Wall clock time and date at job start Tue Mar 31 2020 05:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 C 1.53000 * 109.47302 * 240.00141 * 2 1 3 5 5 C 1.50703 * 109.46955 * 59.99758 * 4 2 1 6 6 H 1.07999 * 119.99787 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00286 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99812 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47020 * 90.00180 * 9 7 5 11 11 H 1.48502 * 109.47285 * 210.00272 * 9 7 5 12 12 H 1.48496 * 109.47451 * 330.00125 * 9 7 5 13 13 C 1.52999 * 109.47496 * 120.00023 * 2 1 3 14 14 N 1.46903 * 109.46958 * 300.00060 * 13 2 1 15 15 C 1.46899 * 110.99976 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47411 * 180.02562 * 15 14 13 17 17 N 1.46894 * 109.47428 * 180.02562 * 16 15 14 18 18 C 1.46963 * 110.99746 * 293.80155 * 17 16 15 19 19 C 1.53055 * 109.36395 * 176.81271 * 18 17 16 20 20 N 1.46956 * 109.36416 * 58.39725 * 19 18 17 21 21 C 1.38403 * 110.99896 * 176.80821 * 20 19 18 22 22 N 1.32497 * 119.21450 * 123.52849 * 21 20 19 23 23 C 1.32282 * 120.74012 * 179.71762 * 22 21 20 24 24 C 1.38602 * 119.19653 * 0.55125 * 23 22 21 25 25 C 1.38609 * 118.55661 * 359.72499 * 24 23 22 26 26 N 1.32279 * 119.19938 * 0.02562 * 25 24 23 27 27 C 1.46950 * 110.88187 * 300.68087 * 20 19 18 28 28 C 1.46956 * 111.00196 * 170.00276 * 17 16 15 29 29 H 1.09009 * 109.47065 * 299.99811 * 1 2 3 30 30 H 1.09000 * 109.47729 * 59.99700 * 1 2 3 31 31 H 1.09006 * 109.47449 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46849 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46972 * 299.99925 * 3 2 1 34 34 H 1.09000 * 109.47019 * 60.00159 * 3 2 1 35 35 H 1.08990 * 109.47395 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.46822 * 300.00188 * 4 2 1 37 37 H 0.96998 * 120.00335 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47578 * 179.97438 * 13 2 1 39 39 H 1.08997 * 109.46835 * 59.99686 * 13 2 1 40 40 H 1.00894 * 111.00080 * 303.95084 * 14 13 2 41 41 H 1.09004 * 109.46950 * 59.99932 * 15 14 13 42 42 H 1.09004 * 109.47505 * 300.00334 * 15 14 13 43 43 H 1.09002 * 109.46684 * 60.00021 * 16 15 14 44 44 H 1.09004 * 109.46977 * 300.00557 * 16 15 14 45 45 H 1.09003 * 109.48613 * 296.77787 * 18 17 16 46 46 H 1.08994 * 109.49091 * 56.84241 * 18 17 16 47 47 H 1.08994 * 109.48838 * 298.43235 * 19 18 17 48 48 H 1.09003 * 109.50210 * 178.37531 * 19 18 17 49 49 H 1.07998 * 120.39690 * 180.25606 * 23 22 21 50 50 H 1.07992 * 120.71979 * 179.70968 * 24 23 22 51 51 H 1.07996 * 120.39655 * 179.97438 * 25 24 23 52 52 H 1.09003 * 109.48721 * 299.35316 * 27 20 19 53 53 H 1.09002 * 109.51007 * 179.30022 * 27 20 19 54 54 H 1.09000 * 109.48237 * 303.15282 * 28 17 16 55 55 H 1.08993 * 109.48945 * 63.19329 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8670 -2.3805 7 6 1.8703 -0.4821 -3.7320 8 7 2.6256 -1.5519 -3.8527 9 14 1.2469 0.3981 -5.2571 10 1 2.2249 1.4397 -5.6619 11 1 1.0815 -0.5813 -6.3611 12 1 -0.0611 1.0356 -4.9610 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 6 1.4914 0.0526 4.8956 17 7 1.9625 -0.6134 6.1172 18 6 1.3727 -1.9532 6.2473 19 6 1.9481 -2.6427 7.4867 20 7 1.6623 -1.8268 8.6751 21 6 2.1060 -2.4545 9.8260 22 7 2.9571 -1.8219 10.6205 23 6 3.3963 -2.3912 11.7308 24 6 2.9645 -3.6684 12.0524 25 6 2.0785 -4.3034 11.1962 26 7 1.6743 -3.6758 10.1042 27 6 2.2520 -0.4872 8.5449 28 6 1.6766 0.2024 7.3056 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 -0.7208 -1.2495 36 1 1.6766 -1.7488 -1.2492 37 1 2.8593 -1.8837 -4.7337 38 1 3.1300 -0.7216 1.2490 39 1 1.6766 -1.7489 1.2492 40 1 1.8198 0.9435 2.4402 41 1 3.1108 -0.6953 3.6872 42 1 1.6572 -1.7226 3.6869 43 1 0.4015 0.0524 4.8784 44 1 1.8548 1.0802 4.8792 45 1 0.2909 -1.8660 6.3490 46 1 1.6087 -2.5421 5.3611 47 1 3.0263 -2.7544 7.3731 48 1 1.4908 -3.6255 7.6017 49 1 4.0868 -1.8689 12.3765 50 1 3.3111 -4.1582 12.9503 51 1 1.7232 -5.2989 11.4176 52 1 3.3338 -0.5744 8.4432 53 1 2.0164 0.1020 9.4312 54 1 2.1342 1.1850 7.1907 55 1 0.5984 0.3144 7.4190 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921701.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:39 Heat of formation + Delta-G solvation = 48.132315 kcal Electronic energy + Delta-G solvation = -30032.880148 eV Core-core repulsion = 26104.246388 eV Total energy + Delta-G solvation = -3928.633761 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.24872 -40.26174 -39.18212 -37.25437 -35.51631 -34.77305 -34.15401 -32.24822 -32.09567 -30.08282 -28.83576 -27.87092 -27.30941 -26.08138 -25.79210 -24.42180 -24.14936 -23.66227 -22.32040 -21.02388 -19.49229 -19.00662 -18.44536 -18.32038 -17.07309 -16.87449 -16.66174 -16.51791 -16.31547 -16.16195 -15.65704 -15.55593 -15.44166 -15.15718 -15.11736 -14.74111 -14.57833 -14.35330 -14.14722 -13.89784 -13.84453 -13.54615 -13.15333 -12.93758 -12.70077 -12.67265 -12.58835 -12.42503 -12.27314 -12.23121 -12.13503 -12.05582 -11.94774 -11.86114 -11.82824 -11.64353 -11.35256 -11.19157 -10.84383 -10.71455 -10.49511 -10.18803 -9.50446 -9.36511 -9.28278 -8.12983 -6.20062 -0.03469 0.17772 1.41685 1.42360 1.53060 2.09728 2.44503 2.66338 2.78940 3.19145 3.20933 3.48141 3.61176 3.80949 3.82592 3.86280 4.03010 4.15100 4.15879 4.19628 4.26918 4.28986 4.33134 4.36607 4.39185 4.43108 4.51187 4.64402 4.74912 4.77780 4.80078 4.81589 4.84887 4.89648 4.92403 4.97059 4.99216 5.08259 5.10506 5.23473 5.24120 5.30726 5.50550 5.53480 5.55586 5.60447 5.66601 5.70572 5.89038 5.92747 5.94317 6.01312 6.12164 6.25008 6.38117 6.56727 6.95210 7.13511 7.47297 8.99349 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.031930 B = 0.001458 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.717758 B =19199.625816 C =19614.171612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.057 4.057 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.085 3.915 14 N -0.681 5.681 15 C 0.066 3.934 16 C 0.070 3.930 17 N -0.547 5.547 18 C 0.058 3.942 19 C 0.081 3.919 20 N -0.473 5.473 21 C 0.471 3.529 22 N -0.573 5.573 23 C 0.159 3.841 24 C -0.247 4.247 25 C 0.160 3.840 26 N -0.560 5.560 27 C 0.084 3.916 28 C 0.059 3.941 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.069 0.931 35 H -0.017 1.017 36 H -0.017 1.017 37 H 0.259 0.741 38 H 0.016 0.984 39 H 0.054 0.946 40 H 0.345 0.655 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.092 0.908 47 H 0.042 0.958 48 H 0.094 0.906 49 H 0.198 0.802 50 H 0.184 0.816 51 H 0.199 0.801 52 H 0.051 0.949 53 H 0.091 0.909 54 H 0.103 0.897 55 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -0.633 36.054 36.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.044 4.044 14 N -0.314 5.314 15 C -0.064 4.064 16 C -0.058 4.058 17 N -0.272 5.272 18 C -0.070 4.070 19 C -0.046 4.046 20 N -0.193 5.193 21 C 0.115 3.885 22 N -0.293 5.293 23 C -0.007 4.007 24 C -0.270 4.270 25 C -0.006 4.006 26 N -0.279 5.279 27 C -0.044 4.044 28 C -0.069 4.069 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.165 0.835 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.110 0.890 47 H 0.061 0.939 48 H 0.113 0.887 49 H 0.215 0.785 50 H 0.202 0.798 51 H 0.216 0.784 52 H 0.070 0.930 53 H 0.110 0.890 54 H 0.121 0.879 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.467 -0.575 35.030 35.037 hybrid contribution 1.014 -0.288 -0.470 1.154 sum 0.547 -0.863 34.559 34.575 Atomic orbital electron populations 1.21495 0.94250 1.00027 1.00548 1.20510 0.96341 0.95728 0.93114 1.21681 0.99425 0.95497 1.01298 1.19010 0.93933 0.94089 0.92785 1.21633 1.30197 1.11951 0.91450 0.91530 1.25929 0.95737 0.95895 1.02608 1.70112 1.38968 1.24891 1.23993 0.85562 0.79106 0.78200 0.78886 1.20058 1.21322 1.18690 1.21774 0.95748 0.97430 0.89469 1.60429 1.63539 1.06711 1.00716 1.21855 0.97296 0.98380 0.88831 1.21892 0.98172 0.98076 0.87621 1.62117 1.59356 1.03067 1.02698 1.22209 0.97188 0.90477 0.97135 1.22155 0.99385 0.96536 0.86487 1.58645 1.54947 1.04966 1.00761 1.21182 0.87327 0.87208 0.92786 1.68399 1.12899 1.39572 1.08439 1.23741 0.93820 0.92527 0.90577 1.23149 1.02062 0.97547 1.04240 1.23760 0.90151 1.00099 0.86639 1.68027 1.27504 1.09715 1.22649 1.22019 0.97495 0.86396 0.98442 1.22252 0.99452 0.97157 0.88052 0.91276 0.94312 0.95237 0.94515 0.93449 0.91188 0.99828 0.99842 0.93210 0.96542 0.92714 0.83500 0.95250 0.91720 0.93884 0.89636 0.93779 0.88976 0.93924 0.88733 0.78478 0.79823 0.78439 0.93048 0.89040 0.87919 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 2 C -0.06 -2.25 0.60 -52.18 -0.03 -2.28 16 3 C -0.12 -4.35 7.89 71.98 0.57 -3.78 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.66 7.65 25.60 0.20 -28.46 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.09 2.93 4.65 86.30 0.40 3.33 16 14 N -0.68 -18.25 5.71 -513.87 -2.94 -21.18 16 15 C 0.07 1.52 5.62 86.30 0.48 2.01 16 16 C 0.07 1.34 5.22 86.31 0.45 1.79 16 17 N -0.55 -10.29 4.71 -895.70 -4.22 -14.51 16 18 C 0.06 1.11 5.41 86.31 0.47 1.57 16 19 C 0.08 1.59 5.46 86.31 0.47 2.07 16 20 N -0.47 -9.83 4.77 -708.33 -3.38 -13.21 16 21 C 0.47 9.92 7.17 261.49 1.88 11.80 16 22 N -0.57 -10.56 8.70 -197.99 -1.72 -12.28 16 23 C 0.16 1.74 11.30 84.71 0.96 2.69 16 24 C -0.25 -1.85 10.16 22.45 0.23 -1.63 16 25 C 0.16 1.84 11.30 84.71 0.96 2.79 16 26 N -0.56 -11.00 9.72 -197.99 -1.92 -12.92 16 27 C 0.08 1.52 4.76 86.31 0.41 1.93 16 28 C 0.06 0.97 5.61 86.31 0.48 1.45 16 29 H 0.07 2.25 7.60 -2.38 -0.02 2.24 16 30 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 34 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 35 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.35 8.44 6.77 -89.70 -0.61 7.83 16 41 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.06 1.57 6.49 -2.38 -0.02 1.55 16 43 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 44 H 0.09 1.45 8.03 -2.38 -0.02 1.43 16 45 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 46 H 0.09 1.74 6.34 -2.39 -0.02 1.72 16 47 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 1.89 7.64 -2.39 -0.02 1.87 16 49 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 50 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 51 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 52 H 0.05 1.03 8.03 -2.39 -0.02 1.02 16 53 H 0.09 1.61 7.81 -2.39 -0.02 1.59 16 54 H 0.10 1.37 8.07 -2.39 -0.02 1.35 16 55 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -71.27 422.40 -2.53 -73.81 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.25 Total: 16.93 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 9.08 Total: -5.82 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -13.89 Total: -131.66 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.27 -2.53 -73.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921701.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.937 kcal (2) G-P(sol) polarization free energy of solvation -71.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds