Wall clock time and date at job start Tue Mar 31 2020 04:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34704 * 117.00468 * 2 1 4 4 O 1.21469 * 119.99853 * 359.97438 * 3 2 1 5 5 C 1.47741 * 120.00144 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.12584 * 359.97057 * 5 3 2 7 7 C 1.37950 * 119.96506 * 180.02562 * 6 5 3 8 8 C 1.38300 * 120.20998 * 359.72852 * 7 6 5 9 9 C 1.38827 * 120.24580 * 0.54834 * 8 7 6 10 10 O 1.35910 * 119.97654 * 179.72175 * 9 8 7 11 11 C 1.42901 * 117.00578 * 359.73271 * 10 9 8 12 12 C 1.52993 * 109.47320 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47089 * 64.99244 * 12 11 10 14 14 C 1.46905 * 111.00168 * 189.99717 * 13 12 11 15 15 C 1.50700 * 109.47185 * 165.91259 * 14 13 12 16 16 H 1.07990 * 120.00109 * 355.14673 * 15 14 13 17 17 C 1.37879 * 119.99985 * 175.14803 * 15 14 13 18 18 N 1.31509 * 120.00288 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99787 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47049 * 90.00278 * 19 17 15 21 21 H 1.48497 * 109.46843 * 210.00015 * 19 17 15 22 22 H 1.48498 * 109.47118 * 330.00391 * 19 17 15 23 23 C 1.46900 * 110.99919 * 66.05100 * 13 12 11 24 24 C 1.53002 * 109.47131 * 58.54351 * 23 13 12 25 25 C 1.53783 * 113.61224 * 271.32865 * 24 23 13 26 26 C 1.53957 * 87.01837 * 220.05131 * 25 24 23 27 27 C 1.53779 * 87.11177 * 25.36462 * 26 25 24 28 28 C 1.38480 * 120.03585 * 359.44948 * 9 8 7 29 29 H 1.08996 * 109.46764 * 59.99996 * 1 2 3 30 30 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46936 * 300.00652 * 1 2 3 32 32 H 1.08004 * 120.01514 * 0.02562 * 6 5 3 33 33 H 1.07992 * 119.89728 * 180.02562 * 7 6 5 34 34 H 1.07993 * 119.87852 * 180.26963 * 8 7 6 35 35 H 1.08996 * 109.47086 * 59.99368 * 11 10 9 36 36 H 1.09004 * 109.46453 * 299.99311 * 11 10 9 37 37 H 1.09004 * 109.47121 * 305.00035 * 12 11 10 38 38 H 1.08993 * 109.47167 * 184.99564 * 12 11 10 39 39 H 1.09000 * 109.47595 * 285.91880 * 14 13 12 40 40 H 1.09003 * 109.46442 * 45.91452 * 14 13 12 41 41 H 0.96998 * 120.00318 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47475 * 178.54376 * 23 13 12 43 43 H 1.08997 * 109.47216 * 298.54403 * 23 13 12 44 44 H 1.08997 * 112.84967 * 42.52868 * 24 23 13 45 45 H 1.08998 * 113.61394 * 334.56620 * 25 24 23 46 46 H 1.09002 * 113.61284 * 105.47221 * 25 24 23 47 47 H 1.09007 * 113.53641 * 270.81244 * 26 25 24 48 48 H 1.08997 * 113.66977 * 139.93559 * 26 25 24 49 49 H 1.09009 * 113.61071 * 220.09156 * 27 26 25 50 50 H 1.08991 * 113.68998 * 89.20316 * 27 26 25 51 51 H 1.07995 * 120.10235 * 180.25127 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2774 -0.0006 6 6 4.3021 0.1078 -0.0005 7 6 5.6795 0.1838 -0.0005 8 6 6.3085 1.4155 -0.0062 9 6 5.5585 2.5837 -0.0006 10 8 6.1823 3.7912 -0.0005 11 6 7.6113 3.7833 -0.0006 12 6 8.1294 5.2228 -0.0012 13 7 7.7443 5.8823 1.2537 14 6 8.0135 7.3253 1.1943 15 6 7.3041 8.0158 2.3305 16 1 6.6500 7.4534 2.9802 17 6 7.4901 9.3657 2.5406 18 7 6.8715 9.9683 3.5325 19 14 8.6222 10.3385 1.4173 20 1 7.8420 10.8768 0.2741 21 1 9.2269 11.4622 2.1767 22 1 9.6973 9.4498 0.9080 23 6 8.4236 5.2670 2.4017 24 6 9.9384 5.3611 2.2084 25 6 10.5364 4.1708 1.4400 26 6 11.7156 4.2288 2.4280 27 6 10.7457 4.8822 3.4266 28 6 4.1752 2.5194 -0.0006 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 3.8141 -0.8557 -0.0004 33 1 6.2685 -0.7213 -0.0009 34 1 7.3871 1.4687 -0.0106 35 1 7.9718 3.2674 -0.8905 36 1 7.9717 3.2675 0.8895 37 1 7.6977 5.7640 -0.8432 38 1 9.2156 5.2181 -0.0907 39 1 9.0864 7.4985 1.2770 40 1 7.6532 7.7232 0.2456 41 1 7.0027 10.9179 3.6805 42 1 8.1406 5.7908 3.3149 43 1 8.1314 4.2198 2.4783 44 1 10.2570 6.3313 1.8274 45 1 9.9450 3.2586 1.5191 46 1 10.8138 4.4090 0.4131 47 1 12.5212 4.8888 2.1061 48 1 12.0713 3.2478 2.7430 49 1 11.1919 5.6940 4.0012 50 1 10.2113 4.1660 4.0505 51 1 3.5907 3.4275 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072308443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:56 Heat of formation + Delta-G solvation = -61.648061 kcal Electronic energy + Delta-G solvation = -30575.161431 eV Core-core repulsion = 26441.348639 eV Total energy + Delta-G solvation = -4133.812792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.80518 -39.98341 -39.21175 -37.45964 -36.57060 -35.85620 -32.56376 -31.58849 -30.92804 -29.37801 -28.27760 -27.93797 -26.05751 -25.44574 -24.40575 -23.27813 -22.54768 -22.00611 -20.80468 -19.77702 -19.02218 -18.65757 -17.41658 -16.81944 -16.56275 -16.51833 -16.18651 -16.04032 -15.72439 -15.52681 -14.74177 -14.55149 -14.23852 -14.12885 -13.80187 -13.75464 -13.60040 -13.20530 -12.92432 -12.63471 -12.40330 -12.32867 -12.31099 -12.17232 -12.07768 -11.82638 -11.53276 -11.30982 -11.11321 -11.04192 -10.89346 -10.78541 -10.70874 -10.59303 -10.39713 -10.37280 -10.01227 -9.82421 -9.73354 -9.29142 -9.24025 -8.53684 -8.30040 -7.25369 -6.01601 -3.98023 0.49292 1.26850 2.37415 2.37976 3.28821 3.33526 3.35715 3.36480 3.62132 4.43263 4.44689 4.58034 4.62254 4.81620 4.83164 4.84410 4.85438 4.93247 4.94888 4.98372 5.07079 5.10097 5.17324 5.25467 5.29506 5.30740 5.35427 5.48318 5.68676 5.70010 5.76754 5.81274 5.84994 5.95775 5.98913 6.03418 6.08573 6.10990 6.16770 6.17570 6.19864 6.21237 6.46347 6.49260 6.55673 6.78988 6.93322 7.02181 7.45797 7.53793 7.64454 7.89861 8.06371 8.69618 9.09679 9.60204 11.11830 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010437 B = 0.002665 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.058036 B =10502.551364 C =12433.600287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.498 6.498 5 C -0.090 4.090 6 C -0.111 4.111 7 C -0.093 4.093 8 C -0.180 4.180 9 C 0.133 3.867 10 O -0.284 6.284 11 C 0.066 3.934 12 C 0.044 3.956 13 N -0.515 5.515 14 C 0.158 3.842 15 C -0.502 4.502 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.872 3.128 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.269 1.269 23 C 0.071 3.929 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.132 4.132 28 C -0.088 4.088 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.058 0.942 39 H -0.004 1.004 40 H 0.021 0.979 41 H 0.263 0.737 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -23.557 -8.071 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.354 3.646 4 O -0.386 6.386 5 C -0.091 4.091 6 C -0.129 4.129 7 C -0.111 4.111 8 C -0.199 4.199 9 C 0.086 3.914 10 O -0.196 6.196 11 C -0.010 4.010 12 C -0.084 4.084 13 N -0.237 5.237 14 C 0.032 3.968 15 C -0.541 4.541 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.699 3.301 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.193 1.193 23 C -0.057 4.057 24 C -0.165 4.165 25 C -0.177 4.177 26 C -0.180 4.180 27 C -0.170 4.170 28 C -0.107 4.107 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.014 0.986 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.423 -22.921 -7.931 24.258 hybrid contribution 1.463 0.732 -0.638 1.756 sum 1.039 -22.189 -8.569 23.809 Atomic orbital electron populations 1.23294 0.75885 1.03725 1.02838 1.86525 1.23604 1.32609 1.84474 1.21168 0.89076 0.81464 0.72912 1.90874 1.66707 1.35952 1.45037 1.18728 0.88800 0.94178 1.07380 1.21257 0.93807 0.97665 1.00172 1.20892 0.94176 0.97296 0.98746 1.21577 1.00645 0.92370 1.05307 1.18889 0.91810 0.85428 0.95263 1.86336 1.21427 1.24731 1.87150 1.23051 0.78075 0.99391 1.00459 1.22272 0.97992 0.92526 0.95656 1.62139 1.56465 1.04987 1.00137 1.20256 0.94838 0.83545 0.98122 1.21008 1.27037 0.93470 1.12542 0.90117 1.24890 0.95739 0.97569 0.95122 1.69890 1.43305 1.10590 1.30228 0.86924 0.81726 0.80131 0.81299 1.20223 1.21316 1.19349 1.22143 0.88774 0.98479 0.96343 1.23244 0.98051 0.98380 0.96829 1.23167 0.97743 0.98868 0.97970 1.22846 0.96786 1.00429 0.97933 1.22819 0.97530 1.00200 0.96454 1.20497 0.91972 0.97801 1.00452 0.91750 0.87960 0.91671 0.84596 0.85066 0.84931 0.92449 0.91707 0.90438 0.92466 0.98609 0.96076 0.92746 0.89209 0.92555 0.88726 0.90587 0.91989 0.90674 0.92078 0.91669 0.90337 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.70 9.81 -40.50 -0.40 -4.10 16 3 C 0.51 6.61 7.90 34.61 0.27 6.88 16 4 O -0.50 -7.87 16.13 -19.24 -0.31 -8.18 16 5 C -0.09 -1.12 5.87 -105.00 -0.62 -1.73 16 6 C -0.11 -1.09 9.61 -39.16 -0.38 -1.47 16 7 C -0.09 -0.84 10.03 -39.66 -0.40 -1.24 16 8 C -0.18 -1.92 9.04 -39.34 -0.36 -2.28 16 9 C 0.13 1.82 6.68 -39.27 -0.26 1.56 16 10 O -0.28 -4.49 10.08 -19.46 -0.20 -4.69 16 11 C 0.07 0.86 4.49 37.15 0.17 1.03 16 12 C 0.04 0.69 4.81 -3.83 -0.02 0.68 16 13 N -0.52 -10.26 4.62 -236.07 -1.09 -11.35 16 14 C 0.16 3.72 3.70 -4.97 -0.02 3.70 16 15 C -0.50 -14.15 8.96 -34.44 -0.31 -14.45 16 16 H 0.08 2.52 7.83 -52.49 -0.41 2.11 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 19 Si 0.87 21.40 27.57 -169.99 -4.69 16.71 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.26 6.40 56.52 0.36 -5.90 16 23 C 0.07 1.27 4.87 -3.82 -0.02 1.25 16 24 C -0.15 -2.23 2.90 -89.80 -0.26 -2.49 16 25 C -0.14 -1.67 5.68 -25.82 -0.15 -1.82 16 26 C -0.14 -1.63 8.09 -25.83 -0.21 -1.84 16 27 C -0.13 -1.77 7.65 -25.92 -0.20 -1.97 16 28 C -0.09 -1.25 9.53 -39.01 -0.37 -1.62 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.06 7.61 -52.48 -0.40 0.66 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.16 6.28 -52.49 -0.33 0.83 16 35 H 0.06 0.59 7.64 -51.93 -0.40 0.20 16 36 H 0.06 0.80 4.60 -51.93 -0.24 0.56 16 37 H 0.08 1.26 7.88 -51.93 -0.41 0.85 16 38 H 0.06 0.81 4.86 -51.93 -0.25 0.56 16 39 H 0.00 -0.08 4.66 -51.93 -0.24 -0.33 16 40 H 0.02 0.51 7.52 -51.93 -0.39 0.12 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.09 1.88 7.13 -51.93 -0.37 1.51 16 43 H 0.06 0.90 6.12 -51.93 -0.32 0.58 16 44 H 0.09 1.69 6.09 -51.93 -0.32 1.37 16 45 H 0.08 0.82 6.72 -51.93 -0.35 0.48 16 46 H 0.06 0.71 7.08 -51.93 -0.37 0.34 16 47 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 50 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 51 H 0.15 2.27 7.65 -52.49 -0.40 1.87 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -33.10 401.58 -9.75 -42.85 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.74 Total: 2.27 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.15 Total: -12.62 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.32 Total: -38.30 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.90 Total: -16.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.69 Total: 16.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.10 -9.75 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072308443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.794 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds