Wall clock time and date at job start Tue Mar 31 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39975 * 120.22129 * 152.09969 * 3 2 1 5 5 F 1.35102 * 120.07497 * 359.97438 * 4 3 2 6 6 C 1.38111 * 119.85304 * 179.97438 * 4 3 2 7 7 C 1.38463 * 120.31622 * 0.02562 * 6 4 3 8 8 C 1.38079 * 120.46128 * 359.97438 * 7 6 4 9 9 C 1.38830 * 120.13504 * 0.28003 * 8 7 6 10 10 N 1.39032 * 120.15664 * 179.72094 * 9 8 7 11 11 C 1.46948 * 110.99917 * 63.80007 * 10 9 8 12 12 C 1.53053 * 109.36661 * 176.80933 * 11 10 9 13 13 N 1.46956 * 109.36414 * 58.39798 * 12 11 10 14 14 C 1.46901 * 111.00160 * 176.81547 * 13 12 11 15 15 C 1.53000 * 109.46953 * 313.80029 * 14 13 12 16 16 C 1.52999 * 109.47124 * 180.02562 * 15 14 13 17 17 S 1.80994 * 109.47372 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00393 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99470 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00176 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00331 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99826 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47230 * 90.00051 * 22 20 18 24 24 H 1.48498 * 109.46913 * 210.00146 * 22 20 18 25 25 H 1.48508 * 109.47181 * 329.99971 * 22 20 18 26 26 C 1.46962 * 110.88103 * 300.68227 * 13 12 11 27 27 C 1.46956 * 111.00288 * 299.99686 * 10 9 8 28 28 H 1.08007 * 119.84455 * 180.02562 * 6 4 3 29 29 H 1.08004 * 119.76761 * 180.02562 * 7 6 4 30 30 H 1.08002 * 119.92963 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.49303 * 296.77510 * 11 10 9 32 32 H 1.08998 * 109.49328 * 56.84622 * 11 10 9 33 33 H 1.09004 * 109.49203 * 298.43688 * 12 11 10 34 34 H 1.08996 * 109.51369 * 178.37619 * 12 11 10 35 35 H 1.08997 * 109.47206 * 73.80321 * 14 13 12 36 36 H 1.09004 * 109.46774 * 193.80347 * 14 13 12 37 37 H 1.09008 * 109.46825 * 299.99795 * 15 14 13 38 38 H 1.08996 * 109.47405 * 59.99942 * 15 14 13 39 39 H 1.09004 * 109.47203 * 300.00122 * 16 15 14 40 40 H 1.09004 * 109.47433 * 59.99902 * 16 15 14 41 41 H 0.96991 * 120.00354 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.48953 * 299.35547 * 26 13 12 43 43 H 1.09004 * 109.48805 * 179.28088 * 26 13 12 44 44 H 1.09006 * 109.48675 * 303.15954 * 27 10 9 45 45 H 1.09005 * 109.48875 * 63.19815 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2721 1.0699 -0.5660 5 9 2.6022 2.1064 -1.1156 6 6 4.6532 1.0629 -0.5613 7 6 5.3449 0.0029 0.0001 8 6 4.6635 -1.0585 0.5619 9 6 3.2753 -1.0736 0.5629 10 7 2.5888 -2.1448 1.1233 11 6 2.8500 -2.2408 2.5662 12 6 2.0165 -3.3798 3.1582 13 7 2.3581 -4.6375 2.4792 14 6 1.6327 -5.7694 3.0713 15 6 1.7248 -5.6923 4.5966 16 6 0.9698 -6.8715 5.2134 17 16 1.0793 -6.7808 7.0177 18 6 0.1519 -8.2143 7.4531 19 1 -0.2763 -8.8357 6.6804 20 6 -0.0275 -8.5456 8.7890 21 7 0.4947 -7.7886 9.7307 22 14 -1.0102 -10.0658 9.2504 23 1 -0.0997 -11.2354 9.3398 24 1 -1.6688 -9.8496 10.5637 25 1 -2.0434 -10.3207 8.2145 26 6 2.0968 -4.5415 1.0362 27 6 2.9304 -3.4025 0.4443 28 1 5.1963 1.8882 -0.9977 29 1 6.4249 0.0068 -0.0008 30 1 5.2117 -1.8811 0.9971 31 1 3.9086 -2.4410 2.7316 32 1 2.5774 -1.3021 3.0485 33 1 0.9569 -3.1666 3.0170 34 1 2.2301 -3.4719 4.2231 35 1 0.5866 -5.7292 2.7680 36 1 2.0752 -6.7044 2.7274 37 1 2.7710 -5.7326 4.9000 38 1 1.2825 -4.7574 4.9406 39 1 -0.0764 -6.8318 4.9100 40 1 1.4125 -7.8064 4.8694 41 1 0.3690 -8.0199 10.6642 42 1 1.0383 -4.3413 0.8709 43 1 2.3695 -5.4803 0.5540 44 1 2.7164 -3.3106 -0.6206 45 1 3.9901 -3.6157 0.5852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074980502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:27 Heat of formation + Delta-G solvation = 3.656825 kcal Electronic energy + Delta-G solvation = -26895.096024 eV Core-core repulsion = 22952.555809 eV Total energy + Delta-G solvation = -3942.540215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.132 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.10995 -41.49804 -39.58628 -37.55361 -37.02726 -34.62682 -34.09697 -32.30558 -31.99376 -30.87967 -28.30996 -27.70743 -25.50161 -24.88926 -24.72107 -23.29581 -21.98566 -20.74406 -20.16265 -19.56267 -18.60581 -17.76765 -17.17967 -16.92297 -16.90494 -16.53215 -16.34204 -16.09534 -16.03035 -15.91674 -15.62124 -15.25518 -14.97783 -14.76998 -14.67447 -14.36452 -14.31683 -13.81212 -13.67529 -13.37423 -13.26659 -13.22610 -12.94608 -12.92746 -12.86188 -12.68512 -12.60458 -12.43993 -12.29555 -12.03868 -11.84222 -11.62639 -11.29646 -11.14973 -10.32697 -10.01895 -9.78377 -9.67525 -9.34738 -8.66979 -8.38371 -6.14262 -0.42844 0.01291 1.30511 1.38364 1.47510 1.59083 1.73497 1.86705 2.27234 2.42606 2.61258 2.75496 2.85520 2.95774 3.22260 3.31246 3.74298 3.89054 3.93053 3.99947 4.00556 4.13255 4.19237 4.21180 4.27170 4.29626 4.38527 4.44197 4.50330 4.55632 4.69241 4.71036 4.79090 4.81469 4.87175 4.92832 5.00517 5.03650 5.18225 5.22229 5.26478 5.28937 5.38818 5.60902 5.72661 5.94568 6.06617 6.17126 6.19028 6.42547 7.03962 8.70960 Molecular weight = 349.13amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.001688 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.535942 B =16582.412272 C =16732.202847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.281 3.719 3 C -0.070 4.070 4 C 0.138 3.862 5 F -0.140 7.140 6 C -0.145 4.145 7 C -0.030 4.030 8 C -0.152 4.152 9 C 0.164 3.836 10 N -0.535 5.535 11 C 0.072 3.928 12 C 0.048 3.952 13 N -0.533 5.533 14 C 0.070 3.930 15 C -0.087 4.087 16 C -0.089 4.089 17 S -0.194 6.194 18 C -0.539 4.539 19 H 0.072 0.928 20 C 0.015 3.985 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.265 1.265 26 C 0.055 3.945 27 C 0.070 3.930 28 H 0.175 0.825 29 H 0.182 0.818 30 H 0.158 0.842 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.272 0.728 42 H 0.024 0.976 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.711 16.296 -24.867 33.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.033 4.033 3 C -0.075 4.075 4 C 0.115 3.885 5 F -0.119 7.119 6 C -0.163 4.163 7 C -0.049 4.049 8 C -0.171 4.171 9 C 0.066 3.934 10 N -0.258 5.258 11 C -0.054 4.054 12 C -0.080 4.080 13 N -0.258 5.258 14 C -0.059 4.059 15 C -0.125 4.125 16 C -0.238 4.238 17 S 0.034 5.966 18 C -0.687 4.687 19 H 0.090 0.910 20 C -0.190 4.190 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.189 1.189 26 C -0.073 4.073 27 C -0.056 4.056 28 H 0.192 0.808 29 H 0.199 0.801 30 H 0.176 0.824 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.432 17.095 -24.013 32.820 hybrid contribution -1.726 -1.527 -0.162 2.310 sum 12.706 15.568 -24.175 31.437 Atomic orbital electron populations 1.81207 1.13540 1.09168 1.09982 1.25591 0.92795 0.92291 0.92640 1.16170 0.83777 0.98111 1.09487 1.17789 0.91128 0.83545 0.95989 1.91535 1.81239 1.56112 1.82989 1.21499 0.89827 1.02396 1.02577 1.21581 1.02606 0.89889 0.90786 1.21998 0.92410 1.01358 1.01381 1.18490 0.91064 0.89880 0.93929 1.59368 1.58331 1.03547 1.04539 1.22213 0.99899 0.98278 0.84977 1.22291 0.97250 0.89049 0.99414 1.62311 1.56980 1.03123 1.03375 1.22024 0.96023 0.94736 0.93117 1.21297 1.00618 0.96295 0.94313 1.23159 1.01959 1.01686 0.97008 1.84576 1.71858 1.38243 1.01881 1.23041 1.38677 1.11677 0.95306 0.91031 1.26064 0.96770 1.00965 0.95218 1.70144 1.44008 1.39319 1.00804 0.85025 0.78210 0.77382 0.77846 1.19106 1.19921 1.18912 1.22240 0.97821 0.99506 0.87782 1.22264 0.99534 0.85729 0.98034 0.80781 0.80072 0.82432 0.90948 0.90016 0.96040 0.89256 0.95356 0.89434 0.90759 0.91849 0.92598 0.91602 0.91948 0.95806 0.88222 0.89188 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.96 18.54 19.00 0.35 -13.61 16 2 C 0.28 6.85 14.46 88.33 1.28 8.12 16 3 C -0.07 -1.15 5.76 -21.09 -0.12 -1.27 16 4 C 0.14 1.71 7.28 22.66 0.16 1.88 16 5 F -0.14 -2.32 16.81 44.97 0.76 -1.56 16 6 C -0.14 -0.65 10.00 22.29 0.22 -0.42 16 7 C -0.03 -0.04 10.02 22.29 0.22 0.18 16 8 C -0.15 -0.87 8.62 22.37 0.19 -0.67 16 9 C 0.16 2.10 4.71 38.67 0.18 2.28 16 10 N -0.54 -8.74 4.05 -694.03 -2.81 -11.55 16 11 C 0.07 1.20 5.35 86.31 0.46 1.66 16 12 C 0.05 1.06 4.93 86.31 0.43 1.48 16 13 N -0.53 -11.31 4.86 -895.70 -4.35 -15.67 16 14 C 0.07 1.75 5.28 86.30 0.46 2.20 16 15 C -0.09 -2.70 4.48 30.59 0.14 -2.56 16 16 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 17 S -0.19 -10.34 21.44 -56.49 -1.21 -11.55 16 18 C -0.54 -31.37 9.50 67.95 0.65 -30.73 16 19 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 20 C 0.01 0.85 5.49 84.86 0.47 1.32 16 21 N -0.91 -54.88 13.22 21.65 0.29 -54.60 16 22 Si 0.99 44.20 29.55 68.60 2.03 46.23 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.05 0.96 5.58 86.31 0.48 1.45 16 27 C 0.07 0.95 5.31 86.31 0.46 1.41 16 28 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 29 H 0.18 -1.00 8.06 -2.91 -0.02 -1.02 16 30 H 0.16 0.45 7.04 -2.91 -0.02 0.43 16 31 H 0.07 0.97 7.43 -2.39 -0.02 0.95 16 32 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 33 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.09 2.08 5.99 -2.39 -0.01 2.07 16 35 H 0.03 0.74 8.08 -2.39 -0.02 0.72 16 36 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 2.34 8.14 -2.38 -0.02 2.33 16 38 H 0.06 2.04 6.26 -2.39 -0.01 2.02 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.09 1.09 8.13 -2.38 -0.02 1.07 16 45 H 0.07 0.75 7.23 -2.38 -0.02 0.73 16 Total: -1.00 -75.32 389.74 2.13 -73.19 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.00 Total: 5.92 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 6.08 Total: -16.81 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -6.52 Total: -95.42 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.76 Total: -1.56 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -10.34 SS G_CDS: -1.21 Total: -11.55 kcal Total: -75.32 2.13 -73.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.847 kcal (2) G-P(sol) polarization free energy of solvation -75.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds