Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36061 * 116.99426 * 2 1 4 4 C 1.38623 * 119.99116 * 359.97438 * 3 2 1 5 5 C 1.38152 * 120.04518 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.01738 * 0.30326 * 5 4 3 7 7 N 1.39926 * 120.01058 * 179.69751 * 6 5 4 8 8 C 1.46496 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47430 * 89.99537 * 8 7 6 10 10 O 1.21294 * 119.99847 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99925 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99738 * 179.97438 * 11 9 8 13 13 H 1.08003 * 120.00206 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99851 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00077 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99998 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47019 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46776 * 120.00203 * 16 14 12 19 19 H 1.48499 * 109.47297 * 240.00353 * 16 14 12 20 20 C 1.46498 * 119.99978 * 179.97438 * 7 6 5 21 21 C 1.50706 * 109.47112 * 90.00173 * 20 7 6 22 22 C 1.34507 * 125.78889 * 89.99956 * 21 20 7 23 23 C 1.41382 * 106.84330 * 180.02562 * 22 21 20 24 24 C 1.34514 * 106.83944 * 359.97438 * 23 22 21 25 25 O 1.34301 * 125.78772 * 269.69706 * 21 20 7 26 26 C 1.38849 * 119.97351 * 359.42159 * 6 5 4 27 27 C 1.38282 * 119.96017 * 0.55330 * 26 6 5 28 28 F 1.35103 * 120.01378 * 179.72031 * 27 26 6 29 29 H 1.09004 * 109.47435 * 299.99334 * 1 2 3 30 30 H 1.09000 * 109.47752 * 60.00047 * 1 2 3 31 31 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.98163 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.98880 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47125 * 210.00033 * 8 7 6 35 35 H 1.09008 * 109.47028 * 329.99365 * 8 7 6 36 36 H 0.96997 * 120.00289 * 0.02562 * 11 9 8 37 37 H 0.97001 * 119.99879 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47405 * 209.99765 * 20 7 6 39 39 H 1.08999 * 109.47531 * 330.00201 * 20 7 6 40 40 H 1.08006 * 126.58160 * 0.03443 * 22 21 20 41 41 H 1.07998 * 126.57999 * 179.97438 * 23 22 21 42 42 H 1.07999 * 125.79042 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.01962 * 180.29303 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2124 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9172 3.6064 0.0000 6 6 3.3038 3.6809 -0.0053 7 7 3.9376 4.9284 -0.0111 8 6 3.1383 6.1561 -0.0111 9 6 2.8698 6.5808 1.4096 10 8 3.3039 5.9229 2.3315 11 7 2.1483 7.6923 1.6558 12 6 1.9036 8.0783 2.9484 13 1 2.2895 7.4921 3.7693 14 6 1.1593 9.2238 3.2022 15 7 0.6894 9.9369 2.2034 16 14 0.8254 9.7495 4.9634 17 1 1.4589 8.7838 5.8968 18 1 1.3923 11.1029 5.1919 19 1 -0.6401 9.7800 5.2015 20 6 5.4004 5.0068 -0.0162 21 6 5.8974 5.0294 -1.4387 22 6 6.0984 6.1307 -2.1843 23 6 6.5634 5.6924 -3.4455 24 6 6.6193 4.3493 -3.3949 25 8 6.2201 3.9536 -2.1751 26 6 4.0611 2.5171 0.0010 27 6 3.4336 1.2849 0.0010 28 9 4.1694 0.1518 0.0014 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3176 -0.0005 33 1 1.3278 4.5114 0.0000 34 1 3.6838 6.9448 -0.5293 35 1 2.1921 5.9737 -0.5208 36 1 1.8014 8.2186 0.9186 37 1 0.1695 10.7364 2.3806 38 1 5.7173 5.9165 0.4938 39 1 5.8126 4.1391 0.4989 40 1 5.9360 7.1537 -1.8783 41 1 6.8238 6.3161 -4.2878 42 1 6.9359 3.6997 -4.1975 43 1 5.1396 2.5743 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072292486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -53.921987 kcal Electronic energy + Delta-G solvation = -30421.683165 eV Core-core repulsion = 25963.486091 eV Total energy + Delta-G solvation = -4458.197074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.60308 -42.54167 -39.99217 -38.79795 -37.59053 -35.39762 -33.94465 -32.96950 -31.51134 -31.15402 -30.42454 -29.38435 -27.55419 -27.16105 -25.20095 -24.11387 -22.47149 -21.74873 -21.36025 -20.38977 -19.34037 -18.38725 -18.01730 -17.52235 -16.94601 -16.73143 -16.22597 -16.01136 -15.95145 -15.73022 -14.96258 -14.89607 -14.64895 -14.52197 -14.44627 -14.12251 -13.74700 -13.67519 -13.24731 -12.90646 -12.82365 -12.69337 -12.54879 -12.28334 -12.19439 -11.81313 -11.68245 -11.58473 -11.54198 -11.25872 -11.13105 -10.80066 -10.40164 -10.30414 -9.92897 -9.60128 -9.50126 -8.74277 -8.54472 -8.41176 -8.05692 -6.97083 -6.49308 -3.90828 1.31178 1.59573 1.67224 2.54833 2.97844 3.10560 3.21871 3.23550 3.29672 3.37509 3.76840 3.82859 4.12388 4.42289 4.65693 4.76763 4.90705 4.96631 4.99829 5.01996 5.12079 5.12865 5.19467 5.25633 5.32108 5.41182 5.48923 5.59117 5.63007 5.72499 5.79477 5.80947 5.92267 6.04891 6.06711 6.17120 6.28146 6.38368 6.47461 6.65206 7.11956 7.28773 7.34750 7.48046 7.59253 7.97131 8.51384 9.09739 9.43895 9.94434 10.67411 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.008047 B = 0.003649 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.754060 B = 7671.043152 C =10373.755226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.029 3.971 4 C -0.130 4.130 5 C -0.156 4.156 6 C 0.230 3.770 7 N -0.590 5.590 8 C 0.111 3.889 9 C 0.416 3.584 10 O -0.580 6.580 11 N -0.560 5.560 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.025 3.975 15 N -0.899 5.899 16 Si 0.928 3.072 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.206 3.794 21 C -0.028 4.028 22 C -0.200 4.200 23 C -0.216 4.216 24 C -0.043 4.043 25 O -0.170 6.170 26 C -0.193 4.193 27 C 0.115 3.885 28 F -0.136 7.136 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.199 0.801 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -11.100 -11.870 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C -0.017 4.017 4 C -0.149 4.149 5 C -0.178 4.178 6 C 0.129 3.871 7 N -0.299 5.299 8 C -0.016 4.016 9 C 0.200 3.800 10 O -0.464 6.464 11 N -0.197 5.197 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.177 4.177 15 N -0.540 5.540 16 Si 0.755 3.245 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.207 1.207 20 C 0.082 3.918 21 C -0.080 4.080 22 C -0.220 4.220 23 C -0.235 4.235 24 C -0.111 4.111 25 O -0.066 6.066 26 C -0.216 4.216 27 C 0.095 3.905 28 F -0.115 7.115 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.215 0.785 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.912 -11.737 -11.114 16.894 hybrid contribution -0.553 1.023 0.171 1.175 sum 4.359 -10.714 -10.944 15.924 Atomic orbital electron populations 1.22999 0.78760 1.03550 1.01283 1.86082 1.20969 1.25994 1.90110 1.18641 0.90513 0.85378 1.07188 1.20822 0.99772 0.90865 1.03490 1.20582 0.92530 0.97983 1.06701 1.17331 0.91172 0.84744 0.93887 1.45932 1.03381 1.02186 1.78388 1.21285 0.96951 0.86632 0.96735 1.20478 0.84894 0.83972 0.90641 1.90553 1.55169 1.55287 1.45403 1.41901 1.46382 1.22425 1.08949 1.19743 1.30905 1.07984 0.84270 0.87884 1.25256 0.96713 0.96171 0.99606 1.69611 1.36134 1.17097 1.31202 0.85823 0.78115 0.78540 0.82032 1.19209 1.20703 1.20694 1.19743 0.80207 1.05362 0.86472 1.23345 1.03749 0.84588 0.96272 1.21652 1.06498 0.99525 0.94298 1.21815 1.07442 0.94951 0.99279 1.24013 1.04439 0.95856 0.86827 1.84061 1.64579 1.35475 1.22458 1.20333 1.00486 0.89223 1.11603 1.16513 0.85676 0.82127 1.06212 1.91461 1.76809 1.49037 1.94160 0.92692 0.92862 0.88562 0.84720 0.84959 0.89005 0.88994 0.77448 0.91834 0.86954 0.88956 0.83467 0.83681 0.78456 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.51 10.36 -19.94 -0.21 -4.72 16 3 C 0.03 0.45 6.69 -39.20 -0.26 0.18 16 4 C -0.13 -1.84 9.03 -39.47 -0.36 -2.20 16 5 C -0.16 -2.42 9.21 -39.38 -0.36 -2.78 16 6 C 0.23 3.71 6.55 -83.70 -0.55 3.16 16 7 N -0.59 -9.17 2.08 -174.44 -0.36 -9.54 16 8 C 0.11 1.77 5.64 -5.20 -0.03 1.74 16 9 C 0.42 8.98 7.85 -10.99 -0.09 8.89 16 10 O -0.58 -14.78 16.01 5.55 0.09 -14.69 16 11 N -0.56 -13.19 5.29 -10.96 -0.06 -13.25 16 12 C -0.30 -7.96 9.68 -14.93 -0.14 -8.11 16 13 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 14 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 15 N -0.90 -23.45 13.05 55.50 0.72 -22.72 16 16 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.21 2.82 5.70 -5.19 -0.03 2.79 16 21 C -0.03 -0.36 6.90 -35.62 -0.25 -0.60 16 22 C -0.20 -2.41 10.81 -39.71 -0.43 -2.84 16 23 C -0.22 -2.32 10.91 -39.70 -0.43 -2.75 16 24 C -0.04 -0.45 12.09 29.42 0.36 -0.10 16 25 O -0.17 -2.22 10.65 5.69 0.06 -2.16 16 26 C -0.19 -3.01 9.18 -39.34 -0.36 -3.37 16 27 C 0.12 1.85 7.31 -39.32 -0.29 1.56 16 28 F -0.14 -2.22 17.11 2.25 0.04 -2.18 16 29 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.54 6.29 -52.49 -0.33 1.21 16 33 H 0.13 2.01 6.14 -52.49 -0.32 1.68 16 34 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.09 1.32 6.20 -51.92 -0.32 1.00 16 36 H 0.39 8.78 7.90 -40.82 -0.32 8.46 16 37 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 38 H 0.11 1.50 8.07 -51.93 -0.42 1.08 16 39 H 0.09 1.22 6.19 -51.93 -0.32 0.89 16 40 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.14 2.00 6.13 -52.48 -0.32 1.68 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -32.47 376.37 -6.17 -38.64 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -4.77 Total: 12.18 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.33 Total: -2.62 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.30 Total: -45.51 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.47 -6.17 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072292486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.285 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds