Wall clock time and date at job start Tue Mar 31 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 N 1.46496 * 109.46826 * 240.00173 * 2 1 3 5 5 C 1.39982 * 120.00101 * 85.00353 * 4 2 1 6 6 C 1.38859 * 119.99433 * 179.97438 * 5 4 2 7 7 C 1.38148 * 120.03541 * 180.02562 * 6 5 4 8 8 C 1.38777 * 120.02453 * 359.97438 * 7 6 5 9 9 N 1.40169 * 120.00457 * 179.97438 * 8 7 6 10 10 C 1.48524 * 111.00228 * 8.09074 * 9 8 7 11 11 C 1.54933 * 103.22752 * 159.72173 * 10 9 8 12 12 C 1.54592 * 102.92103 * 322.58748 * 11 10 9 13 13 C 1.47902 * 110.99820 * 125.49061 * 9 8 7 14 14 C 1.39036 * 119.98283 * 0.02562 * 8 7 6 15 15 F 1.35104 * 120.01321 * 179.97438 * 14 8 7 16 16 C 1.38259 * 119.96812 * 359.72512 * 14 8 7 17 17 C 1.50698 * 109.46836 * 120.00197 * 2 1 3 18 18 O 1.21282 * 120.00025 * 92.85115 * 17 2 1 19 19 N 1.34783 * 120.00081 * 272.84821 * 17 2 1 20 20 C 1.46496 * 120.00069 * 183.65404 * 19 17 2 21 21 C 1.46505 * 119.99696 * 3.64744 * 19 17 2 22 22 C 1.50699 * 109.46778 * 92.26630 * 21 19 17 23 23 H 1.07997 * 120.00217 * 0.02562 * 22 21 19 24 24 C 1.37871 * 120.00162 * 179.97438 * 22 21 19 25 25 N 1.31507 * 120.00532 * 180.02562 * 24 22 21 26 26 Si 1.86809 * 119.99667 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47095 * 90.00194 * 26 24 22 28 28 H 1.48502 * 109.46693 * 209.99696 * 26 24 22 29 29 H 1.48501 * 109.47083 * 329.99568 * 26 24 22 30 30 H 1.08998 * 109.46878 * 176.97436 * 1 2 3 31 31 H 1.09004 * 109.47286 * 296.97297 * 1 2 3 32 32 H 1.09004 * 109.47237 * 56.97343 * 1 2 3 33 33 H 0.97002 * 119.99729 * 264.99434 * 4 2 1 34 34 H 1.07995 * 119.98350 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.98658 * 180.02562 * 7 6 5 36 36 H 1.09007 * 110.66649 * 278.15650 * 10 9 8 37 37 H 1.09000 * 110.66670 * 41.28351 * 10 9 8 38 38 H 1.08998 * 110.72552 * 204.22684 * 11 10 9 39 39 H 1.08998 * 110.72501 * 80.94516 * 11 10 9 40 40 H 1.09007 * 110.30708 * 263.03786 * 12 11 10 41 41 H 1.09000 * 110.30978 * 140.87589 * 12 11 10 42 42 H 1.09002 * 109.91555 * 333.50643 * 13 9 8 43 43 H 1.09005 * 109.91430 * 94.79947 * 13 9 8 44 44 H 1.08001 * 120.01252 * 180.29592 * 16 14 8 45 45 H 1.09001 * 109.47084 * 274.82935 * 20 19 17 46 46 H 1.09004 * 109.47536 * 34.82663 * 20 19 17 47 47 H 1.08999 * 109.47522 * 154.83214 * 20 19 17 48 48 H 1.09001 * 109.46919 * 212.26569 * 21 19 17 49 49 H 1.08995 * 109.47260 * 332.26918 * 21 19 17 50 50 H 0.97007 * 120.00500 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1520 0.0078 -2.4020 6 6 2.6153 -0.6468 -3.5356 7 6 2.7481 0.0417 -4.7259 8 6 2.4181 1.3882 -4.7898 9 7 2.5535 2.0865 -5.9976 10 6 2.8753 1.1614 -7.1141 11 6 2.4706 1.9700 -8.3723 12 6 1.1959 2.7128 -7.9106 13 6 1.2843 2.7462 -6.3736 14 6 1.9541 2.0444 -3.6553 15 9 1.6331 3.3554 -3.7167 16 6 1.8165 1.3536 -2.4656 17 6 2.0323 -0.7105 1.2304 18 8 2.2836 -1.8961 1.1859 19 7 2.2022 -0.0282 2.3804 20 6 2.7658 -0.6998 3.5540 21 6 1.8234 1.3849 2.4565 22 6 0.4041 1.4986 2.9501 23 1 -0.1592 0.6074 3.1842 24 6 -0.1749 2.7403 3.1040 25 7 -1.4133 2.8396 3.5352 26 14 0.7997 4.2819 2.6998 27 1 0.5941 4.6376 1.2728 28 1 0.3366 5.4000 3.5603 29 1 2.2431 4.0334 2.9451 30 1 -0.3633 -1.0262 -0.0542 31 1 -0.3634 0.4661 0.9159 32 1 -0.3634 0.5601 -0.8616 33 1 2.2490 -1.6317 -1.1526 34 1 2.8728 -1.6945 -3.4865 35 1 3.1081 -0.4683 -5.6071 36 1 3.9411 0.9333 -7.1297 37 1 2.2863 0.2474 -7.0383 38 1 2.2479 1.3024 -9.2047 39 1 3.2531 2.6786 -8.6435 40 1 0.3057 2.1689 -8.2267 41 1 1.1829 3.7266 -8.3109 42 1 0.4424 2.2053 -5.9413 43 1 1.2847 3.7786 -6.0239 44 1 1.4516 1.8616 -1.5851 45 1 1.9702 -1.2085 4.0985 46 1 3.5100 -1.4287 3.2332 47 1 3.2364 0.0380 4.2038 48 1 2.4903 1.9033 3.1454 49 1 1.9011 1.8357 1.4672 50 1 -1.8208 3.7133 3.6431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071902529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:16 Heat of formation + Delta-G solvation = -32.098610 kcal Electronic energy + Delta-G solvation = -31492.870973 eV Core-core repulsion = 27241.860510 eV Total energy + Delta-G solvation = -4251.010464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.191 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.71857 -40.27889 -39.63936 -38.19537 -35.47083 -35.19151 -32.63623 -32.42833 -30.80663 -30.24909 -29.08359 -28.46263 -26.93547 -26.49458 -23.79836 -23.00405 -22.60849 -22.24971 -20.91236 -20.57196 -18.70222 -18.08716 -17.20379 -17.13960 -16.50562 -16.36604 -16.31458 -15.61641 -15.38899 -15.06563 -14.92417 -14.51543 -14.38518 -14.06621 -13.86121 -13.73765 -13.29480 -13.18448 -13.17040 -12.84935 -12.63497 -12.49136 -12.36006 -12.18269 -11.98929 -11.79814 -11.69190 -11.62353 -11.58835 -11.42902 -11.25988 -10.97132 -10.95817 -10.83777 -10.73492 -10.35151 -10.18815 -9.70954 -9.29661 -8.94857 -8.79778 -8.71923 -7.92760 -7.06281 -6.30600 -4.33189 1.25120 1.45066 3.02608 3.13416 3.20372 3.23440 3.30965 3.54770 3.84868 3.91112 4.19348 4.32698 4.34626 4.44776 4.70218 4.77598 4.95832 4.98541 4.99531 5.09730 5.19085 5.26664 5.33409 5.39968 5.49364 5.51560 5.54329 5.60988 5.69253 5.76026 5.79886 5.82970 5.90619 5.98388 6.02772 6.09013 6.15367 6.18662 6.25860 6.30405 6.34988 6.52239 6.60456 6.73038 6.86683 7.06772 7.15635 7.32320 7.39178 7.85009 7.94449 8.27632 8.63146 8.75088 9.27589 10.81220 Molecular weight = 349.19amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.002996 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.845476 B = 9342.390973 C =10934.018998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.134 3.866 3 H 0.101 0.899 4 N -0.725 5.725 5 C 0.238 3.762 6 C -0.185 4.185 7 C -0.088 4.088 8 C -0.002 4.002 9 N -0.462 5.462 10 C 0.031 3.969 11 C -0.124 4.124 12 C -0.131 4.131 13 C 0.034 3.966 14 C 0.133 3.867 15 F -0.135 7.135 16 C -0.217 4.217 17 C 0.517 3.483 18 O -0.568 6.568 19 N -0.588 5.588 20 C 0.096 3.904 21 C 0.203 3.797 22 C -0.544 4.544 23 H 0.081 0.919 24 C 0.080 3.920 25 N -0.885 5.885 26 Si 0.866 3.134 27 H -0.270 1.270 28 H -0.281 1.281 29 H -0.264 1.264 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.408 0.592 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.140 0.860 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.037 0.963 49 H 0.031 0.969 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -2.723 -19.398 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 H 0.119 0.881 4 N -0.355 5.355 5 C 0.132 3.868 6 C -0.208 4.208 7 C -0.110 4.110 8 C -0.101 4.101 9 N -0.179 5.179 10 C -0.096 4.096 11 C -0.162 4.162 12 C -0.169 4.169 13 C -0.092 4.092 14 C 0.111 3.889 15 F -0.113 7.113 16 C -0.241 4.241 17 C 0.304 3.696 18 O -0.448 6.448 19 N -0.318 5.318 20 C -0.047 4.047 21 C 0.081 3.919 22 C -0.582 4.582 23 H 0.099 0.901 24 C -0.124 4.124 25 N -0.522 5.522 26 Si 0.692 3.308 27 H -0.195 1.195 28 H -0.207 1.207 29 H -0.188 1.188 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.158 0.842 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.055 0.945 49 H 0.049 0.951 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.785 -2.606 -19.107 20.796 hybrid contribution -0.260 0.415 0.054 0.493 sum 7.525 -2.191 -19.053 20.602 Atomic orbital electron populations 1.22321 0.92269 1.02693 1.05457 1.20835 0.96430 0.96920 0.83228 0.88104 1.44698 1.72017 1.12820 1.05977 1.17456 0.92745 0.90332 0.86234 1.20470 1.08251 1.00416 0.91701 1.20772 1.00593 0.91527 0.98062 1.18754 1.07667 0.92510 0.91136 1.62151 1.29305 1.25953 1.00464 1.23416 1.01819 0.94668 0.89655 1.22492 0.97751 0.99064 0.96910 1.22422 0.98241 1.01426 0.94821 1.23028 0.89896 1.00891 0.95354 1.16939 1.00727 0.78064 0.93166 1.91471 1.90376 1.32596 1.96884 1.20580 1.11285 0.94173 0.98096 1.20320 0.77488 0.86902 0.84910 1.90595 1.53421 1.15389 1.85432 1.47797 1.60415 1.13211 1.10405 1.21478 0.98128 0.97421 0.87653 1.19988 0.97445 0.76781 0.97636 1.21277 0.95960 0.94773 1.46155 0.90095 1.24851 0.94700 0.98741 0.94136 1.69874 1.12716 1.24911 1.44712 0.87007 0.80990 0.83472 0.79365 1.19485 1.20694 1.18835 0.92590 0.87300 0.92045 0.75443 0.85505 0.84898 0.89513 0.92415 0.90769 0.90594 0.91290 0.90778 0.93055 0.89528 0.84229 0.92868 0.92052 0.91286 0.94516 0.95115 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.39 37.16 0.35 -2.65 16 2 C 0.13 2.32 1.96 -69.08 -0.14 2.19 16 3 H 0.10 1.76 4.40 -51.93 -0.23 1.53 16 4 N -0.73 -11.01 5.24 -53.24 -0.28 -11.29 16 5 C 0.24 3.40 6.64 -83.68 -0.56 2.84 16 6 C -0.18 -2.24 9.89 -39.38 -0.39 -2.63 16 7 C -0.09 -1.01 8.80 -39.42 -0.35 -1.36 16 8 C 0.00 -0.02 5.46 -83.55 -0.46 -0.48 16 9 N -0.46 -5.42 5.30 -167.01 -0.89 -6.31 16 10 C 0.03 0.27 5.18 -1.91 -0.01 0.26 16 11 C -0.12 -0.89 7.06 -24.87 -0.18 -1.06 16 12 C -0.13 -1.03 6.93 -25.38 -0.18 -1.21 16 13 C 0.03 0.37 5.41 -2.76 -0.01 0.35 16 14 C 0.13 1.98 6.92 -39.28 -0.27 1.71 16 15 F -0.13 -2.12 15.42 2.25 0.03 -2.08 16 16 C -0.22 -3.30 8.83 -39.35 -0.35 -3.65 16 17 C 0.52 10.09 6.86 -10.98 -0.08 10.02 16 18 O -0.57 -11.90 15.74 5.56 0.09 -11.81 16 19 N -0.59 -11.60 2.86 -182.95 -0.52 -12.12 16 20 C 0.10 1.65 10.39 59.84 0.62 2.28 16 21 C 0.20 4.26 4.10 -5.19 -0.02 4.24 16 22 C -0.54 -13.50 7.90 -34.44 -0.27 -13.77 16 23 H 0.08 2.26 8.02 -52.49 -0.42 1.84 16 24 C 0.08 2.07 5.47 -17.83 -0.10 1.98 16 25 N -0.89 -24.74 13.96 55.43 0.77 -23.97 16 26 Si 0.87 19.19 27.47 -169.99 -4.67 14.52 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.11 2.26 5.82 -51.93 -0.30 1.96 16 32 H 0.06 1.01 7.64 -51.93 -0.40 0.61 16 33 H 0.41 6.06 7.82 -40.82 -0.32 5.74 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.18 5.94 -52.49 -0.31 0.87 16 36 H 0.09 0.69 8.13 -51.93 -0.42 0.26 16 37 H 0.06 0.47 6.60 -51.93 -0.34 0.13 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 43 H 0.09 0.99 7.46 -51.93 -0.39 0.60 16 44 H 0.14 2.21 6.04 -52.49 -0.32 1.90 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.99 7.63 -51.93 -0.40 0.59 16 47 H 0.07 1.05 7.86 -51.93 -0.41 0.65 16 48 H 0.04 0.76 6.95 -51.93 -0.36 0.40 16 49 H 0.03 0.63 5.12 -51.93 -0.27 0.36 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -28.82 392.26 -9.33 -38.14 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.41 Total: 9.95 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.37 Total: -0.94 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.91 Total: -53.69 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.67 Total: 14.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.82 -9.33 -38.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071902529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.046 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds