Wall clock time and date at job start Tue Mar 31 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47594 * 2 1 4 4 N 1.46507 * 109.46940 * 119.99856 * 2 1 3 5 5 C 1.39982 * 119.99815 * 275.00008 * 4 2 1 6 6 C 1.38856 * 119.99291 * 179.97438 * 5 4 2 7 7 C 1.38145 * 120.03878 * 179.97438 * 6 5 4 8 8 C 1.38786 * 120.02124 * 0.27782 * 7 6 5 9 9 N 1.40167 * 120.00751 * 179.72764 * 8 7 6 10 10 C 1.48530 * 110.99979 * 8.17113 * 9 8 7 11 11 C 1.54934 * 103.22981 * 159.72311 * 10 9 8 12 12 C 1.54600 * 102.91877 * 322.59040 * 11 10 9 13 13 C 1.47897 * 111.00197 * 125.57151 * 9 8 7 14 14 C 1.39036 * 119.98529 * 359.44746 * 8 7 6 15 15 F 1.35101 * 120.01929 * 180.25303 * 14 8 7 16 16 C 1.38271 * 119.96394 * 0.55264 * 14 8 7 17 17 C 1.50706 * 109.47365 * 239.99321 * 2 1 3 18 18 O 1.21275 * 120.00303 * 257.05993 * 17 2 1 19 19 N 1.34781 * 119.99591 * 77.06352 * 17 2 1 20 20 C 1.46504 * 119.99913 * 355.51134 * 19 17 2 21 21 C 1.46495 * 120.00078 * 175.51849 * 19 17 2 22 22 C 1.50700 * 109.47444 * 89.99238 * 21 19 17 23 23 H 1.07998 * 119.99744 * 0.02562 * 22 21 19 24 24 C 1.37874 * 120.00075 * 179.97438 * 22 21 19 25 25 N 1.31519 * 120.00236 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00053 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47023 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47169 * 120.00288 * 26 24 22 29 29 H 1.48497 * 109.47380 * 240.00343 * 26 24 22 30 30 H 1.08993 * 109.47043 * 307.62493 * 1 2 3 31 31 H 1.09007 * 109.46598 * 67.62076 * 1 2 3 32 32 H 1.08999 * 109.47262 * 187.61451 * 1 2 3 33 33 H 0.96996 * 119.99866 * 94.99431 * 4 2 1 34 34 H 1.08004 * 119.98471 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.99437 * 179.97438 * 7 6 5 36 36 H 1.09006 * 110.66633 * 278.15528 * 10 9 8 37 37 H 1.09000 * 110.66937 * 41.28543 * 10 9 8 38 38 H 1.08989 * 110.72938 * 204.22727 * 11 10 9 39 39 H 1.09004 * 110.72441 * 80.93758 * 11 10 9 40 40 H 1.09003 * 110.30312 * 263.04056 * 12 11 10 41 41 H 1.09001 * 110.30982 * 140.87321 * 12 11 10 42 42 H 1.09003 * 109.91503 * 333.50165 * 13 9 8 43 43 H 1.09000 * 109.92094 * 94.79994 * 13 9 8 44 44 H 1.07997 * 120.01265 * 179.70386 * 16 14 8 45 45 H 1.09001 * 109.46677 * 89.51505 * 20 19 17 46 46 H 1.08999 * 109.47057 * 209.51376 * 20 19 17 47 47 H 1.08998 * 109.47012 * 329.52011 * 20 19 17 48 48 H 1.08997 * 109.47160 * 209.99628 * 21 19 17 49 49 H 1.09004 * 109.46670 * 329.99957 * 21 19 17 50 50 H 0.96998 * 120.00143 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1520 0.0078 2.4020 6 6 2.6143 -0.6470 3.5359 7 6 2.7470 0.0414 4.7262 8 6 2.4129 1.3869 4.7912 9 7 2.5423 2.0837 6.0005 10 6 3.2313 1.2540 7.0218 11 6 3.7450 2.3012 8.0416 12 6 4.1653 3.4845 7.1399 13 6 3.3797 3.2908 5.8297 14 6 1.9553 2.0449 3.6551 15 9 1.6347 3.3559 3.7163 16 6 1.8227 1.3553 2.4640 17 6 2.0324 -0.7106 -1.2304 18 8 2.4563 -1.8437 -1.1457 19 7 2.0107 -0.0867 -2.4249 20 6 1.4089 1.2436 -2.5457 21 6 2.5886 -0.7388 -3.6026 22 6 1.5291 -1.5575 -4.2941 23 1 0.5255 -1.5885 -3.8964 24 6 1.8407 -2.2660 -5.4351 25 7 3.0628 -2.2278 -5.9197 26 14 0.5272 -3.2802 -6.2928 27 1 -0.7549 -3.1565 -5.5536 28 1 0.3474 -2.7849 -7.6811 29 1 0.9447 -4.7049 -6.3256 30 1 -0.3633 0.6273 0.8139 31 1 -0.3633 0.3913 -0.9504 32 1 -0.3634 -1.0186 0.1362 33 1 2.2489 -1.6318 1.1527 34 1 2.8710 -1.6950 3.4870 35 1 3.1063 -0.4687 5.6077 36 1 2.5304 0.5669 7.4959 37 1 4.0642 0.7094 6.5770 38 1 4.6010 1.9140 8.5940 39 1 2.9479 2.5995 8.7227 40 1 5.2375 3.4505 6.9466 41 1 3.8941 4.4312 7.6072 42 1 4.0715 3.1483 4.9995 43 1 2.7468 4.1586 5.6444 44 1 1.4628 1.8644 1.5822 45 1 2.1675 2.0038 -2.3589 46 1 1.0070 1.3707 -3.5508 47 1 0.6048 1.3461 -1.8170 48 1 2.9674 0.0190 -4.2883 49 1 3.4061 -1.3899 -3.2927 50 1 3.2821 -2.7265 -6.7222 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071902530.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:20 Heat of formation + Delta-G solvation = -31.673707 kcal Electronic energy + Delta-G solvation = -30771.000579 eV Core-core repulsion = 26520.008540 eV Total energy + Delta-G solvation = -4250.992039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.89650 -40.38256 -39.60503 -38.24513 -35.54588 -34.95407 -32.90333 -32.36861 -30.94097 -30.41814 -29.18734 -27.80006 -27.10699 -26.10026 -24.25982 -23.50084 -22.75026 -22.02851 -21.02858 -20.60982 -18.85841 -18.19514 -17.26636 -16.63577 -16.56421 -16.40545 -16.33157 -15.66481 -15.54800 -15.10770 -14.81786 -14.68311 -14.55980 -14.15538 -13.98649 -13.74529 -13.71240 -13.23505 -13.11386 -13.00208 -12.69668 -12.47160 -12.39650 -12.13372 -12.11422 -11.97856 -11.68111 -11.63037 -11.56383 -11.44888 -11.24525 -11.13979 -10.92699 -10.88549 -10.65748 -10.36930 -10.21672 -9.67977 -9.16153 -9.01702 -8.84922 -8.49448 -7.77569 -7.19448 -6.10050 -4.14951 1.11203 1.32105 3.11585 3.24957 3.26125 3.34158 3.38702 3.44348 3.71879 3.92066 4.21800 4.23933 4.33106 4.39509 4.61514 4.63579 4.81391 4.90242 4.99020 5.04710 5.10994 5.15422 5.19596 5.24626 5.26487 5.39266 5.41682 5.44453 5.46122 5.57714 5.65504 5.67095 5.70008 5.77486 5.81429 5.83399 5.91418 5.97693 6.06995 6.10635 6.26809 6.46673 6.61465 6.87991 7.01275 7.25173 7.33675 7.42428 7.74238 7.85616 8.15702 8.26454 8.78413 8.93790 9.50234 10.98137 Molecular weight = 349.19amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.001966 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.680209 B =14240.016641 C =14525.173524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 H 0.095 0.905 4 N -0.721 5.721 5 C 0.237 3.763 6 C -0.182 4.182 7 C -0.087 4.087 8 C 0.000 4.000 9 N -0.462 5.462 10 C 0.031 3.969 11 C -0.124 4.124 12 C -0.131 4.131 13 C 0.035 3.965 14 C 0.131 3.869 15 F -0.136 7.136 16 C -0.220 4.220 17 C 0.502 3.498 18 O -0.536 6.536 19 N -0.596 5.596 20 C 0.070 3.930 21 C 0.245 3.755 22 C -0.526 4.526 23 H 0.058 0.942 24 C 0.060 3.940 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.136 0.864 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.034 0.966 49 H 0.043 0.957 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 11.434 25.021 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.019 3.981 3 H 0.113 0.887 4 N -0.351 5.351 5 C 0.132 3.868 6 C -0.205 4.205 7 C -0.108 4.108 8 C -0.100 4.100 9 N -0.179 5.179 10 C -0.096 4.096 11 C -0.162 4.162 12 C -0.170 4.170 13 C -0.091 4.091 14 C 0.109 3.891 15 F -0.115 7.115 16 C -0.244 4.244 17 C 0.287 3.713 18 O -0.413 6.413 19 N -0.327 5.327 20 C -0.073 4.073 21 C 0.126 3.874 22 C -0.565 4.565 23 H 0.077 0.923 24 C -0.142 4.142 25 N -0.533 5.533 26 Si 0.727 3.273 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.154 0.846 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.473 11.096 24.897 27.262 hybrid contribution -0.032 -0.831 -1.032 1.325 sum -0.505 10.265 23.865 25.984 Atomic orbital electron populations 1.22310 0.93621 1.03664 1.02965 1.20830 0.95274 0.97074 0.84956 0.88677 1.44620 1.71781 1.13143 1.05598 1.17474 0.92828 0.90321 0.86220 1.20530 1.07757 1.00644 0.91580 1.20817 0.99206 0.92731 0.98040 1.18775 1.07552 0.93906 0.89728 1.62152 1.44367 1.05910 1.05462 1.23428 0.97447 0.96124 0.92615 1.22496 1.01082 0.95204 0.97458 1.22427 0.99867 0.99376 0.95283 1.23023 0.94975 0.93685 0.97422 1.16910 1.01000 0.78053 0.93148 1.91459 1.90368 1.32652 1.96984 1.20446 1.12121 0.94015 0.97788 1.20211 0.79827 0.86792 0.84432 1.90663 1.47436 1.17764 1.85448 1.48111 1.57474 1.17567 1.09590 1.21904 0.97494 0.84363 1.03575 1.19338 0.94535 0.92946 0.80535 1.21437 0.96652 1.28878 1.09483 0.92346 1.24947 0.95640 0.96509 0.97081 1.69939 1.18456 1.42235 1.22703 0.86430 0.81682 0.80084 0.79146 1.19794 1.20936 1.20858 0.91481 0.90421 0.91345 0.74853 0.85298 0.84786 0.89437 0.92346 0.90697 0.90563 0.91252 0.90753 0.93104 0.89562 0.84598 0.93491 0.90317 0.91682 0.94758 0.93924 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.06 37.16 0.34 -1.77 16 2 C 0.13 1.84 1.86 -69.08 -0.13 1.71 16 3 H 0.10 1.21 5.91 -51.93 -0.31 0.90 16 4 N -0.72 -9.95 5.22 -53.23 -0.28 -10.22 16 5 C 0.24 2.96 6.64 -83.68 -0.56 2.40 16 6 C -0.18 -2.01 9.89 -39.39 -0.39 -2.40 16 7 C -0.09 -0.89 8.80 -39.41 -0.35 -1.24 16 8 C 0.00 0.00 5.47 -83.55 -0.46 -0.46 16 9 N -0.46 -4.73 5.31 -167.01 -0.89 -5.62 16 10 C 0.03 0.23 5.17 -1.90 -0.01 0.22 16 11 C -0.12 -0.76 7.06 -24.87 -0.18 -0.94 16 12 C -0.13 -0.88 6.93 -25.37 -0.18 -1.05 16 13 C 0.03 0.32 5.39 -2.76 -0.01 0.31 16 14 C 0.13 1.62 6.91 -39.27 -0.27 1.35 16 15 F -0.14 -1.73 15.39 2.25 0.03 -1.70 16 16 C -0.22 -2.68 8.89 -39.34 -0.35 -3.03 16 17 C 0.50 9.91 6.95 -10.98 -0.08 9.83 16 18 O -0.54 -12.78 15.51 5.56 0.09 -12.69 16 19 N -0.60 -12.09 2.86 -182.95 -0.52 -12.61 16 20 C 0.07 1.05 9.82 59.85 0.59 1.64 16 21 C 0.25 6.27 5.12 -5.20 -0.03 6.24 16 22 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 23 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 26 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 30 H 0.07 0.72 7.66 -51.93 -0.40 0.33 16 31 H 0.08 0.95 5.79 -51.92 -0.30 0.65 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.41 6.05 7.74 -40.82 -0.32 5.73 16 34 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.13 1.07 5.95 -52.49 -0.31 0.75 16 36 H 0.09 0.61 8.13 -51.93 -0.42 0.18 16 37 H 0.06 0.42 6.60 -51.93 -0.34 0.08 16 38 H 0.07 0.35 8.14 -51.94 -0.42 -0.07 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 43 H 0.09 0.83 7.45 -51.93 -0.39 0.44 16 44 H 0.14 1.54 6.00 -52.49 -0.31 1.22 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.06 0.78 4.49 -51.93 -0.23 0.55 16 48 H 0.03 0.88 8.07 -51.93 -0.42 0.47 16 49 H 0.04 1.23 7.49 -51.93 -0.39 0.84 16 50 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -32.55 397.27 -9.80 -42.34 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.46 Total: 3.96 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.47 Total: -0.53 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.95 Total: -53.98 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.55 -9.80 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071902530.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.671 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds