Wall clock time and date at job start Tue Mar 31 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47543 * 2 1 4 4 N 1.46501 * 109.46902 * 120.00211 * 2 1 3 5 5 C 1.39674 * 120.00205 * 274.99846 * 4 2 1 6 6 C 1.38910 * 120.07586 * 180.02562 * 5 4 2 7 7 C 1.38107 * 119.92471 * 179.97438 * 6 5 4 8 8 C 1.38285 * 120.07241 * 0.27192 * 7 6 5 9 9 C 1.50703 * 119.92531 * 179.70251 * 8 7 6 10 10 C 1.50698 * 109.47030 * 89.99896 * 9 8 7 11 11 O 1.21280 * 119.99871 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99886 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99818 * 179.97438 * 12 10 9 14 14 C 1.46499 * 120.00041 * 0.02562 * 12 10 9 15 15 C 1.38292 * 120.15075 * 359.44768 * 8 7 6 16 16 C 1.38105 * 120.07416 * 0.55289 * 15 8 7 17 17 C 1.50700 * 109.47140 * 240.00176 * 2 1 3 18 18 O 1.21281 * 119.99887 * 245.87489 * 17 2 1 19 19 N 1.34773 * 120.00020 * 65.87685 * 17 2 1 20 20 C 1.46501 * 120.00034 * 4.64460 * 19 17 2 21 21 C 1.46502 * 120.00011 * 184.64688 * 19 17 2 22 22 C 1.50703 * 109.47068 * 89.99604 * 21 19 17 23 23 H 1.07994 * 120.00278 * 0.02562 * 22 21 19 24 24 C 1.37876 * 119.99518 * 179.97438 * 22 21 19 25 25 N 1.31516 * 120.00576 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99669 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.46905 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47332 * 120.00187 * 26 24 22 29 29 H 1.48507 * 109.46753 * 240.00119 * 26 24 22 30 30 H 1.09006 * 109.46801 * 69.35602 * 1 2 3 31 31 H 1.09000 * 109.47296 * 189.35979 * 1 2 3 32 32 H 1.09006 * 109.46816 * 309.36324 * 1 2 3 33 33 H 0.97004 * 119.99879 * 95.00270 * 4 2 1 34 34 H 1.08000 * 120.03853 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.96428 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.47282 * 210.00483 * 9 8 7 37 37 H 1.09000 * 109.46936 * 330.00274 * 9 8 7 38 38 H 1.09000 * 109.46823 * 60.00470 * 13 12 10 39 39 H 1.09001 * 109.46790 * 179.97438 * 13 12 10 40 40 H 1.09000 * 109.47412 * 300.00649 * 13 12 10 41 41 H 1.09003 * 109.47098 * 90.00025 * 14 12 10 42 42 H 1.08997 * 109.46841 * 209.99746 * 14 12 10 43 43 H 1.09002 * 109.47075 * 329.99945 * 14 12 10 44 44 H 1.07997 * 119.96346 * 180.24914 * 15 8 7 45 45 H 1.07996 * 120.03517 * 179.70135 * 16 15 8 46 46 H 1.08995 * 109.47157 * 95.81751 * 20 19 17 47 47 H 1.09003 * 109.46685 * 215.82184 * 20 19 17 48 48 H 1.08997 * 109.47023 * 335.81624 * 20 19 17 49 49 H 1.08997 * 109.47029 * 209.99732 * 21 19 17 50 50 H 1.09002 * 109.47190 * 329.99825 * 21 19 17 51 51 H 0.97000 * 119.99826 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1517 0.0060 2.3994 6 6 2.6150 -0.6472 3.5344 7 6 2.7463 0.0449 4.7223 8 6 2.4116 1.3852 4.7840 9 6 2.5498 2.1355 6.0837 10 6 3.9297 2.7343 6.1738 11 8 4.7227 2.5686 5.2713 12 7 4.2825 3.4541 7.2573 13 6 5.6242 4.0358 7.3451 14 6 3.3248 3.6537 8.3477 15 6 1.9555 2.0400 3.6546 16 6 1.8219 1.3540 2.4634 17 6 2.0323 -0.7104 -1.2305 18 8 2.6392 -1.7548 -1.1224 19 7 1.8072 -0.1850 -2.4510 20 6 1.1646 1.1255 -2.5772 21 6 2.2051 -0.9244 -3.6515 22 6 1.0676 -1.8061 -4.0985 23 1 0.1409 -1.8145 -3.5441 24 6 1.2098 -2.6011 -5.2159 25 7 2.3382 -2.5905 -5.8914 26 14 -0.2005 -3.6936 -5.7704 27 1 -1.3508 -3.5238 -4.8468 28 1 -0.6096 -3.3135 -7.1464 29 1 0.2382 -5.1123 -5.7585 30 1 -0.3633 0.3623 -0.9617 31 1 -0.3634 -1.0140 0.1671 32 1 -0.3633 0.6518 0.7946 33 1 2.2490 -1.6319 1.1525 34 1 2.8724 -1.6951 3.4879 35 1 3.1060 -0.4625 5.6052 36 1 1.8052 2.9304 6.1252 37 1 2.3961 1.4499 6.9171 38 1 5.7781 4.7215 6.5119 39 1 5.7241 4.5785 8.2851 40 1 6.3685 3.2405 7.3033 41 1 3.4289 2.8483 9.0748 42 1 3.5214 4.6094 8.8335 43 1 2.3114 3.6519 7.9461 44 1 1.6989 3.0878 3.7052 45 1 1.4611 1.8648 1.5830 46 1 1.9281 1.8956 -2.6868 47 1 0.5163 1.1293 -3.4535 48 1 0.5711 1.3265 -1.6853 49 1 2.4533 -0.2207 -4.4460 50 1 3.0758 -1.5405 -3.4269 51 1 2.4382 -3.1502 -6.6773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071902510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:35 Heat of formation + Delta-G solvation = -27.228057 kcal Electronic energy + Delta-G solvation = -29932.892935 eV Core-core repulsion = 25832.865458 eV Total energy + Delta-G solvation = -4100.027477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.34179 -39.73199 -38.74857 -35.99246 -35.62204 -34.94557 -32.93037 -32.28727 -30.88687 -30.22564 -28.50490 -27.68088 -27.03400 -26.11611 -25.35043 -23.95714 -23.00496 -22.09076 -20.89565 -19.48649 -18.68651 -17.64742 -17.25894 -16.59420 -16.52084 -16.34877 -16.06175 -15.67386 -15.19002 -14.88786 -14.70128 -14.50520 -14.06995 -13.81245 -13.73331 -13.54524 -13.32634 -13.25923 -13.12473 -13.07379 -12.89280 -12.61510 -12.45038 -12.39878 -12.09120 -12.05925 -11.98330 -11.51853 -11.47858 -11.28874 -11.18952 -10.87976 -10.75281 -10.61573 -10.19719 -10.18921 -9.81357 -9.64643 -9.05138 -8.97342 -8.81333 -8.47114 -7.71308 -7.22722 -6.07566 -4.12868 1.55918 1.62377 2.42592 2.71576 3.26461 3.27491 3.35471 3.37625 3.41247 3.90509 4.02088 4.40378 4.41309 4.58806 4.68931 4.75276 4.86271 4.90319 4.97217 5.04111 5.08061 5.14565 5.20273 5.23954 5.26795 5.27384 5.30342 5.44617 5.48939 5.50653 5.64849 5.75401 5.81491 5.89041 5.92438 6.07173 6.09740 6.14119 6.33131 6.41414 6.47119 6.71470 6.88726 6.98505 7.04187 7.39707 7.44250 7.50371 7.88457 7.92192 7.95318 8.18851 8.33119 8.83006 8.98467 9.52334 11.00528 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027713 B = 0.001780 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.106506 B =15724.386983 C =15864.689071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 H 0.096 0.904 4 N -0.724 5.724 5 C 0.232 3.768 6 C -0.196 4.196 7 C -0.053 4.053 8 C -0.142 4.142 9 C -0.086 4.086 10 C 0.508 3.492 11 O -0.521 6.521 12 N -0.631 5.631 13 C 0.090 3.910 14 C 0.078 3.922 15 C -0.053 4.053 16 C -0.203 4.203 17 C 0.503 3.497 18 O -0.539 6.539 19 N -0.596 5.596 20 C 0.066 3.934 21 C 0.244 3.756 22 C -0.528 4.528 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.045 0.955 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 15.624 28.648 32.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 H 0.114 0.886 4 N -0.354 5.354 5 C 0.127 3.873 6 C -0.219 4.219 7 C -0.072 4.072 8 C -0.145 4.145 9 C -0.125 4.125 10 C 0.296 3.704 11 O -0.396 6.396 12 N -0.367 5.367 13 C -0.053 4.053 14 C -0.066 4.066 15 C -0.072 4.072 16 C -0.225 4.225 17 C 0.288 3.712 18 O -0.416 6.416 19 N -0.328 5.328 20 C -0.077 4.077 21 C 0.125 3.875 22 C -0.567 4.567 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.052 0.948 50 H 0.063 0.937 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.576 15.000 27.828 31.653 hybrid contribution -0.630 -0.835 -0.398 1.120 sum -2.206 14.165 27.430 30.950 Atomic orbital electron populations 1.22406 0.93792 1.03553 1.03100 1.20759 0.95059 0.97155 0.85034 0.88624 1.44571 1.71878 1.13125 1.05805 1.17845 0.92275 0.91360 0.85785 1.20515 1.08822 1.00323 0.92246 1.20578 0.96360 0.93416 0.96862 1.18876 1.07261 0.94179 0.94179 1.20524 0.94122 1.00193 0.97702 1.20900 0.90150 0.78127 0.81186 1.90752 1.52946 1.58234 1.37625 1.47864 1.14736 1.54046 1.20034 1.21591 0.83298 0.98510 1.01891 1.21851 0.93100 1.01834 0.89787 1.20597 0.96493 0.98427 0.91709 1.20595 1.10038 0.93149 0.98750 1.20258 0.80568 0.85802 0.84541 1.90653 1.41440 1.23585 1.85961 1.48066 1.58484 1.19095 1.07120 1.21994 0.97733 0.84906 1.03100 1.19333 0.96836 0.91444 0.79894 1.21453 0.99987 1.24316 1.10913 0.92347 1.24949 0.96034 0.96803 0.96354 1.69945 1.24677 1.39986 1.18587 0.86434 0.82142 0.80464 0.78320 1.19802 1.20919 1.20867 0.90059 0.91514 0.91588 0.75232 0.86212 0.86748 0.88539 0.88575 0.92193 0.90897 0.92198 0.92525 0.91048 0.90729 0.86769 0.86137 0.93417 0.90661 0.91112 0.94828 0.93686 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 8.91 37.16 0.33 -1.94 16 2 C 0.13 2.01 1.84 -69.08 -0.13 1.88 16 3 H 0.10 1.33 6.07 -51.93 -0.32 1.01 16 4 N -0.72 -11.20 5.16 -53.29 -0.27 -11.48 16 5 C 0.23 3.29 6.64 -83.79 -0.56 2.74 16 6 C -0.20 -2.60 9.90 -39.38 -0.39 -2.99 16 7 C -0.05 -0.63 9.69 -39.61 -0.38 -1.02 16 8 C -0.14 -1.59 4.38 -104.58 -0.46 -2.05 16 9 C -0.09 -0.67 4.38 -29.03 -0.13 -0.80 16 10 C 0.51 5.27 7.67 -10.99 -0.08 5.19 16 11 O -0.52 -7.94 16.03 5.56 0.09 -7.85 16 12 N -0.63 -4.62 3.27 -189.51 -0.62 -5.24 16 13 C 0.09 0.59 10.16 59.85 0.61 1.20 16 14 C 0.08 0.25 10.21 59.85 0.61 0.86 16 15 C -0.05 -0.62 9.69 -39.61 -0.38 -1.01 16 16 C -0.20 -2.61 8.93 -39.38 -0.35 -2.96 16 17 C 0.50 10.46 7.05 -10.99 -0.08 10.38 16 18 O -0.54 -13.48 15.37 5.56 0.09 -13.39 16 19 N -0.60 -12.54 2.86 -182.95 -0.52 -13.06 16 20 C 0.07 1.03 9.74 59.85 0.58 1.61 16 21 C 0.24 6.39 5.22 -5.19 -0.03 6.37 16 22 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 23 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 24 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 26 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.08 1.05 5.41 -51.93 -0.28 0.77 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.73 7.65 -51.93 -0.40 0.34 16 33 H 0.41 6.78 7.75 -40.82 -0.32 6.47 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.10 0.53 7.35 -51.93 -0.38 0.15 16 37 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.26 7.79 -51.93 -0.40 -0.14 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.07 0.13 7.92 -51.93 -0.41 -0.28 16 43 H 0.07 0.16 6.44 -51.93 -0.33 -0.18 16 44 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.40 5.99 -52.49 -0.31 1.09 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 1.19 8.11 -51.93 -0.42 0.76 16 48 H 0.07 0.87 4.11 -51.93 -0.21 0.66 16 49 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 50 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 51 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 415.17 15.07 6.26 6.26 Total: -1.00 -36.92 415.17 -8.46 -45.38 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.94 Total: 4.56 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.25 Total: 3.91 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.68 Total: -55.62 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.17 Total: -21.24 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.92 -8.46 -45.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071902510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.149 kcal (2) G-P(sol) polarization free energy of solvation -36.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds