Wall clock time and date at job start Tue Mar 31 2020 05:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36061 * 116.99426 * 2 1 4 4 C 1.38623 * 119.99116 * 359.97438 * 3 2 1 5 5 C 1.38152 * 120.04518 * 179.97438 * 4 3 2 6 6 C 1.38864 * 120.01738 * 0.30326 * 5 4 3 7 7 N 1.39926 * 120.01058 * 179.69751 * 6 5 4 8 8 C 1.46496 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47430 * 89.99537 * 8 7 6 10 10 O 1.21294 * 119.99847 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99925 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99738 * 179.97438 * 11 9 8 13 13 H 1.08003 * 120.00206 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99851 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00077 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99998 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47019 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46776 * 120.00203 * 16 14 12 19 19 H 1.48499 * 109.47297 * 240.00353 * 16 14 12 20 20 C 1.46498 * 119.99978 * 179.97438 * 7 6 5 21 21 C 1.50706 * 109.47112 * 90.00173 * 20 7 6 22 22 C 1.34507 * 125.78889 * 89.99956 * 21 20 7 23 23 C 1.41382 * 106.84330 * 180.02562 * 22 21 20 24 24 C 1.34514 * 106.83944 * 359.97438 * 23 22 21 25 25 O 1.34301 * 125.78772 * 269.69706 * 21 20 7 26 26 C 1.38849 * 119.97351 * 359.42159 * 6 5 4 27 27 C 1.38282 * 119.96017 * 0.55330 * 26 6 5 28 28 F 1.35103 * 120.01378 * 179.72031 * 27 26 6 29 29 H 1.09004 * 109.47435 * 299.99334 * 1 2 3 30 30 H 1.09000 * 109.47752 * 60.00047 * 1 2 3 31 31 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.98163 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.98880 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47125 * 210.00033 * 8 7 6 35 35 H 1.09008 * 109.47028 * 329.99365 * 8 7 6 36 36 H 0.96997 * 120.00289 * 0.02562 * 11 9 8 37 37 H 0.97001 * 119.99879 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47405 * 209.99765 * 20 7 6 39 39 H 1.08999 * 109.47531 * 330.00201 * 20 7 6 40 40 H 1.08006 * 126.58160 * 0.03443 * 22 21 20 41 41 H 1.07998 * 126.57999 * 179.97438 * 23 22 21 42 42 H 1.07999 * 125.79042 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.01962 * 180.29303 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2124 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9172 3.6064 0.0000 6 6 3.3038 3.6809 -0.0053 7 7 3.9376 4.9284 -0.0111 8 6 3.1383 6.1561 -0.0111 9 6 2.8698 6.5808 1.4096 10 8 3.3039 5.9229 2.3315 11 7 2.1483 7.6923 1.6558 12 6 1.9036 8.0783 2.9484 13 1 2.2895 7.4921 3.7693 14 6 1.1593 9.2238 3.2022 15 7 0.6894 9.9369 2.2034 16 14 0.8254 9.7495 4.9634 17 1 1.4589 8.7838 5.8968 18 1 1.3923 11.1029 5.1919 19 1 -0.6401 9.7800 5.2015 20 6 5.4004 5.0068 -0.0162 21 6 5.8974 5.0294 -1.4387 22 6 6.0984 6.1307 -2.1843 23 6 6.5634 5.6924 -3.4455 24 6 6.6193 4.3493 -3.3949 25 8 6.2201 3.9536 -2.1751 26 6 4.0611 2.5171 0.0010 27 6 3.4336 1.2849 0.0010 28 9 4.1694 0.1518 0.0014 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3176 -0.0005 33 1 1.3278 4.5114 0.0000 34 1 3.6838 6.9448 -0.5293 35 1 2.1921 5.9737 -0.5208 36 1 1.8014 8.2186 0.9186 37 1 0.1695 10.7364 2.3806 38 1 5.7173 5.9165 0.4938 39 1 5.8126 4.1391 0.4989 40 1 5.9360 7.1537 -1.8783 41 1 6.8238 6.3161 -4.2878 42 1 6.9359 3.6997 -4.1975 43 1 5.1396 2.5743 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072292486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:05 Heat of formation + Delta-G solvation = -73.394501 kcal Electronic energy + Delta-G solvation = -30422.527557 eV Core-core repulsion = 25963.486091 eV Total energy + Delta-G solvation = -4459.041466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.84637 -43.43468 -41.16896 -40.22269 -38.99560 -36.61844 -35.81693 -33.86745 -33.29405 -32.41512 -31.50113 -30.58293 -28.74394 -28.07383 -26.78586 -25.45713 -23.64182 -22.68959 -22.49028 -21.43671 -20.90014 -19.91641 -19.47939 -18.49534 -18.11368 -17.96518 -17.66885 -17.17495 -17.06847 -16.82898 -16.53109 -16.00031 -15.99465 -15.79890 -15.56951 -15.38688 -15.28762 -15.16061 -14.55016 -14.04152 -13.81016 -13.69116 -13.58380 -13.51001 -13.43060 -13.31028 -13.10648 -12.86524 -12.69890 -12.55436 -12.38403 -12.24110 -12.12437 -11.92397 -11.49464 -10.82650 -10.78349 -10.15193 -9.98714 -9.85249 -9.42541 -8.46573 -8.15440 -5.92885 0.11987 0.43204 0.74143 1.36505 1.43257 1.55723 1.66763 2.04049 2.05140 2.19635 2.31750 2.37412 2.64596 3.21065 3.25431 3.29263 3.66843 3.77946 3.92672 3.99138 4.10933 4.18552 4.27758 4.30948 4.39732 4.41755 4.42969 4.43272 4.48286 4.62556 4.68817 4.74891 4.91716 4.96236 5.05941 5.08671 5.21498 5.22838 5.43664 5.49923 5.64744 5.95499 6.12773 6.20891 6.29953 6.45976 6.62334 7.15405 7.58277 8.13446 8.71756 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.008047 B = 0.003649 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.754060 B = 7671.043152 C =10373.755226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.028 3.972 4 C -0.125 4.125 5 C -0.167 4.167 6 C 0.214 3.786 7 N -0.594 5.594 8 C 0.124 3.876 9 C 0.421 3.579 10 O -0.621 6.621 11 N -0.569 5.569 12 C -0.328 4.328 13 H 0.076 0.924 14 C -0.008 4.008 15 N -0.917 5.917 16 Si 0.986 3.014 17 H -0.276 1.276 18 H -0.272 1.272 19 H -0.272 1.272 20 C 0.206 3.794 21 C -0.045 4.045 22 C -0.203 4.203 23 C -0.225 4.225 24 C -0.041 4.041 25 O -0.188 6.188 26 C -0.194 4.194 27 C 0.095 3.905 28 F -0.142 7.142 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.398 0.602 37 H 0.277 0.723 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.233 0.767 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -11.056 -13.214 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C -0.019 4.019 4 C -0.144 4.144 5 C -0.189 4.189 6 C 0.113 3.887 7 N -0.302 5.302 8 C -0.003 4.003 9 C 0.208 3.792 10 O -0.507 6.507 11 N -0.207 5.207 12 C -0.458 4.458 13 H 0.094 0.906 14 C -0.208 4.208 15 N -0.558 5.558 16 Si 0.810 3.190 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.197 1.197 20 C 0.083 3.917 21 C -0.096 4.096 22 C -0.223 4.223 23 C -0.244 4.244 24 C -0.108 4.108 25 O -0.085 6.085 26 C -0.217 4.217 27 C 0.075 3.925 28 F -0.121 7.121 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.180 0.820 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.173 0.827 41 H 0.185 0.815 42 H 0.249 0.751 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.323 -11.695 -12.486 17.645 hybrid contribution -0.360 0.902 0.536 1.109 sum 3.963 -10.793 -11.950 16.583 Atomic orbital electron populations 1.23344 0.76352 1.05584 1.02272 1.86069 1.23500 1.25532 1.89920 1.18770 0.90408 0.86210 1.06510 1.21079 1.01107 0.89938 1.02300 1.20764 0.92493 0.98687 1.06991 1.17520 0.91634 0.85048 0.94510 1.46021 1.04004 1.01779 1.78435 1.21207 0.98656 0.87658 0.92799 1.21501 0.82651 0.82420 0.92678 1.90528 1.56259 1.56266 1.47636 1.41931 1.47256 1.23328 1.08136 1.19624 1.32363 1.08741 0.85066 0.90590 1.25911 0.96110 0.95749 1.03049 1.69659 1.36271 1.17350 1.32518 0.84975 0.78193 0.78082 0.77744 1.20074 1.19725 1.19745 1.19714 0.79355 1.05179 0.87470 1.23083 1.05408 0.85038 0.96068 1.21903 1.05845 0.99664 0.94846 1.22136 1.07417 0.95421 0.99437 1.24781 1.02952 0.96650 0.86438 1.84045 1.65061 1.35845 1.23509 1.20378 1.00790 0.89118 1.11451 1.16759 0.86384 0.82100 1.07295 1.91435 1.77030 1.49301 1.94325 0.92104 0.91350 0.86187 0.81992 0.84742 0.86290 0.86888 0.76830 0.91353 0.87134 0.89180 0.82697 0.81455 0.75071 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.15 10.36 -94.25 -0.98 -10.13 16 3 C 0.03 0.83 6.69 22.52 0.15 0.98 16 4 C -0.13 -3.39 9.03 22.34 0.20 -3.18 16 5 C -0.17 -5.07 9.21 22.40 0.21 -4.86 16 6 C 0.21 6.85 6.55 38.14 0.25 7.10 16 7 N -0.59 -18.25 2.08 -705.82 -1.47 -19.72 16 8 C 0.12 3.83 5.64 85.63 0.48 4.32 16 9 C 0.42 18.31 7.85 87.66 0.69 19.00 16 10 O -0.62 -32.34 16.01 -3.07 -0.05 -32.39 16 11 N -0.57 -27.05 5.29 -306.98 -1.62 -28.67 16 12 C -0.33 -17.77 9.68 84.04 0.81 -16.96 16 13 H 0.08 4.46 7.16 -2.91 -0.02 4.44 16 14 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 15 N -0.92 -47.34 13.05 21.66 0.28 -47.06 16 16 Si 0.99 41.72 29.55 68.60 2.03 43.75 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.21 5.66 5.70 85.64 0.49 6.15 16 21 C -0.04 -1.13 6.90 24.83 0.17 -0.95 16 22 C -0.20 -4.60 10.81 22.19 0.24 -4.36 16 23 C -0.23 -4.34 10.91 22.19 0.24 -4.10 16 24 C -0.04 -0.77 12.09 66.97 0.81 0.04 16 25 O -0.19 -4.73 10.65 -2.54 -0.03 -4.76 16 26 C -0.19 -6.10 9.18 22.43 0.21 -5.89 16 27 C 0.09 3.06 7.31 22.44 0.16 3.22 16 28 F -0.14 -4.69 17.11 44.97 0.77 -3.92 16 29 H 0.06 0.96 7.66 -2.38 -0.02 0.95 16 30 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.16 3.35 6.29 -2.91 -0.02 3.33 16 33 H 0.13 3.94 6.14 -2.91 -0.02 3.92 16 34 H 0.12 3.08 8.07 -2.39 -0.02 3.06 16 35 H 0.11 3.07 6.20 -2.38 -0.01 3.05 16 36 H 0.40 17.78 7.90 -92.71 -0.73 17.05 16 37 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 38 H 0.11 3.00 8.07 -2.39 -0.02 2.98 16 39 H 0.09 2.45 6.19 -2.39 -0.01 2.44 16 40 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 41 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.23 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.14 4.23 6.13 -2.91 -0.02 4.21 16 Total: -1.00 -70.52 376.37 5.97 -64.55 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.35 Total: 36.36 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.69 Total: 1.98 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.81 Total: -95.45 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -1.05 Total: -47.28 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.77 Total: -3.92 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -70.52 5.97 -64.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072292486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.846 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds