Wall clock time and date at job start Tue Mar 31 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47533 * 2 1 4 4 N 1.46504 * 109.46895 * 240.00281 * 2 1 3 5 5 S 1.65604 * 119.99837 * 95.00085 * 4 2 1 6 6 O 1.42106 * 104.27356 * 181.06874 * 5 4 2 7 7 O 1.42093 * 104.27912 * 308.92553 * 5 4 2 8 8 C 1.81404 * 104.44966 * 65.00219 * 5 4 2 9 9 C 1.53003 * 109.47100 * 180.02562 * 8 5 4 10 10 C 1.50694 * 109.46988 * 179.97438 * 9 8 5 11 11 H 1.08002 * 120.00132 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99976 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99723 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00004 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47396 * 89.99841 * 14 12 10 16 16 H 1.48501 * 109.47286 * 209.99668 * 14 12 10 17 17 H 1.48497 * 109.47440 * 329.99607 * 14 12 10 18 18 C 1.50702 * 109.47463 * 120.00697 * 2 1 3 19 19 C 1.38295 * 119.96690 * 80.27063 * 18 2 1 20 20 C 1.38261 * 120.13280 * 180.28506 * 19 18 2 21 21 C 1.38138 * 120.06486 * 359.44063 * 20 19 18 22 22 C 1.38816 * 119.93404 * 0.28543 * 21 20 19 23 23 N 1.40185 * 120.06919 * 179.97438 * 22 21 20 24 24 C 1.35220 * 126.05247 * 4.99573 * 23 22 21 25 25 C 1.35320 * 107.71140 * 180.02562 * 24 23 22 26 26 C 1.39913 * 107.93327 * 0.02562 * 25 24 23 27 27 N 1.30880 * 108.24411 * 359.71559 * 26 25 24 28 28 C 1.38098 * 119.96146 * 260.00310 * 18 2 1 29 29 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46998 * 299.99724 * 1 2 3 31 31 H 1.09003 * 109.47435 * 59.99352 * 1 2 3 32 32 H 0.97002 * 120.00290 * 274.99774 * 4 2 1 33 33 H 1.09000 * 109.46915 * 299.99662 * 8 5 4 34 34 H 1.09004 * 109.47373 * 59.99633 * 8 5 4 35 35 H 1.09000 * 109.46937 * 299.99620 * 9 8 5 36 36 H 1.08993 * 109.46893 * 59.99592 * 9 8 5 37 37 H 0.97006 * 119.99797 * 180.02562 * 13 12 10 38 38 H 1.08000 * 119.93710 * 0.02562 * 19 18 2 39 39 H 1.08002 * 119.97135 * 179.72697 * 20 19 18 40 40 H 1.07999 * 120.03436 * 180.25965 * 21 20 19 41 41 H 1.08002 * 126.14336 * 359.96331 * 24 23 22 42 42 H 1.08000 * 126.03130 * 180.02562 * 25 24 23 43 43 H 1.08005 * 125.87926 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.03778 * 0.02562 * 28 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 16 2.4121 0.1773 -2.5505 6 8 2.8121 -0.8074 -3.4937 7 8 1.2750 0.9967 -2.7846 8 6 3.8313 1.1873 -2.0441 9 6 4.2934 2.0455 -3.2235 10 6 5.4719 2.8849 -2.8026 11 1 5.8530 2.8138 -1.7946 12 6 6.0631 3.7445 -3.7041 13 7 5.5987 3.8314 -4.9314 14 14 7.5245 4.7845 -3.1825 15 1 8.7817 4.0397 -3.4469 16 1 7.5295 6.0535 -3.9539 17 1 7.4242 5.0874 -1.7322 18 6 2.0324 -0.7106 1.2304 19 6 2.0718 -2.0926 1.2622 20 6 2.5266 -2.7481 2.3914 21 6 2.9539 -2.0237 3.4872 22 6 2.9208 -0.6362 3.4561 23 7 3.3533 0.1017 4.5668 24 6 3.9117 -0.4038 5.6897 25 6 4.1856 0.6324 6.5158 26 6 3.7812 1.8102 5.8780 27 7 3.2877 1.4939 4.7078 28 6 2.4581 0.0192 2.3227 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.1109 -1.6562 -1.1950 33 1 3.5400 1.8343 -1.2167 34 1 4.6459 0.5362 -1.7268 35 1 4.5845 1.3988 -4.0513 36 1 3.4786 2.6965 -3.5403 37 1 6.0148 4.4359 -5.5657 38 1 1.7427 -2.6611 0.4050 39 1 2.5521 -3.8276 2.4151 40 1 3.3130 -2.5362 4.3675 41 1 4.1037 -1.4473 5.8915 42 1 4.6367 0.5625 7.4946 43 1 3.8659 2.8090 6.2803 44 1 2.4308 1.0985 2.2958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074972969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:26 Heat of formation + Delta-G solvation = 28.928675 kcal Electronic energy + Delta-G solvation = -27815.116051 eV Core-core repulsion = 23861.298916 eV Total energy + Delta-G solvation = -3953.817135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80361 -39.78587 -36.78203 -36.30065 -35.43359 -33.88997 -33.50227 -31.66816 -31.16075 -30.51278 -29.31841 -28.98327 -25.60800 -24.33758 -23.71679 -22.26333 -21.67636 -20.93824 -20.34922 -18.97359 -18.49855 -17.52510 -16.66896 -16.41523 -16.24841 -15.54611 -15.39454 -15.31374 -15.17080 -14.73783 -14.52954 -14.12746 -13.97560 -13.76364 -13.65294 -13.37591 -13.09382 -12.91452 -12.51730 -12.44743 -12.02758 -11.95110 -11.75534 -11.60007 -11.56735 -11.49410 -11.11389 -11.06475 -10.96788 -10.88746 -10.58076 -10.42402 -10.37159 -9.88072 -9.57782 -9.46464 -9.22402 -9.03499 -8.49472 -8.35897 -6.11740 -4.17065 0.50991 0.74303 0.96046 1.87267 2.07078 2.47916 3.07192 3.26978 3.33223 3.36375 3.42798 4.01871 4.23966 4.34029 4.38564 4.43294 4.54931 4.66614 4.69857 4.80901 4.88667 5.01368 5.09819 5.20153 5.23611 5.26321 5.32237 5.37664 5.54620 5.61363 5.64943 5.71704 5.75758 5.87836 5.91422 5.98983 6.19092 6.24118 6.33685 6.37811 6.49396 6.85851 7.02494 7.30470 7.31968 7.36551 7.81585 8.18425 8.86355 9.47744 10.99309 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.003280 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.704857 B = 8534.078187 C =11066.286605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.192 3.808 3 H 0.097 0.903 4 N -1.122 6.122 5 S 2.592 3.408 6 O -0.966 6.966 7 O -0.962 6.962 8 C -0.590 4.590 9 C 0.029 3.971 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.059 4.059 19 C -0.117 4.117 20 C -0.089 4.089 21 C -0.143 4.143 22 C 0.161 3.839 23 N -0.322 5.322 24 C 0.051 3.949 25 C -0.263 4.263 26 C 0.054 3.946 27 N -0.285 5.285 28 C -0.109 4.109 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.411 0.589 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.177 0.823 42 H 0.153 0.847 43 H 0.190 0.810 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -13.079 22.541 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.084 3.916 3 H 0.115 0.885 4 N -0.878 5.878 5 S 2.689 3.311 6 O -0.957 6.957 7 O -0.952 6.952 8 C -0.724 4.724 9 C -0.010 4.010 10 C -0.559 4.559 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.061 4.061 19 C -0.136 4.136 20 C -0.108 4.108 21 C -0.164 4.164 22 C 0.069 3.931 23 N -0.097 5.097 24 C -0.091 4.091 25 C -0.292 4.292 26 C -0.133 4.133 27 N -0.104 5.104 28 C -0.130 4.130 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.246 0.754 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.194 0.806 42 H 0.171 0.829 43 H 0.207 0.793 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.242 -12.458 20.401 25.285 hybrid contribution 1.840 0.019 1.685 2.495 sum -6.402 -12.439 22.085 26.143 Atomic orbital electron populations 1.22315 0.93521 1.02965 1.03664 1.19604 0.94994 0.95367 0.81611 0.88528 1.56040 1.82744 1.19301 1.29734 1.05633 0.77237 0.75098 0.73107 1.93556 1.84677 1.58600 1.58823 1.93546 1.47961 1.70246 1.83482 1.30460 1.16889 1.13402 1.11617 1.18955 0.98217 0.94201 0.89646 1.21002 1.14008 1.22921 0.98000 0.92080 1.25058 0.97508 0.96974 0.94898 1.69955 1.41093 1.37630 1.04183 0.86480 0.82492 0.79700 0.78692 1.20473 1.20972 1.19755 1.19899 0.97503 0.93921 0.94822 1.21020 1.00308 0.93738 0.98574 1.20928 0.97557 1.00076 0.92204 1.20783 1.04201 0.90901 1.00515 1.17485 0.99827 0.89858 0.85961 1.45923 1.46102 1.05126 1.12587 1.22625 0.98628 1.00659 0.87203 1.21617 1.12855 0.91441 1.03264 1.24122 0.97092 1.00312 0.91763 1.77532 1.23949 0.89001 1.19929 1.20769 0.99705 1.01276 0.91211 0.91984 0.91493 0.89969 0.75436 0.86403 0.86087 0.94851 0.94770 0.92537 0.85183 0.84780 0.85323 0.80614 0.82888 0.79309 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.50 37.15 0.35 -1.41 16 2 C 0.19 2.20 2.88 -69.08 -0.20 2.00 16 3 H 0.10 1.11 7.01 -51.93 -0.36 0.75 16 4 N -1.12 -14.01 5.31 -5.88 -0.03 -14.04 16 5 S 2.59 45.25 5.38 -107.50 -0.58 44.67 16 6 O -0.97 -19.71 18.08 -57.54 -1.04 -20.75 16 7 O -0.96 -19.22 17.11 -57.54 -0.98 -20.21 16 8 C -0.59 -11.32 5.90 37.16 0.22 -11.10 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 14 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.06 -0.62 4.95 -104.65 -0.52 -1.13 16 19 C -0.12 -1.02 9.16 -39.55 -0.36 -1.38 16 20 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 21 C -0.14 -1.17 9.46 -39.40 -0.37 -1.54 16 22 C 0.16 1.73 6.68 -83.59 -0.56 1.17 16 23 N -0.32 -3.60 3.80 -10.70 -0.04 -3.64 16 24 C 0.05 0.43 10.79 -17.10 -0.18 0.25 16 25 C -0.26 -2.10 10.80 -39.99 -0.43 -2.53 16 26 C 0.05 0.51 12.03 -17.33 -0.21 0.30 16 27 N -0.29 -3.54 11.88 30.64 0.36 -3.18 16 28 C -0.11 -1.24 9.28 -39.40 -0.37 -1.61 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.02 7.43 -51.93 -0.39 0.63 16 32 H 0.41 4.21 7.03 -34.47 -0.24 3.97 16 33 H 0.12 2.03 7.44 -51.92 -0.39 1.64 16 34 H 0.12 2.13 8.14 -51.92 -0.42 1.70 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.13 0.91 6.80 -52.49 -0.36 0.55 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.72 6.76 -52.49 -0.36 0.36 16 41 H 0.18 0.84 7.07 -52.49 -0.37 0.47 16 42 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.19 1.17 8.06 -52.48 -0.42 0.74 16 44 H 0.14 1.70 7.68 -52.49 -0.40 1.30 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -37.40 384.87 -10.16 -47.56 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.79 Total: 3.94 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -3.58 Total: -30.70 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 1.03 Total: -46.75 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -2.02 Total: -40.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 45.25 SS G_CDS: -0.58 Total: 44.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.40 -10.16 -47.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074972969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.486 kcal (2) G-P(sol) polarization free energy of solvation -37.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds