Wall clock time and date at job start Tue Mar 31 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46730 * 2 1 4 4 N 1.46502 * 109.46936 * 240.00754 * 2 1 3 5 5 C 1.39669 * 120.00681 * 84.99875 * 4 2 1 6 6 C 1.38905 * 120.07711 * 179.97438 * 5 4 2 7 7 C 1.38102 * 119.92398 * 179.72013 * 6 5 4 8 8 C 1.38284 * 120.07730 * 0.28542 * 7 6 5 9 9 C 1.50702 * 119.92910 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47375 * 89.99517 * 9 8 7 11 11 O 1.21276 * 119.99759 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00044 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00197 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99788 * 0.02562 * 12 10 9 15 15 C 1.38288 * 120.14784 * 0.02562 * 8 7 6 16 16 C 1.38104 * 120.07459 * 0.02562 * 15 8 7 17 17 C 1.50694 * 109.47147 * 120.00166 * 2 1 3 18 18 O 1.21287 * 119.99920 * 120.00073 * 17 2 1 19 19 N 1.34777 * 120.00161 * 299.99818 * 17 2 1 20 20 C 1.46499 * 119.99791 * 0.02562 * 19 17 2 21 21 C 1.46503 * 119.99824 * 179.97438 * 19 17 2 22 22 C 1.50694 * 109.46952 * 90.00322 * 21 19 17 23 23 H 1.08000 * 119.99932 * 359.97438 * 22 21 19 24 24 C 1.37879 * 120.00110 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99664 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00108 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47290 * 90.00476 * 26 24 22 28 28 H 1.48500 * 109.46912 * 210.00493 * 26 24 22 29 29 H 1.48495 * 109.47128 * 330.00124 * 26 24 22 30 30 H 1.09000 * 109.47198 * 299.99838 * 1 2 3 31 31 H 1.09004 * 109.47565 * 60.00082 * 1 2 3 32 32 H 1.09007 * 109.47026 * 179.97438 * 1 2 3 33 33 H 0.97008 * 119.99236 * 264.99387 * 4 2 1 34 34 H 1.08002 * 120.04044 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.96256 * 180.29943 * 7 6 5 36 36 H 1.08998 * 109.46900 * 209.99776 * 9 8 7 37 37 H 1.09005 * 109.46585 * 329.99345 * 9 8 7 38 38 H 1.09005 * 109.46772 * 90.00527 * 13 12 10 39 39 H 1.09000 * 109.47204 * 210.00522 * 13 12 10 40 40 H 1.08997 * 109.46965 * 330.00475 * 13 12 10 41 41 H 1.09005 * 109.47182 * 90.00211 * 14 12 10 42 42 H 1.09007 * 109.46689 * 209.99654 * 14 12 10 43 43 H 1.08995 * 109.47300 * 329.99167 * 14 12 10 44 44 H 1.08007 * 119.96217 * 179.97438 * 15 8 7 45 45 H 1.07998 * 120.03659 * 179.97438 * 16 15 8 46 46 H 1.09001 * 109.47048 * 90.00037 * 20 19 17 47 47 H 1.08998 * 109.47113 * 209.99561 * 20 19 17 48 48 H 1.08991 * 109.47324 * 329.99907 * 20 19 17 49 49 H 1.08999 * 109.46625 * 210.00149 * 21 19 17 50 50 H 1.09001 * 109.47080 * 330.00148 * 21 19 17 51 51 H 0.97002 * 119.99811 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1517 0.0063 -2.3994 6 6 2.6150 -0.6468 -3.5344 7 6 2.7402 0.0438 -4.7238 8 6 2.4105 1.3854 -4.7842 9 6 2.5490 2.1359 -6.0837 10 6 1.2593 2.0424 -6.8577 11 8 0.3201 1.4273 -6.3991 12 7 1.1494 2.6431 -8.0591 13 6 -0.1041 2.5517 -8.8119 14 6 2.2838 3.3866 -8.6129 15 6 1.9551 2.0402 -3.6546 16 6 1.8285 1.3559 -2.4617 17 6 2.0323 -0.7104 1.2304 18 8 2.7296 -1.6965 1.1191 19 7 1.7068 -0.2500 2.4545 20 6 0.8641 0.9408 2.5890 21 6 2.1947 -0.9410 3.6506 22 6 3.5224 -0.3581 4.0610 23 1 3.9592 0.4463 3.4879 24 6 4.1794 -0.8517 5.1681 25 7 3.6476 -1.8317 5.8657 26 14 5.8248 -0.1287 5.6773 27 1 5.6006 0.9963 6.6203 28 1 6.6415 -1.1761 6.3414 29 1 6.5403 0.3684 4.4748 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 2.8724 -1.6947 -3.4881 35 1 3.0958 -0.4645 -5.6078 36 1 2.7735 3.1822 -5.8768 37 1 3.3575 1.7000 -6.6706 38 1 -0.7527 3.3846 -8.5400 39 1 0.1097 2.5914 -9.8800 40 1 -0.6020 1.6113 -8.5757 41 1 2.9021 2.7153 -9.2089 42 1 1.9149 4.1961 -9.2428 43 1 2.8783 3.8016 -7.7990 44 1 1.6988 3.0882 -3.7050 45 1 1.4731 1.8680 -1.5797 46 1 -0.1838 0.6425 2.6225 47 1 1.1218 1.4663 3.5085 48 1 1.0272 1.5995 1.7361 49 1 1.4766 -0.8155 4.4610 50 1 2.3154 -2.0023 3.4333 51 1 4.1100 -2.1792 6.6443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071902509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:31 Heat of formation + Delta-G solvation = -53.373384 kcal Electronic energy + Delta-G solvation = -29947.921935 eV Core-core repulsion = 25846.760711 eV Total energy + Delta-G solvation = -4101.161224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.33000 -40.92254 -39.83911 -37.04736 -36.67934 -36.39294 -34.84705 -33.44759 -31.80248 -31.30403 -29.55680 -28.96012 -27.80085 -27.50615 -26.12028 -25.59063 -24.18249 -23.36103 -21.93547 -20.23014 -20.09038 -18.92871 -18.64404 -17.92495 -17.68915 -17.28243 -16.91270 -16.88856 -16.61396 -16.43334 -15.90462 -15.68029 -15.21987 -14.92012 -14.69007 -14.43830 -14.35449 -14.21660 -14.16227 -14.05089 -13.82405 -13.56293 -13.43188 -13.36157 -13.33945 -13.26794 -12.91883 -12.90248 -12.73653 -12.69930 -12.58771 -12.42858 -12.24673 -12.13910 -11.74776 -11.66721 -11.12731 -10.73183 -10.66208 -10.58655 -9.75273 -9.61037 -9.48947 -8.26543 -8.24887 -6.39685 0.61835 0.69529 1.34877 1.38002 1.48056 1.69093 1.70924 2.04474 2.17999 2.36706 2.62741 3.02038 3.04834 3.51460 3.81388 3.87866 3.98457 4.03592 4.12002 4.20563 4.32944 4.37018 4.44029 4.50387 4.53783 4.57532 4.59744 4.67121 4.71337 4.75035 4.80745 4.87351 4.91290 4.94653 4.96771 4.99108 5.03729 5.18348 5.18808 5.23417 5.45390 5.50904 5.52340 5.59291 5.77873 5.81451 6.00703 6.02776 6.36859 6.44195 6.64694 6.69961 6.76760 7.22207 7.26643 7.37114 8.82143 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.001857 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.947021 B =15074.355459 C =15517.409356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.146 3.854 3 H 0.116 0.884 4 N -0.735 5.735 5 C 0.209 3.791 6 C -0.212 4.212 7 C -0.063 4.063 8 C -0.141 4.141 9 C -0.082 4.082 10 C 0.504 3.496 11 O -0.582 6.582 12 N -0.627 5.627 13 C 0.081 3.919 14 C 0.069 3.931 15 C -0.061 4.061 16 C -0.210 4.210 17 C 0.492 3.508 18 O -0.592 6.592 19 N -0.601 5.601 20 C 0.070 3.930 21 C 0.259 3.741 22 C -0.544 4.544 23 H 0.053 0.947 24 C 0.008 3.992 25 N -0.927 5.927 26 Si 0.968 3.032 27 H -0.261 1.261 28 H -0.281 1.281 29 H -0.275 1.275 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.400 0.600 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.029 0.971 50 H -0.002 1.002 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 16.081 -29.926 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 H 0.134 0.866 4 N -0.365 5.365 5 C 0.106 3.894 6 C -0.235 4.235 7 C -0.082 4.082 8 C -0.143 4.143 9 C -0.121 4.121 10 C 0.293 3.707 11 O -0.462 6.462 12 N -0.361 5.361 13 C -0.061 4.061 14 C -0.073 4.073 15 C -0.080 4.080 16 C -0.232 4.232 17 C 0.280 3.720 18 O -0.473 6.473 19 N -0.332 5.332 20 C -0.072 4.072 21 C 0.138 3.862 22 C -0.583 4.583 23 H 0.071 0.929 24 C -0.191 4.191 25 N -0.566 5.566 26 Si 0.792 3.208 27 H -0.186 1.186 28 H -0.207 1.207 29 H -0.200 1.200 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.235 0.765 34 H 0.136 0.864 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.047 0.953 50 H 0.016 0.984 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.699 15.281 -29.418 33.636 hybrid contribution 0.841 -0.866 0.835 1.468 sum -4.859 14.415 -28.582 32.378 Atomic orbital electron populations 1.22438 0.91683 1.03217 1.05070 1.20688 0.96390 0.96910 0.82320 0.86647 1.44549 1.73011 1.12676 1.06267 1.18035 0.93762 0.92087 0.85511 1.20699 1.09293 1.00579 0.92920 1.20872 0.96937 0.93797 0.96594 1.19294 1.05571 0.94379 0.95087 1.20602 0.95050 1.03508 0.92936 1.21270 0.90287 0.77760 0.81356 1.90712 1.42340 1.43751 1.69355 1.47986 1.15864 1.53203 1.19042 1.21686 0.85738 1.01754 0.96945 1.22123 0.87867 0.96634 1.00643 1.20955 0.95509 1.00072 0.91465 1.20820 1.09918 0.92606 0.99885 1.21259 0.80158 0.84794 0.85795 1.90626 1.40383 1.29392 1.86911 1.48072 1.49861 1.29457 1.05792 1.22207 0.94421 0.86411 1.04115 1.18798 0.93880 0.91714 0.81848 1.21686 1.05923 1.19213 1.11461 0.92915 1.25859 1.01816 0.95231 0.96244 1.70049 1.40708 1.27086 1.18785 0.85409 0.78677 0.78372 0.78315 1.18599 1.20651 1.19963 0.88189 0.89850 0.93178 0.76484 0.86381 0.85002 0.85608 0.86025 0.92568 0.88567 0.93059 0.91220 0.89302 0.89215 0.84421 0.85049 0.90182 0.91057 0.88725 0.95346 0.98416 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.08 71.98 0.65 -3.34 16 2 C 0.15 4.45 1.88 44.24 0.08 4.53 16 3 H 0.12 3.09 5.73 -2.39 -0.01 3.08 16 4 N -0.74 -23.37 5.12 -322.51 -1.65 -25.02 16 5 C 0.21 6.03 6.64 38.21 0.25 6.29 16 6 C -0.21 -5.80 9.90 22.40 0.22 -5.58 16 7 C -0.06 -1.48 9.69 22.25 0.22 -1.26 16 8 C -0.14 -2.95 4.38 -19.84 -0.09 -3.04 16 9 C -0.08 -1.06 4.38 29.10 0.13 -0.94 16 10 C 0.50 9.36 7.67 87.66 0.67 10.04 16 11 O -0.58 -16.99 15.61 -3.02 -0.05 -17.04 16 12 N -0.63 -7.56 3.27 -871.88 -2.85 -10.41 16 13 C 0.08 0.91 10.44 127.77 1.33 2.24 16 14 C 0.07 0.21 10.24 127.77 1.31 1.51 16 15 C -0.06 -1.34 9.69 22.25 0.22 -1.12 16 16 C -0.21 -5.25 8.87 22.40 0.20 -5.06 16 17 C 0.49 20.81 7.14 87.65 0.63 21.44 16 18 O -0.59 -31.16 15.42 -3.05 -0.05 -31.21 16 19 N -0.60 -25.33 2.86 -851.15 -2.43 -27.76 16 20 C 0.07 2.01 8.80 127.77 1.12 3.13 16 21 C 0.26 14.02 5.16 85.63 0.44 14.46 16 22 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 23 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 24 C 0.01 0.44 5.46 84.65 0.46 0.91 16 25 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 26 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 27 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 29 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 30 H 0.10 1.99 4.53 -2.39 -0.01 1.98 16 31 H 0.08 1.78 7.76 -2.38 -0.02 1.76 16 32 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.40 13.95 7.80 -92.70 -0.72 13.23 16 34 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.13 0.92 7.34 -2.39 -0.02 0.90 16 37 H 0.12 0.99 8.05 -2.38 -0.02 0.97 16 38 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 40 H 0.05 0.84 7.42 -2.39 -0.02 0.83 16 41 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 42 H 0.09 0.00 8.07 -2.38 -0.02 -0.02 16 43 H 0.09 0.03 6.44 -2.39 -0.02 0.02 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.13 2.87 6.15 -2.91 -0.02 2.85 16 46 H 0.08 1.85 6.95 -2.39 -0.02 1.83 16 47 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 48 H 0.09 2.04 6.00 -2.39 -0.01 2.03 16 49 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 50 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 51 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -85.17 413.83 3.59 -81.58 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.22 Total: 25.72 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 8.09 Total: 12.88 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -6.65 Total: -119.17 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.09 Total: -48.25 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -85.17 3.59 -81.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071902509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.205 kcal (2) G-P(sol) polarization free energy of solvation -85.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds