Wall clock time and date at job start Tue Mar 31 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99778 * 2 1 4 4 H 1.48497 * 109.47185 * 269.99938 * 3 2 1 5 5 H 1.48508 * 109.46978 * 29.99973 * 3 2 1 6 6 H 1.48503 * 109.46815 * 149.99924 * 3 2 1 7 7 C 1.37874 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99550 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.46823 * 179.97438 * 9 7 2 11 11 C 1.46494 * 119.99906 * 84.99660 * 10 9 7 12 12 C 1.52999 * 109.47391 * 274.99873 * 11 10 9 13 13 C 1.53786 * 113.61361 * 184.99937 * 12 11 10 14 14 C 1.53781 * 87.17350 * 220.06273 * 13 12 11 15 15 C 1.53782 * 87.08260 * 25.39213 * 14 13 12 16 16 S 1.65596 * 119.99916 * 264.99878 * 10 9 7 17 17 O 1.42099 * 106.40250 * 23.54243 * 16 10 9 18 18 O 1.42097 * 106.40382 * 156.45956 * 16 10 9 19 19 C 1.76194 * 107.21930 * 270.00203 * 16 10 9 20 20 C 1.34225 * 126.57043 * 114.68627 * 19 16 10 21 21 N 1.36914 * 109.91777 * 179.83486 * 20 19 16 22 22 H 0.97003 * 124.99113 * 180.18738 * 21 20 19 23 23 C 1.37422 * 110.02149 * 0.44558 * 21 20 19 24 24 N 1.32652 * 133.19348 * 179.73522 * 23 21 20 25 25 C 1.31593 * 121.67519 * 180.02562 * 24 23 21 26 26 C 1.38662 * 121.57892 * 0.02562 * 25 24 23 27 27 C 1.38195 * 119.41323 * 359.97438 * 26 25 24 28 28 C 1.39699 * 118.04193 * 0.02562 * 27 26 25 29 29 H 0.96995 * 119.99890 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46869 * 60.00174 * 9 7 2 31 31 H 1.09002 * 109.46871 * 299.99772 * 9 7 2 32 32 H 1.09002 * 109.47287 * 154.99692 * 11 10 9 33 33 H 1.09004 * 109.47020 * 34.99973 * 11 10 9 34 34 H 1.08993 * 112.90825 * 316.25137 * 12 11 10 35 35 H 1.09002 * 113.61357 * 105.47190 * 13 12 11 36 36 H 1.09002 * 113.61608 * 334.65352 * 13 12 11 37 37 H 1.09001 * 113.61695 * 139.93969 * 14 13 12 38 38 H 1.08997 * 113.61223 * 270.84552 * 14 13 12 39 39 H 1.08997 * 113.61668 * 89.11298 * 15 14 13 40 40 H 1.08998 * 113.61674 * 219.93807 * 15 14 13 41 41 H 1.08005 * 125.04374 * 359.97438 * 20 19 16 42 42 H 1.07995 * 119.20892 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.29146 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.98020 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 4.1403 -3.3024 -1.2640 12 6 2.7981 -3.9319 -1.6420 13 6 2.8660 -4.8219 -2.8944 14 6 1.5072 -4.2260 -3.2984 15 6 1.8838 -2.9968 -2.4545 16 16 4.3933 -3.3144 1.4286 17 8 3.6675 -2.6360 2.4445 18 8 4.2869 -4.7128 1.1994 19 6 6.0979 -2.9883 1.7326 20 6 6.6058 -2.2627 2.7411 21 7 7.9718 -2.2332 2.6527 22 1 8.5595 -1.7726 3.2720 23 6 8.3877 -2.9471 1.5546 24 7 9.5826 -3.2099 1.0418 25 6 9.7228 -3.9361 -0.0466 26 6 8.6277 -4.4637 -0.7137 27 6 7.3566 -4.2241 -0.2271 28 6 7.2311 -3.4507 0.9295 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6807 0.8905 31 1 3.8752 -0.6795 -0.8895 32 1 4.8901 -4.0855 -1.1514 33 1 4.4513 -2.6117 -2.0479 34 1 2.2983 -4.4050 -0.7968 35 1 2.8269 -5.8888 -2.6745 36 1 3.6773 -4.5591 -3.5733 37 1 1.4227 -4.0145 -4.3644 38 1 0.6538 -4.7796 -2.9068 39 1 2.4269 -2.2339 -3.0123 40 1 1.0515 -2.5895 -1.8806 41 1 6.0235 -1.7763 3.5098 42 1 10.7147 -4.1257 -0.4295 43 1 8.7668 -5.0566 -1.6055 44 1 6.4859 -4.6224 -0.7267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072285264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:05 Heat of formation + Delta-G solvation = 28.307818 kcal Electronic energy + Delta-G solvation = -29756.509852 eV Core-core repulsion = 25802.665795 eV Total energy + Delta-G solvation = -3953.844057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71135 -38.47812 -38.05488 -36.55853 -35.23607 -35.12988 -33.19183 -32.36509 -30.37998 -29.51003 -28.81316 -26.41436 -24.88939 -23.98072 -22.83653 -22.42828 -22.07544 -21.64805 -18.79057 -18.78007 -17.92178 -17.06801 -17.02960 -16.76018 -16.16374 -15.75949 -15.41667 -15.27446 -14.82071 -14.71433 -14.32208 -14.11100 -13.58571 -13.57113 -13.19182 -12.74880 -12.55902 -12.45214 -12.32495 -12.01614 -11.81000 -11.78475 -11.57571 -11.45927 -11.30158 -11.03866 -11.01459 -10.74337 -10.60750 -10.43652 -10.23830 -9.99130 -9.75006 -9.60151 -9.47092 -9.25299 -8.75033 -8.60067 -8.53814 -8.03399 -6.03624 -4.00187 0.70415 1.01769 1.15420 2.05319 2.48107 3.26771 3.34577 3.35595 3.62385 3.73945 4.24529 4.29867 4.41383 4.44073 4.65125 4.75457 4.86945 5.05869 5.16896 5.17489 5.25145 5.27061 5.32269 5.40325 5.50443 5.60334 5.75058 5.91778 6.01562 6.05497 6.09641 6.10461 6.16093 6.31250 6.36032 6.46698 6.54147 6.62348 6.74987 6.87691 6.96741 7.10251 7.14035 7.25451 7.43739 7.62908 7.76160 8.54258 9.03319 9.56262 11.09314 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.004857 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.067482 B = 5763.864117 C = 7117.537789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.865 3.135 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.087 0.913 9 C 0.227 3.773 10 N -0.974 5.974 11 C 0.145 3.855 12 C -0.116 4.116 13 C -0.138 4.138 14 C -0.149 4.149 15 C -0.118 4.118 16 S 2.710 3.290 17 O -0.947 6.947 18 O -0.967 6.967 19 C -0.745 4.745 20 C 0.201 3.799 21 N -0.573 5.573 22 H 0.424 0.576 23 C 0.278 3.722 24 N -0.495 5.495 25 C 0.130 3.870 26 C -0.188 4.188 27 C -0.039 4.039 28 C -0.080 4.080 29 H 0.263 0.737 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.201 0.799 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.541 -6.764 -1.786 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.127 4.127 3 Si 0.692 3.308 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.105 0.895 9 C 0.104 3.896 10 N -0.813 5.813 11 C 0.019 3.981 12 C -0.136 4.136 13 C -0.176 4.176 14 C -0.187 4.187 15 C -0.155 4.155 16 S 2.796 3.204 17 O -0.937 6.937 18 O -0.957 6.957 19 C -0.836 4.836 20 C 0.067 3.933 21 N -0.178 5.178 22 H 0.263 0.737 23 C 0.045 3.955 24 N -0.208 5.208 25 C -0.035 4.035 26 C -0.209 4.209 27 C -0.065 4.065 28 C -0.087 4.087 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.218 0.782 42 H 0.180 0.820 43 H 0.160 0.840 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 16.702 -6.664 -0.699 17.996 hybrid contribution 0.675 1.278 -0.213 1.461 sum 17.376 -5.386 -0.912 18.215 Atomic orbital electron populations 1.69877 1.06000 1.26717 1.50773 1.24795 0.94634 0.98434 0.94860 0.87042 0.80579 0.84751 0.78432 1.20281 1.21115 1.19139 1.21392 0.88888 0.95060 1.50361 0.89520 1.19483 0.96365 0.76623 0.97172 1.57187 1.78169 1.25735 1.20162 1.21216 0.96468 0.94377 0.86076 1.22892 0.96730 0.97216 0.96768 1.22930 0.97880 0.98820 0.97959 1.22867 0.96880 0.99442 0.99461 1.22960 1.00739 0.94855 0.96951 1.01514 0.72312 0.73294 0.73303 1.93594 1.68467 1.75147 1.56487 1.93523 1.86206 1.30428 1.85593 1.32659 1.24513 1.18850 1.07602 1.21984 0.81530 0.92845 0.96897 1.41875 1.07039 1.45147 1.23709 0.73739 1.18424 0.90292 0.96506 0.90252 1.66477 1.23694 1.17040 1.13541 1.22480 0.99310 0.92244 0.89422 1.21911 0.92657 1.03727 1.02605 1.21270 0.98656 0.93763 0.92789 1.19036 0.91973 1.00949 0.96745 0.92699 0.94982 0.95437 0.91840 0.90806 0.89180 0.92139 0.90711 0.92480 0.90840 0.90907 0.88890 0.78217 0.81999 0.83956 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.86 20.38 27.47 -169.99 -4.67 15.71 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -13.54 7.81 -34.44 -0.27 -13.81 16 8 H 0.09 2.46 6.46 -52.49 -0.34 2.12 16 9 C 0.23 5.02 4.19 -5.19 -0.02 5.00 16 10 N -0.97 -18.76 2.80 -115.66 -0.32 -19.08 16 11 C 0.14 2.38 5.21 -4.05 -0.02 2.36 16 12 C -0.12 -2.00 3.36 -89.71 -0.30 -2.30 16 13 C -0.14 -1.93 7.64 -25.92 -0.20 -2.12 16 14 C -0.15 -2.24 8.08 -25.92 -0.21 -2.45 16 15 C -0.12 -2.14 6.26 -25.82 -0.16 -2.30 16 16 S 2.71 51.70 5.77 -107.50 -0.62 51.08 16 17 O -0.95 -20.85 16.73 -57.17 -0.96 -21.80 16 18 O -0.97 -19.50 16.99 -57.17 -0.97 -20.47 16 19 C -0.75 -11.77 6.38 -37.72 -0.24 -12.01 16 20 C 0.20 2.58 11.47 -16.70 -0.19 2.38 16 21 N -0.57 -6.57 6.05 -12.14 -0.07 -6.65 16 22 H 0.42 3.31 8.96 -40.82 -0.37 2.94 16 23 C 0.28 3.89 8.43 -155.69 -1.31 2.57 16 24 N -0.49 -6.47 10.39 -12.27 -0.13 -6.60 16 25 C 0.13 1.36 11.15 -17.50 -0.20 1.16 16 26 C -0.19 -1.91 10.10 -39.44 -0.40 -2.31 16 27 C -0.04 -0.50 10.20 -39.05 -0.40 -0.90 16 28 C -0.08 -1.21 6.38 -105.11 -0.67 -1.88 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.72 6.67 -51.93 -0.35 0.37 16 31 H 0.03 0.58 7.43 -51.93 -0.39 0.20 16 32 H 0.06 0.90 5.09 -51.93 -0.26 0.64 16 33 H 0.07 1.11 7.71 -51.93 -0.40 0.71 16 34 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.30 7.90 -51.93 -0.41 0.89 16 40 H 0.09 2.06 6.43 -51.93 -0.33 1.72 16 41 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.14 1.74 5.58 -52.49 -0.29 1.44 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -34.58 368.39 -11.79 -46.37 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.69 Total: 5.95 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -4.69 Total: -24.67 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.25 Total: -57.72 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.93 Total: -42.27 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: 51.70 SS G_CDS: -0.62 Total: 51.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.58 -11.79 -46.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072285264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.678 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds