.47204 * 210.00522 * 13 12 10 40 40 H 1.08997 * 109.46965 * 330.00475 * 13 12 10 41 41 H 1.09005 * 109.47182 * 90.00211 * 14 12 10 42 42 H 1.09007 * 109.46689 * 209.99654 * 14 12 10 43 43 H 1.08995 * 109.47300 * 329.99167 * 14 12 10 44 44 H 1.08007 * 119.96217 * 179.97438 * 15 8 7 45 45 H 1.07998 * 120.03659 * 179.97438 * 16 15 8 46 46 H 1.09001 * 109.47048 * 90.00037 * 20 19 17 47 47 H 1.08998 * 109.47113 * 209.99561 * 20 19 17 48 48 H 1.08991 * 109.47324 * 329.99907 * 20 19 17 49 49 H 1.08999 * 109.46625 * 210.00149 * 21 19 17 50 50 H 1.09001 * 109.47080 * 330.00148 * 21 19 17 51 51 H 0.97002 * 119.99811 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1517 0.0063 -2.3994 6 6 2.6150 -0.6468 -3.5344 7 6 2.7402 0.0438 -4.7238 8 6 2.4105 1.3854 -4.7842 9 6 2.5490 2.1359 -6.0837 10 6 1.2593 2.0424 -6.8577 11 8 0.3201 1.4273 -6.3991 12 7 1.1494 2.6431 -8.0591 13 6 -0.1041 2.5517 -8.8119 14 6 2.2838 3.3866 -8.6129 15 6 1.9551 2.0402 -3.6546 16 6 1.8285 1.3559 -2.4617 17 6 2.0323 -0.7104 1.2304 18 8 2.7296 -1.6965 1.1191 19 7 1.7068 -0.2500 2.4545 20 6 0.8641 0.9408 2.5890 21 6 2.1947 -0.9410 3.6506 22 6 3.5224 -0.3581 4.0610 23 1 3.9592 0.4463 3.4879 24 6 4.1794 -0.8517 5.1681 25 7 3.6476 -1.8317 5.8657 26 14 5.8248 -0.1287 5.6773 27 1 5.6006 0.9963 6.6203 28 1 6.6415 -1.1761 6.3414 29 1 6.5403 0.3684 4.4748 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 2.8724 -1.6947 -3.4881 35 1 3.0958 -0.4645 -5.6078 36 1 2.7735 3.1822 -5.8768 37 1 3.3575 1.7000 -6.6706 38 1 -0.7527 3.3846 -8.5400 39 1 0.1097 2.5914 -9.8800 40 1 -0.6020 1.6113 -8.5757 41 1 2.9021 2.7153 -9.2089 42 1 1.9149 4.1961 -9.2428 43 1 2.8783 3.8016 -7.7990 44 1 1.6988 3.0882 -3.7050 45 1 1.4731 1.8680 -1.5797 46 1 -0.1838 0.6425 2.6225 47 1 1.1218 1.4663 3.5085 48 1 1.0272 1.5995 1.7361 49 1 1.4766 -0.8155 4.4610 50 1 2.3154 -2.0023 3.4333 51 1 4.1100 -2.1792 6.6443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071902509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:32 Heat of formation + Delta-G solvation = -28.651022 kcal Electronic energy + Delta-G solvation = -29946.849893 eV Core-core repulsion = 25846.760711 eV Total energy + Delta-G solvation = -4100.089182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.34839 -39.73785 -38.74913 -35.98405 -35.61738 -34.97491 -32.94825 -32.26734 -30.87142 -30.21609 -28.51473 -27.64527 -27.00973 -26.18048 -25.33369 -23.98099 -22.98470 -22.07696 -20.88869 -19.48127 -18.71495 -17.65544 -17.28845 -16.58774 -16.53746 -16.32643 -16.04717 -15.65627 -15.25995 -14.90478 -14.71248 -14.48401 -13.91100 -13.83226 -13.77985 -13.48172 -13.36174 -13.26767 -13.09598 -13.01179 -12.92223 -12.62298 -12.45901 -12.34995 -12.20144 -12.06980 -11.92591 -11.56237 -11.52361 -11.29476 -11.13003 -10.92284 -10.74982 -10.60790 -10.19963 -10.18089 -9.80820 -9.66831 -9.05843 -8.97354 -8.79761 -8.46510 -7.73430 -7.21282 -6.07384 -4.12326 1.57579 1.64005 2.41234 2.71222 3.27303 3.28916 3.35394 3.37027 3.42309 3.91765 4.00994 4.41606 4.42592 4.59781 4.70250 4.76623 4.85179 4.89879 5.00302 5.05240 5.08735 5.15122 5.19689 5.23557 5.27048 5.28219 5.30007 5.44736 5.48790 5.51574 5.66982 5.77022 5.79463 5.84776 5.92107 6.06054 6.10678 6.11263 6.28452 6.42685 6.48524 6.72939 6.89059 6.97343 7.03748 7.37368 7.43911 7.50286 7.88523 7.92298 7.93896 8.18978 8.31811 8.83085 8.98257 9.52782 11.00692 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.001857 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.947021 B =15074.355459 C =15517.409356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.130 3.870 3 H 0.098 0.902 4 N -0.724 5.724 5 C 0.233 3.767 6 C -0.196 4.196 7 C -0.054 4.054 8 C -0.142 4.142 9 C -0.086 4.086 10 C 0.510 3.490 11 O -0.524 6.524 12 N -0.630 5.630 13 C 0.085 3.915 14 C 0.077 3.923 15 C -0.054 4.054 16 C -0.202 4.202 17 C 0.502 3.498 18 O -0.537 6.537 19 N -0.596 5.596 20 C 0.078 3.922 21 C 0.245 3.755 22 C -0.528 4.528 23 H 0.057 0.943 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.409 0.591 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.034 0.966 50 H 0.044 0.956 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 12.584 -27.797 31.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 H 0.116 0.884 4 N -0.353 5.353 5 C 0.128 3.872 6 C -0.219 4.219 7 C -0.073 4.073 8 C -0.144 4.144 9 C -0.126 4.126 10 C 0.298 3.702 11 O -0.399 6.399 12 N -0.366 5.366 13 C -0.058 4.058 14 C -0.066 4.066 15 C -0.073 4.073 16 C -0.225 4.225 17 C 0.287 3.713 18 O -0.414 6.414 19 N -0.328 5.328 20 C -0.065 4.065 21 C 0.126 3.874 22 C -0.567 4.567 23 H 0.075 0.925 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.199 1.199 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.062 0.938 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.209 11.696 -27.227 30.276 hybrid contribution 1.023 0.195 0.323 1.090 sum -5.186 11.890 -26.904 29.868 Atomic orbital electron populations 1.22471 0.94004 1.03454 1.03406 1.20749 0.94913 0.97308 0.84993 0.88422 1.44527 1.71909 1.13038 1.05816 1.17833 0.92265 0.91335 0.85799 1.20505 1.08833 1.00255 0.92281 1.20572 0.96993 0.93124 0.96565 1.18868 1.07475 0.94466 0.93636 1.20529 0.95390 1.02060 0.94620 1.20910 0.90367 0.78273 0.80633 1.90731 1.40419 1.40962 1.67744 1.47840 1.14721 1.54124 1.19940 1.21609 0.85823 1.02953 0.95378 1.21824 0.88833 0.96192 0.99732 1.20600 0.96001 0.98865 0.91789 1.20595 1.09978 0.93097 0.98790 1.20274 0.81173 0.85305 0.84539 1.90664 1.37924 1.26857 1.86003 1.48086 1.49405 1.28183 1.07108 1.21850 0.93912 0.88072 1.02712 1.19327 0.94327 0.93712 0.80005 1.21416 1.04834 1.19171 1.11245 0.92455 1.24939 0.97990 0.94927 0.96251 1.69932 1.39065 1.25965 1.18315 0.86482 0.83577 0.78692 0.78603 1.20602 1.21054 1.19897 0.90062 0.91512 0.91908 0.75369 0.86227 0.86749 0.88504 0.88536 0.92891 0.91440 0.90551 0.92477 0.91046 0.90677 0.86763 0.86142 0.93090 0.90567 0.92249 0.94789 0.93783 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.08 37.16 0.34 -1.91 16 2 C 0.13 2.01 1.88 -69.08 -0.13 1.88 16 3 H 0.10 1.40 5.73 -51.93 -0.30 1.10 16 4 N -0.72 -11.25 5.12 -53.29 -0.27 -11.52 16 5 C 0.23 3.36 6.64 -83.79 -0.56 2.80 16 6 C -0.20 -2.64 9.90 -39.38 -0.39 -3.03 16 7 C -0.05 -0.65 9.69 -39.61 -0.38 -1.03 16 8 C -0.14 -1.63 4.38 -104.59 -0.46 -2.08 16 9 C -0.09 -0.70 4.38 -29.03 -0.13 -0.83 16 10 C 0.51 5.23 7.67 -10.99 -0.08 5.14 16 11 O -0.52 -7.73 15.61 5.56 0.09 -7.65 16 12 N -0.63 -4.59 3.27 -189.51 -0.62 -5.21 16 13 C 0.09 0.54 10.44 59.85 0.62 1.17 16 14 C 0.08 0.27 10.24 59.85 0.61 0.88 16 15 C -0.05 -0.64 9.69 -39.61 -0.38 -1.03 16 16 C -0.20 -2.67 8.87 -39.38 -0.35 -3.02 16 17 C 0.50 10.34 7.14 -10.99 -0.08 10.27 16 18 O -0.54 -13.36 15.42 5.55 0.09 -13.28 16 19 N -0.60 -12.39 2.86 -182.96 -0.52 -12.91 16 20 C 0.08 1.19 8.80 59.85 0.53 1.72 16 21 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 22 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 23 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 26 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.08 0.93 4.53 -51.93 -0.24 0.69 16 31 H 0.07 0.79 7.76 -51.93 -0.40 0.39 16 32 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.41 6.70 7.80 -40.82 -0.32 6.39 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.10 0.57 7.34 -51.93 -0.38 0.19 16 37 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 40 H 0.08 0.63 7.42 -51.93 -0.39 0.24 16 41 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.07 0.15 8.07 -51.93 -0.42 -0.27 16 43 H 0.07 0.18 6.44 -51.93 -0.33 -0.15 16 44 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 45 H 0.12 1.46 6.15 -52.49 -0.32 1.13 16 46 H 0.05 0.66 6.95 -51.93 -0.36 0.29 16 47 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 48 H 0.06 0.73 6.00 -51.93 -0.31 0.42 16 49 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 50 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 413.83 15.07 6.24 6.24 Total: -1.00 -36.69 413.83 -8.49 -45.18 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.91 Total: 4.40 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.29 Total: 3.64 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.68 Total: -55.42 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.17 Total: -20.93 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.69 -8.49 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071902509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.528 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds