Wall clock time and date at job start Tue Mar 31 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47242 * 2 1 4 4 N 1.46499 * 109.47054 * 119.99789 * 2 1 3 5 5 S 1.65600 * 120.00217 * 265.00082 * 4 2 1 6 6 O 1.42097 * 104.27820 * 181.06741 * 5 4 2 7 7 O 1.42102 * 104.27742 * 308.92827 * 5 4 2 8 8 C 1.81400 * 104.44744 * 64.99567 * 5 4 2 9 9 C 1.53007 * 109.46939 * 179.97438 * 8 5 4 10 10 C 1.50706 * 109.46871 * 179.97438 * 9 8 5 11 11 H 1.07991 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99668 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00241 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00261 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47416 * 89.99710 * 14 12 10 16 16 H 1.48507 * 109.47341 * 210.00228 * 14 12 10 17 17 H 1.48500 * 109.47318 * 330.00040 * 14 12 10 18 18 C 1.50703 * 109.47283 * 239.99459 * 2 1 3 19 19 C 1.38299 * 119.96644 * 280.00389 * 18 2 1 20 20 C 1.38262 * 120.13274 * 179.97438 * 19 18 2 21 21 C 1.38146 * 120.06515 * 359.97404 * 20 19 18 22 22 C 1.38813 * 119.93212 * 0.02562 * 21 20 19 23 23 N 1.40185 * 120.06562 * 180.02562 * 22 21 20 24 24 C 1.35226 * 126.05243 * 4.99189 * 23 22 21 25 25 C 1.35325 * 107.71023 * 180.02562 * 24 23 22 26 26 C 1.39920 * 107.93281 * 0.02562 * 25 24 23 27 27 N 1.30876 * 108.24078 * 359.97438 * 26 25 24 28 28 C 1.38106 * 119.96546 * 100.23414 * 18 2 1 29 29 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47172 * 300.00318 * 1 2 3 31 31 H 1.09004 * 109.46383 * 60.00494 * 1 2 3 32 32 H 0.97001 * 120.00223 * 84.99455 * 4 2 1 33 33 H 1.09001 * 109.47554 * 300.00145 * 8 5 4 34 34 H 1.09000 * 109.47323 * 60.00487 * 8 5 4 35 35 H 1.08995 * 109.47036 * 299.99996 * 9 8 5 36 36 H 1.08995 * 109.46588 * 60.00589 * 9 8 5 37 37 H 0.97001 * 120.00677 * 179.97438 * 13 12 10 38 38 H 1.07995 * 119.93355 * 359.97438 * 19 18 2 39 39 H 1.07996 * 119.96839 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.03219 * 180.02562 * 21 20 19 41 41 H 1.08002 * 126.14274 * 0.29405 * 24 23 22 42 42 H 1.08003 * 126.02770 * 180.02562 * 25 24 23 43 43 H 1.07999 * 125.87887 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.03037 * 0.04704 * 28 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1772 2.5505 6 8 2.8605 -0.8028 3.4766 7 8 3.2875 1.1907 2.0751 8 6 0.8407 0.8990 3.0984 9 6 1.0751 1.7342 4.3588 10 6 -0.2304 2.3344 4.8136 11 1 -1.1365 2.1393 4.2594 12 6 -0.2678 3.1325 5.9372 13 7 -1.4070 3.6559 6.3345 14 14 1.2997 3.4704 6.8954 15 1 1.9568 4.6880 6.3561 16 1 0.9688 3.6797 8.3280 17 1 2.2197 2.3122 6.7641 18 6 2.0324 -0.7105 -1.2304 19 6 2.0664 -2.0927 -1.2644 20 6 2.5262 -2.7481 -2.3917 21 6 2.9525 -2.0236 -3.4879 22 6 2.9195 -0.6362 -3.4567 23 7 3.3510 0.1018 -4.5677 24 6 3.7316 -0.4065 -5.7617 25 6 4.0746 0.6309 -6.5601 26 6 3.8989 1.8122 -5.8311 27 7 3.4652 1.4962 -4.6374 28 6 2.4627 0.0193 -2.3210 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 2.1109 -1.6561 1.1950 33 1 0.4386 1.5354 2.3100 34 1 0.1314 0.1011 3.3184 35 1 1.4768 1.0975 5.1470 36 1 1.7844 2.5321 4.1392 37 1 -1.4334 4.2171 7.1252 38 1 1.7333 -2.6612 -0.4088 39 1 2.5520 -3.8275 -2.4152 40 1 3.3112 -2.5361 -4.3683 41 1 3.7532 -1.4521 -6.0311 42 1 4.4226 0.5594 -7.5801 43 1 4.0885 2.8125 -6.1915 44 1 2.4401 1.0987 -2.2921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074972971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:29 Heat of formation + Delta-G solvation = 33.456583 kcal Electronic energy + Delta-G solvation = -27599.057817 eV Core-core repulsion = 23645.437027 eV Total energy + Delta-G solvation = -3953.620790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85410 -39.82715 -36.87918 -36.42962 -35.58718 -33.98428 -33.55756 -31.72008 -31.52198 -30.56540 -29.36677 -29.05362 -26.00916 -24.38201 -23.76290 -22.30923 -21.33807 -20.95656 -20.39837 -19.10547 -18.56738 -17.72053 -16.95511 -16.55328 -16.31315 -15.65072 -15.56696 -15.38324 -15.21587 -14.80364 -14.31981 -14.17629 -14.03809 -13.88164 -13.74541 -13.56738 -13.14567 -12.99431 -12.81889 -12.48706 -12.10312 -12.04681 -11.87219 -11.75340 -11.71629 -11.54443 -11.29081 -11.24149 -11.10742 -10.94339 -10.64335 -10.45893 -10.19298 -9.90729 -9.54283 -9.51650 -9.26159 -9.21630 -8.66946 -8.40474 -6.17287 -4.18631 0.46529 0.60360 0.92566 1.82452 2.02169 2.42447 2.94987 3.26445 3.33810 3.37775 3.37977 3.98055 4.10661 4.28782 4.35345 4.36430 4.51922 4.57457 4.65432 4.77514 4.85716 4.95776 5.02374 5.13773 5.16086 5.18564 5.27477 5.34013 5.43569 5.50242 5.54914 5.56343 5.65939 5.81919 5.86485 5.94467 6.02776 6.18733 6.28594 6.29167 6.34864 6.80310 6.81220 6.90043 6.97398 7.26905 7.53739 8.35385 8.83624 9.42410 10.94976 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002327 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.612046 B =12029.399694 C =12635.472286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.185 3.815 3 H 0.105 0.895 4 N -1.119 6.119 5 S 2.588 3.412 6 O -0.965 6.965 7 O -0.964 6.964 8 C -0.584 4.584 9 C -0.007 4.007 10 C -0.519 4.519 11 H 0.078 0.922 12 C 0.071 3.929 13 N -0.895 5.895 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C -0.054 4.054 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.143 4.143 22 C 0.159 3.841 23 N -0.321 5.321 24 C 0.051 3.949 25 C -0.263 4.263 26 C 0.054 3.946 27 N -0.286 5.286 28 C -0.108 4.108 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.177 0.823 42 H 0.154 0.846 43 H 0.190 0.810 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 -12.948 -25.888 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.077 3.923 3 H 0.123 0.877 4 N -0.876 5.876 5 S 2.685 3.315 6 O -0.956 6.956 7 O -0.954 6.954 8 C -0.717 4.717 9 C -0.047 4.047 10 C -0.558 4.558 11 H 0.096 0.904 12 C -0.131 4.131 13 N -0.533 5.533 14 Si 0.695 3.305 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.186 1.186 18 C -0.056 4.056 19 C -0.137 4.137 20 C -0.108 4.108 21 C -0.164 4.164 22 C 0.067 3.933 23 N -0.097 5.097 24 C -0.091 4.091 25 C -0.292 4.292 26 C -0.133 4.133 27 N -0.104 5.104 28 C -0.128 4.128 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.194 0.806 42 H 0.171 0.829 43 H 0.207 0.793 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.960 -12.166 -24.209 28.240 hybrid contribution 0.342 -0.420 -0.514 0.747 sum 8.303 -12.587 -24.724 28.959 Atomic orbital electron populations 1.22485 0.93629 1.03571 1.03839 1.19708 0.94388 0.96339 0.81853 0.87669 1.55924 1.84420 1.19656 1.27632 1.05687 0.78245 0.74567 0.72992 1.93563 1.80482 1.59294 1.62228 1.93561 1.62301 1.60176 1.79330 1.30410 1.19190 1.11821 1.10265 1.19419 1.00241 0.94838 0.90176 1.20831 0.93047 1.30235 1.11655 0.90375 1.24985 0.96206 0.95032 0.96912 1.69877 1.25246 1.33012 1.25174 0.86931 0.84090 0.79753 0.79707 1.19662 1.20770 1.18633 1.19794 0.97415 0.93810 0.94606 1.21036 1.00298 0.93745 0.98627 1.20931 0.97570 1.00093 0.92213 1.20783 1.04230 0.90896 1.00493 1.17484 0.99768 0.89867 0.86163 1.45925 1.49446 1.04944 1.09395 1.22633 1.00107 1.00645 0.85755 1.21620 1.13814 0.91323 1.02432 1.24123 0.97851 1.00320 0.91052 1.77535 1.22952 0.88961 1.20993 1.20771 0.99432 1.01304 0.91313 0.91392 0.90460 0.90934 0.75310 0.85506 0.85303 0.94919 0.95342 0.92377 0.85134 0.84747 0.85307 0.80604 0.82877 0.79305 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.46 37.16 0.35 -1.33 16 2 C 0.18 2.03 3.01 -69.08 -0.21 1.82 16 3 H 0.11 1.24 7.34 -51.93 -0.38 0.85 16 4 N -1.12 -13.34 5.31 -5.88 -0.03 -13.37 16 5 S 2.59 42.88 5.44 -107.50 -0.58 42.29 16 6 O -0.97 -18.62 18.08 -57.54 -1.04 -19.66 16 7 O -0.96 -18.85 17.39 -57.54 -1.00 -19.85 16 8 C -0.58 -10.27 5.16 37.16 0.19 -10.07 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 10 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 11 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 14 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 18 C -0.05 -0.56 4.95 -104.65 -0.52 -1.07 16 19 C -0.12 -0.99 9.15 -39.55 -0.36 -1.36 16 20 C -0.09 -0.64 10.04 -39.61 -0.40 -1.04 16 21 C -0.14 -1.12 9.46 -39.40 -0.37 -1.49 16 22 C 0.16 1.66 6.68 -83.60 -0.56 1.10 16 23 N -0.32 -3.43 3.80 -10.70 -0.04 -3.47 16 24 C 0.05 0.40 10.79 -17.09 -0.18 0.21 16 25 C -0.26 -1.92 10.81 -39.99 -0.43 -2.35 16 26 C 0.05 0.47 12.03 -17.33 -0.21 0.26 16 27 N -0.29 -3.39 11.88 30.64 0.36 -3.02 16 28 C -0.11 -1.21 9.28 -39.40 -0.37 -1.58 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.78 5.78 -51.93 -0.30 0.48 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.41 3.98 7.04 -34.47 -0.24 3.74 16 33 H 0.13 1.99 6.77 -51.92 -0.35 1.64 16 34 H 0.13 2.03 8.14 -51.92 -0.42 1.60 16 35 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 36 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.13 0.86 6.81 -52.49 -0.36 0.51 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.66 6.77 -52.49 -0.36 0.31 16 41 H 0.18 0.73 7.07 -52.49 -0.37 0.36 16 42 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.19 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.14 1.69 7.68 -52.49 -0.40 1.28 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -37.43 379.00 -9.78 -47.21 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.65 Total: 3.33 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -3.61 Total: -29.84 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 1.07 Total: -45.98 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -2.04 Total: -39.50 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 42.88 SS G_CDS: -0.58 Total: 42.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.43 -9.78 -47.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074972971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.667 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds