Wall clock time and date at job start Tue Mar 31 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47242 * 2 1 4 4 N 1.46499 * 109.47054 * 119.99789 * 2 1 3 5 5 S 1.65600 * 120.00217 * 265.00082 * 4 2 1 6 6 O 1.42097 * 104.27820 * 181.06741 * 5 4 2 7 7 O 1.42102 * 104.27742 * 308.92827 * 5 4 2 8 8 C 1.81400 * 104.44744 * 64.99567 * 5 4 2 9 9 C 1.53007 * 109.46939 * 179.97438 * 8 5 4 10 10 C 1.50706 * 109.46871 * 179.97438 * 9 8 5 11 11 H 1.07991 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99668 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00241 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00261 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47416 * 89.99710 * 14 12 10 16 16 H 1.48507 * 109.47341 * 210.00228 * 14 12 10 17 17 H 1.48500 * 109.47318 * 330.00040 * 14 12 10 18 18 C 1.50703 * 109.47283 * 239.99459 * 2 1 3 19 19 C 1.38299 * 119.96644 * 280.00389 * 18 2 1 20 20 C 1.38262 * 120.13274 * 179.97438 * 19 18 2 21 21 C 1.38146 * 120.06515 * 359.97404 * 20 19 18 22 22 C 1.38813 * 119.93212 * 0.02562 * 21 20 19 23 23 N 1.40185 * 120.06562 * 180.02562 * 22 21 20 24 24 C 1.35226 * 126.05243 * 4.99189 * 23 22 21 25 25 C 1.35325 * 107.71023 * 180.02562 * 24 23 22 26 26 C 1.39920 * 107.93281 * 0.02562 * 25 24 23 27 27 N 1.30876 * 108.24078 * 359.97438 * 26 25 24 28 28 C 1.38106 * 119.96546 * 100.23414 * 18 2 1 29 29 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47172 * 300.00318 * 1 2 3 31 31 H 1.09004 * 109.46383 * 60.00494 * 1 2 3 32 32 H 0.97001 * 120.00223 * 84.99455 * 4 2 1 33 33 H 1.09001 * 109.47554 * 300.00145 * 8 5 4 34 34 H 1.09000 * 109.47323 * 60.00487 * 8 5 4 35 35 H 1.08995 * 109.47036 * 299.99996 * 9 8 5 36 36 H 1.08995 * 109.46588 * 60.00589 * 9 8 5 37 37 H 0.97001 * 120.00677 * 179.97438 * 13 12 10 38 38 H 1.07995 * 119.93355 * 359.97438 * 19 18 2 39 39 H 1.07996 * 119.96839 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.03219 * 180.02562 * 21 20 19 41 41 H 1.08002 * 126.14274 * 0.29405 * 24 23 22 42 42 H 1.08003 * 126.02770 * 180.02562 * 25 24 23 43 43 H 1.07999 * 125.87887 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.03037 * 0.04704 * 28 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1772 2.5505 6 8 2.8605 -0.8028 3.4766 7 8 3.2875 1.1907 2.0751 8 6 0.8407 0.8990 3.0984 9 6 1.0751 1.7342 4.3588 10 6 -0.2304 2.3344 4.8136 11 1 -1.1365 2.1393 4.2594 12 6 -0.2678 3.1325 5.9372 13 7 -1.4070 3.6559 6.3345 14 14 1.2997 3.4704 6.8954 15 1 1.9568 4.6880 6.3561 16 1 0.9688 3.6797 8.3280 17 1 2.2197 2.3122 6.7641 18 6 2.0324 -0.7105 -1.2304 19 6 2.0664 -2.0927 -1.2644 20 6 2.5262 -2.7481 -2.3917 21 6 2.9525 -2.0236 -3.4879 22 6 2.9195 -0.6362 -3.4567 23 7 3.3510 0.1018 -4.5677 24 6 3.7316 -0.4065 -5.7617 25 6 4.0746 0.6309 -6.5601 26 6 3.8989 1.8122 -5.8311 27 7 3.4652 1.4962 -4.6374 28 6 2.4627 0.0193 -2.3210 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 2.1109 -1.6561 1.1950 33 1 0.4386 1.5354 2.3100 34 1 0.1314 0.1011 3.3184 35 1 1.4768 1.0975 5.1470 36 1 1.7844 2.5321 4.1392 37 1 -1.4334 4.2171 7.1252 38 1 1.7333 -2.6612 -0.4088 39 1 2.5520 -3.8275 -2.4152 40 1 3.3112 -2.5361 -4.3683 41 1 3.7532 -1.4521 -6.0311 42 1 4.4226 0.5594 -7.5801 43 1 4.0885 2.8125 -6.1915 44 1 2.4401 1.0987 -2.2921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074972971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:28 Heat of formation + Delta-G solvation = 6.884456 kcal Electronic energy + Delta-G solvation = -27600.210071 eV Core-core repulsion = 23645.437027 eV Total energy + Delta-G solvation = -3954.773044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.47468 -40.51499 -38.24438 -37.38979 -37.05049 -35.90263 -34.22539 -33.48859 -32.47200 -31.25131 -30.12170 -29.74023 -27.87786 -25.10293 -24.46607 -23.17513 -22.95938 -21.64805 -21.09224 -20.37262 -19.45973 -19.25126 -18.45769 -17.41482 -17.14970 -17.04389 -16.49799 -16.31957 -16.27780 -15.95267 -15.70264 -15.30199 -14.85165 -14.81884 -14.74398 -14.55100 -14.32038 -13.92778 -13.71780 -13.66777 -13.30843 -13.26021 -13.17392 -13.06844 -13.01875 -12.81700 -12.72069 -12.46402 -12.23664 -12.01566 -11.86532 -11.71446 -11.62773 -11.39569 -11.24434 -10.84081 -10.57348 -10.13847 -9.91109 -9.04707 -8.36061 -6.41242 -0.75592 -0.16232 0.24340 1.20412 1.31675 1.33691 1.42267 1.43359 1.75560 1.85158 2.29454 2.70940 2.73015 2.97985 3.19041 3.35088 3.66564 3.81948 3.88444 3.92091 4.03513 4.06948 4.11985 4.16309 4.23270 4.35083 4.38975 4.54200 4.56221 4.74249 4.75191 4.81117 4.93523 5.02893 5.04890 5.08079 5.10143 5.22396 5.30995 5.35985 5.47667 5.50435 5.66555 5.76243 6.07574 6.17471 6.21410 6.64136 6.64934 7.22946 8.79252 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002327 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.612046 B =12029.399694 C =12635.472286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.181 3.819 3 H 0.090 0.910 4 N -1.100 6.100 5 S 2.618 3.382 6 O -0.989 6.989 7 O -0.994 6.994 8 C -0.588 4.588 9 C -0.018 4.018 10 C -0.523 4.523 11 H 0.052 0.948 12 C 0.013 3.987 13 N -0.939 5.939 14 Si 0.923 3.077 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.249 1.249 18 C -0.064 4.064 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.138 4.138 22 C 0.140 3.860 23 N -0.337 5.337 24 C 0.048 3.952 25 C -0.266 4.266 26 C 0.047 3.953 27 N -0.343 5.343 28 C -0.133 4.133 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.426 0.574 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.269 0.731 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.160 0.840 41 H 0.213 0.787 42 H 0.182 0.818 43 H 0.212 0.788 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.820 -15.670 -27.780 33.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.074 3.926 3 H 0.108 0.892 4 N -0.862 5.862 5 S 2.715 3.285 6 O -0.980 6.980 7 O -0.984 6.984 8 C -0.719 4.719 9 C -0.057 4.057 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.186 4.186 13 N -0.579 5.579 14 Si 0.746 3.254 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.173 1.173 18 C -0.067 4.067 19 C -0.142 4.142 20 C -0.099 4.099 21 C -0.158 4.158 22 C 0.048 3.952 23 N -0.113 5.113 24 C -0.094 4.094 25 C -0.294 4.294 26 C -0.139 4.139 27 N -0.162 5.162 28 C -0.154 4.154 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.265 0.735 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.169 0.831 39 H 0.188 0.812 40 H 0.177 0.823 41 H 0.230 0.770 42 H 0.200 0.800 43 H 0.229 0.771 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.241 -14.895 -26.105 31.445 hybrid contribution -0.096 0.375 -0.109 0.402 sum 9.145 -14.521 -26.214 31.332 Atomic orbital electron populations 1.22478 0.92386 1.04765 1.03736 1.19791 0.95358 0.95690 0.81752 0.89242 1.55428 1.84155 1.20190 1.26381 1.04519 0.77123 0.73795 0.73087 1.93523 1.80818 1.59791 1.63828 1.93527 1.63211 1.61687 1.79992 1.30401 1.21039 1.12150 1.08336 1.19387 0.97990 0.95592 0.92765 1.21159 0.94080 1.29839 1.11155 0.92936 1.25854 0.99291 0.95165 0.98261 1.70002 1.27428 1.34349 1.26125 0.86056 0.80501 0.80251 0.78613 1.18769 1.19946 1.17300 1.19691 0.98461 0.94742 0.93766 1.21337 1.00043 0.92868 0.99973 1.21368 0.95685 1.01767 0.91111 1.21181 1.03101 0.89699 1.01826 1.17797 1.00252 0.91083 0.86054 1.46076 1.50240 1.04679 1.10320 1.23352 0.98845 1.02534 0.84659 1.22039 1.13318 0.90494 1.03569 1.24689 0.96626 1.02083 0.90516 1.77482 1.25312 0.90458 1.22954 1.20709 1.01413 1.00510 0.92772 0.89544 0.91262 0.90332 0.73543 0.84024 0.83425 0.94872 0.95264 0.92176 0.83141 0.81222 0.82266 0.77018 0.80034 0.77136 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 9.46 71.98 0.68 -2.48 16 2 C 0.18 3.90 3.01 44.25 0.13 4.03 16 3 H 0.09 2.20 7.34 -2.39 -0.02 2.18 16 4 N -1.10 -24.73 5.31 -172.52 -0.92 -25.64 16 5 S 2.62 84.71 5.44 -56.49 -0.31 84.40 16 6 O -0.99 -36.93 18.08 -127.65 -2.31 -39.23 16 7 O -0.99 -38.83 17.39 -127.65 -2.22 -41.05 16 8 C -0.59 -20.35 5.16 71.98 0.37 -19.98 16 9 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 10 C -0.52 -29.25 9.66 25.60 0.25 -29.01 16 11 H 0.05 3.11 7.99 -2.92 -0.02 3.09 16 12 C 0.01 0.74 5.47 84.65 0.46 1.20 16 13 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 14 Si 0.92 44.03 27.47 68.60 1.88 45.91 16 15 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 18 C -0.06 -1.28 4.95 -19.88 -0.10 -1.37 16 19 C -0.12 -1.75 9.15 22.29 0.20 -1.55 16 20 C -0.08 -0.86 10.04 22.25 0.22 -0.64 16 21 C -0.14 -1.75 9.46 22.39 0.21 -1.54 16 22 C 0.14 2.83 6.68 38.09 0.25 3.08 16 23 N -0.34 -7.05 3.80 -187.76 -0.71 -7.76 16 24 C 0.05 0.64 10.79 83.50 0.90 1.55 16 25 C -0.27 -3.39 10.81 22.00 0.24 -3.15 16 26 C 0.05 0.81 12.03 85.24 1.03 1.84 16 27 N -0.34 -8.42 11.88 -56.97 -0.68 -9.10 16 28 C -0.13 -3.09 9.28 22.39 0.21 -2.88 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.36 5.78 -2.39 -0.01 1.34 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.43 7.24 7.04 -96.75 -0.68 6.56 16 33 H 0.14 4.43 6.77 -2.39 -0.02 4.41 16 34 H 0.15 4.49 8.14 -2.39 -0.02 4.47 16 35 H 0.03 1.53 7.20 -2.39 -0.02 1.51 16 36 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.15 1.44 6.81 -2.91 -0.02 1.42 16 39 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.16 0.94 6.77 -2.91 -0.02 0.92 16 41 H 0.21 0.96 7.07 -2.91 -0.02 0.94 16 42 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.12 3.17 7.68 -2.91 -0.02 3.15 16 Total: -1.00 -83.59 379.00 0.52 -83.07 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.30 Total: 18.38 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 5.18 Total: -51.63 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -2.01 Total: -99.85 kcal Atomic # 8 Polarization: -75.76 SS G_CDS: -4.53 Total: -80.29 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: 84.71 SS G_CDS: -0.31 Total: 84.40 kcal Total: -83.59 0.52 -83.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074972971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.951 kcal (2) G-P(sol) polarization free energy of solvation -83.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds