Wall clock time and date at job start Tue Mar 31 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99778 * 2 1 4 4 H 1.48497 * 109.47185 * 269.99938 * 3 2 1 5 5 H 1.48508 * 109.46978 * 29.99973 * 3 2 1 6 6 H 1.48503 * 109.46815 * 149.99924 * 3 2 1 7 7 C 1.37874 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99550 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.46823 * 179.97438 * 9 7 2 11 11 C 1.46494 * 119.99906 * 84.99660 * 10 9 7 12 12 C 1.52999 * 109.47391 * 274.99873 * 11 10 9 13 13 C 1.53786 * 113.61361 * 184.99937 * 12 11 10 14 14 C 1.53781 * 87.17350 * 220.06273 * 13 12 11 15 15 C 1.53782 * 87.08260 * 25.39213 * 14 13 12 16 16 S 1.65596 * 119.99916 * 264.99878 * 10 9 7 17 17 O 1.42099 * 106.40250 * 23.54243 * 16 10 9 18 18 O 1.42097 * 106.40382 * 156.45956 * 16 10 9 19 19 C 1.76194 * 107.21930 * 270.00203 * 16 10 9 20 20 C 1.34225 * 126.57043 * 114.68627 * 19 16 10 21 21 N 1.36914 * 109.91777 * 179.83486 * 20 19 16 22 22 H 0.97003 * 124.99113 * 180.18738 * 21 20 19 23 23 C 1.37422 * 110.02149 * 0.44558 * 21 20 19 24 24 N 1.32652 * 133.19348 * 179.73522 * 23 21 20 25 25 C 1.31593 * 121.67519 * 180.02562 * 24 23 21 26 26 C 1.38662 * 121.57892 * 0.02562 * 25 24 23 27 27 C 1.38195 * 119.41323 * 359.97438 * 26 25 24 28 28 C 1.39699 * 118.04193 * 0.02562 * 27 26 25 29 29 H 0.96995 * 119.99890 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46869 * 60.00174 * 9 7 2 31 31 H 1.09002 * 109.46871 * 299.99772 * 9 7 2 32 32 H 1.09002 * 109.47287 * 154.99692 * 11 10 9 33 33 H 1.09004 * 109.47020 * 34.99973 * 11 10 9 34 34 H 1.08993 * 112.90825 * 316.25137 * 12 11 10 35 35 H 1.09002 * 113.61357 * 105.47190 * 13 12 11 36 36 H 1.09002 * 113.61608 * 334.65352 * 13 12 11 37 37 H 1.09001 * 113.61695 * 139.93969 * 14 13 12 38 38 H 1.08997 * 113.61223 * 270.84552 * 14 13 12 39 39 H 1.08997 * 113.61668 * 89.11298 * 15 14 13 40 40 H 1.08998 * 113.61674 * 219.93807 * 15 14 13 41 41 H 1.08005 * 125.04374 * 359.97438 * 20 19 16 42 42 H 1.07995 * 119.20892 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.29146 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.98020 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 4.1403 -3.3024 -1.2640 12 6 2.7981 -3.9319 -1.6420 13 6 2.8660 -4.8219 -2.8944 14 6 1.5072 -4.2260 -3.2984 15 6 1.8838 -2.9968 -2.4545 16 16 4.3933 -3.3144 1.4286 17 8 3.6675 -2.6360 2.4445 18 8 4.2869 -4.7128 1.1994 19 6 6.0979 -2.9883 1.7326 20 6 6.6058 -2.2627 2.7411 21 7 7.9718 -2.2332 2.6527 22 1 8.5595 -1.7726 3.2720 23 6 8.3877 -2.9471 1.5546 24 7 9.5826 -3.2099 1.0418 25 6 9.7228 -3.9361 -0.0466 26 6 8.6277 -4.4637 -0.7137 27 6 7.3566 -4.2241 -0.2271 28 6 7.2311 -3.4507 0.9295 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6807 0.8905 31 1 3.8752 -0.6795 -0.8895 32 1 4.8901 -4.0855 -1.1514 33 1 4.4513 -2.6117 -2.0479 34 1 2.2983 -4.4050 -0.7968 35 1 2.8269 -5.8888 -2.6745 36 1 3.6773 -4.5591 -3.5733 37 1 1.4227 -4.0145 -4.3644 38 1 0.6538 -4.7796 -2.9068 39 1 2.4269 -2.2339 -3.0123 40 1 1.0515 -2.5895 -1.8806 41 1 6.0235 -1.7763 3.5098 42 1 10.7147 -4.1257 -0.4295 43 1 8.7668 -5.0566 -1.6055 44 1 6.4859 -4.6224 -0.7267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072285264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:04 Heat of formation + Delta-G solvation = 4.060677 kcal Electronic energy + Delta-G solvation = -29757.561287 eV Core-core repulsion = 25802.665795 eV Total energy + Delta-G solvation = -3954.895492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.64932 -39.83348 -38.96037 -38.13014 -36.80422 -36.70852 -34.40899 -34.08769 -31.31408 -30.58067 -30.39037 -28.02872 -26.21283 -24.88705 -24.14188 -23.68373 -23.37774 -23.05348 -20.13565 -19.75207 -19.36990 -18.95291 -18.30546 -17.95857 -17.26460 -17.13283 -16.77078 -16.27559 -16.14674 -16.02768 -15.66046 -15.53309 -15.17568 -14.57722 -14.36161 -14.23519 -13.99773 -13.60370 -13.51150 -13.47103 -13.20518 -13.11348 -13.07206 -13.05944 -12.93200 -12.59955 -12.45674 -12.27735 -11.94830 -11.91285 -11.70167 -11.58882 -11.35731 -10.96411 -10.82497 -10.62038 -10.48604 -9.73863 -9.58404 -9.53324 -8.14016 -6.14404 -0.45962 -0.19325 0.26133 1.01152 1.39721 1.42869 1.50806 1.59551 2.22562 2.43292 2.80380 2.96163 3.18485 3.25157 3.44432 3.71076 3.75562 3.84419 3.94790 4.01876 4.02895 4.09065 4.19100 4.27218 4.32737 4.52430 4.59911 4.73150 4.79894 4.86919 4.95604 5.04653 5.07352 5.11043 5.15977 5.16747 5.20928 5.24674 5.40941 5.54761 5.58855 5.62968 5.74520 5.79614 5.92520 6.16445 6.46895 6.88924 6.89486 7.45082 9.02506 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.004857 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.067482 B = 5763.864117 C = 7117.537789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.013 3.987 3 Si 0.926 3.074 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.509 4.509 8 H 0.046 0.954 9 C 0.232 3.768 10 N -0.980 5.980 11 C 0.138 3.862 12 C -0.127 4.127 13 C -0.116 4.116 14 C -0.142 4.142 15 C -0.124 4.124 16 S 2.718 3.282 17 O -0.989 6.989 18 O -0.989 6.989 19 C -0.770 4.770 20 C 0.216 3.784 21 N -0.556 5.556 22 H 0.441 0.559 23 C 0.258 3.742 24 N -0.509 5.509 25 C 0.131 3.869 26 C -0.171 4.171 27 C -0.063 4.063 28 C -0.104 4.104 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.226 0.774 42 H 0.203 0.797 43 H 0.182 0.818 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.966 -6.836 -3.394 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.184 4.184 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.108 3.892 10 N -0.818 5.818 11 C 0.013 3.987 12 C -0.147 4.147 13 C -0.154 4.154 14 C -0.179 4.179 15 C -0.162 4.162 16 S 2.810 3.190 17 O -0.980 6.980 18 O -0.979 6.979 19 C -0.867 4.867 20 C 0.080 3.920 21 N -0.162 5.162 22 H 0.283 0.717 23 C 0.026 3.974 24 N -0.222 5.222 25 C -0.034 4.034 26 C -0.191 4.191 27 C -0.089 4.089 28 C -0.111 4.111 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.242 0.758 42 H 0.220 0.780 43 H 0.199 0.801 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 21.126 -6.765 -2.318 22.304 hybrid contribution -0.615 1.165 0.284 1.347 sum 20.511 -5.600 -2.034 21.359 Atomic orbital electron populations 1.70056 1.08065 1.27512 1.53265 1.25656 0.95361 1.02467 0.94916 0.86041 0.79964 0.79691 0.79312 1.18725 1.21683 1.16677 1.21607 0.91233 0.93471 1.48555 0.93586 1.19271 0.93448 0.78591 0.97919 1.57077 1.78705 1.24669 1.21301 1.21483 0.96437 0.95257 0.85491 1.22887 0.96866 0.97907 0.97054 1.22872 0.97810 0.98803 0.95884 1.22825 0.97635 0.97394 1.00089 1.22878 0.99478 0.96179 0.97646 1.00715 0.73228 0.72536 0.72557 1.93530 1.70839 1.75711 1.57914 1.93480 1.87240 1.31490 1.85698 1.31897 1.22209 1.22328 1.10273 1.22371 0.82242 0.91219 0.96176 1.41846 1.06692 1.44260 1.23356 0.71697 1.18649 0.90430 0.97335 0.91012 1.66599 1.23078 1.17874 1.14635 1.23282 1.01265 0.90573 0.88270 1.22366 0.91228 1.02410 1.03083 1.21533 1.00173 0.94384 0.92845 1.19262 0.91779 1.02215 0.97873 0.92934 0.94796 0.93414 0.89372 0.88762 0.92742 0.90894 0.87561 0.90232 0.91640 0.90379 0.94323 0.75755 0.78015 0.80078 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.93 42.14 27.47 68.60 1.88 44.02 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 7 C -0.51 -27.86 7.81 25.60 0.20 -27.66 16 8 H 0.05 2.84 6.46 -2.91 -0.02 2.82 16 9 C 0.23 10.31 4.19 85.64 0.36 10.67 16 10 N -0.98 -38.15 2.80 -519.83 -1.45 -39.60 16 11 C 0.14 4.44 5.21 86.38 0.45 4.89 16 12 C -0.13 -4.47 3.36 -10.20 -0.03 -4.51 16 13 C -0.12 -3.01 7.64 31.12 0.24 -2.78 16 14 C -0.14 -4.21 8.08 31.12 0.25 -3.96 16 15 C -0.12 -4.70 6.26 31.18 0.20 -4.51 16 16 S 2.72 106.18 5.77 -56.49 -0.33 105.85 16 17 O -0.99 -45.35 16.73 -128.00 -2.14 -47.49 16 18 O -0.99 -41.12 16.99 -128.00 -2.17 -43.30 16 19 C -0.77 -23.78 6.38 23.48 0.15 -23.63 16 20 C 0.22 5.22 11.47 82.98 0.95 6.17 16 21 N -0.56 -11.52 6.05 -192.33 -1.16 -12.69 16 22 H 0.44 5.76 8.96 -92.71 -0.83 4.93 16 23 C 0.26 6.61 8.43 133.93 1.13 7.74 16 24 N -0.51 -11.69 10.39 -192.74 -2.00 -13.69 16 25 C 0.13 2.17 11.15 84.83 0.95 3.11 16 26 C -0.17 -2.76 10.10 22.36 0.23 -2.53 16 27 C -0.06 -1.48 10.20 22.61 0.23 -1.25 16 28 C -0.10 -2.96 6.38 -20.18 -0.13 -3.09 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.03 1.51 6.67 -2.39 -0.02 1.49 16 31 H 0.05 1.94 7.43 -2.39 -0.02 1.92 16 32 H 0.09 2.39 5.09 -2.39 -0.01 2.37 16 33 H 0.09 2.63 7.71 -2.38 -0.02 2.61 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 2.14 8.10 -2.39 -0.02 2.12 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 2.80 7.90 -2.39 -0.02 2.78 16 40 H 0.04 1.86 6.43 -2.39 -0.02 1.85 16 41 H 0.23 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 44 H 0.15 3.20 5.58 -2.91 -0.02 3.18 16 Total: -1.00 -81.05 368.39 -1.29 -82.34 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.16 Total: 22.83 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 5.62 Total: -40.13 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -4.32 Total: -124.13 kcal Atomic # 8 Polarization: -86.47 SS G_CDS: -4.32 Total: -90.79 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Atomic # 16 Polarization: 106.18 SS G_CDS: -0.33 Total: 105.85 kcal Total: -81.05 -1.29 -82.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072285264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.401 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds