Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99968 * 2 1 4 4 C 1.53001 * 109.47036 * 66.04657 * 3 2 1 5 5 C 1.52998 * 109.46688 * 179.97438 * 4 3 2 6 6 S 1.81009 * 109.46626 * 180.02562 * 5 4 3 7 7 C 1.76204 * 99.99790 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99780 * 359.97438 * 7 6 5 9 9 C 1.38798 * 119.99794 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99990 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99649 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47006 * 59.99629 * 11 9 7 13 13 H 1.48502 * 109.46566 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47134 * 299.99131 * 11 9 7 15 15 C 1.46899 * 110.99763 * 236.04589 * 2 1 3 16 16 C 1.50700 * 109.47256 * 293.95312 * 15 2 1 17 17 C 1.33399 * 125.19268 * 90.03099 * 16 15 2 18 18 C 1.38470 * 114.90859 * 179.77238 * 17 16 15 19 19 Br 1.89098 * 122.54493 * 180.24710 * 18 17 16 20 20 C 1.33430 * 114.90709 * 0.42675 * 18 17 16 21 21 S 1.75877 * 125.19613 * 270.02474 * 16 15 2 22 22 H 1.08999 * 109.47238 * 183.95315 * 1 2 3 23 23 H 1.08994 * 109.47126 * 303.95563 * 1 2 3 24 24 H 1.09007 * 109.47281 * 63.95090 * 1 2 3 25 25 H 1.08998 * 109.46832 * 186.05081 * 3 2 1 26 26 H 1.09000 * 109.47291 * 306.04598 * 3 2 1 27 27 H 1.09000 * 109.46939 * 299.99773 * 4 3 2 28 28 H 1.09000 * 109.47129 * 59.99841 * 4 3 2 29 29 H 1.09000 * 109.47351 * 299.99651 * 5 4 3 30 30 H 1.09000 * 109.47359 * 60.00112 * 5 4 3 31 31 H 0.97005 * 120.00087 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.46774 * 173.95231 * 15 2 1 33 33 H 1.09000 * 109.47440 * 53.95894 * 15 2 1 34 34 H 1.07995 * 122.54360 * 359.97438 * 17 16 15 35 35 H 1.08002 * 125.20586 * 179.86604 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 16 1.7503 4.2969 2.8784 7 6 2.4830 5.8773 2.6133 8 1 3.0020 6.0837 1.6890 9 6 2.3939 6.8566 3.5929 10 7 1.7617 6.6048 4.7196 11 14 3.1713 8.5319 3.3122 12 1 2.5627 9.1655 2.1149 13 1 2.9366 9.3916 4.5000 14 1 4.6318 8.3703 3.0984 15 6 1.9954 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 6 0.5241 -2.7948 -1.4327 18 6 0.4132 -4.1488 -1.1647 19 35 -1.0719 -5.1779 -1.7228 20 6 1.4319 -4.6714 -0.4796 21 16 2.6217 -3.4198 -0.1452 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3634 0.4513 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 0.5472 2.0845 1.4265 28 1 2.0658 1.5015 2.1492 29 1 3.2646 3.4582 1.2105 30 1 1.7463 4.0418 0.4875 31 1 1.6992 7.2893 5.4041 32 1 3.0797 -0.6611 -1.1756 33 1 1.5611 -0.3872 -2.0628 34 1 -0.2312 -2.2462 -1.9756 35 1 1.5155 -5.7057 -0.1802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = 27.297827 kcal Electronic energy + Delta-G solvation = -17058.150046 eV Core-core repulsion = 14162.028682 eV Total energy + Delta-G solvation = -2896.121364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 348.987 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.94534 -37.38245 -33.36339 -32.42213 -31.49501 -29.89038 -27.58376 -26.50380 -25.50551 -23.71917 -21.97401 -20.62774 -19.53447 -17.59265 -17.43625 -16.04550 -15.83857 -15.51646 -14.80103 -14.59976 -14.30415 -13.91221 -13.61275 -13.42849 -12.97680 -12.87978 -12.68041 -12.14616 -11.86666 -11.73257 -11.54424 -11.31631 -11.15460 -11.04945 -10.98908 -10.80141 -10.63899 -10.57004 -10.29647 -9.55992 -9.12046 -9.04669 -8.70683 -8.44420 -8.29487 -6.52051 -6.21975 -3.92292 0.49303 0.81981 1.38935 1.98028 2.07631 3.21611 3.23373 3.28034 3.53597 3.93230 4.23317 4.38570 4.68714 4.85637 4.99461 5.10669 5.13952 5.20611 5.31618 5.39101 5.48367 5.52901 5.60078 5.69516 5.72286 5.84620 5.86199 5.95150 6.05565 6.34026 6.57664 6.72796 6.91169 6.97432 7.60668 8.36911 9.24044 10.86112 Molecular weight = 348.99amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.001715 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.470780 B =16321.108705 C =16631.950281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.060 3.940 4 C -0.094 4.094 5 C -0.113 4.113 6 S -0.132 6.132 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.121 3.879 16 C -0.153 4.153 17 C -0.124 4.124 18 C -0.098 4.098 19 Br -0.035 7.035 20 C -0.195 4.195 21 S 0.171 5.829 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.025 0.975 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.268 0.732 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.145 0.855 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -26.330 -15.359 30.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.069 4.069 4 C -0.132 4.132 5 C -0.262 4.262 6 S 0.096 5.904 7 C -0.665 4.665 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.745 3.255 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.199 1.199 15 C -0.009 4.009 16 C -0.272 4.272 17 C -0.155 4.155 18 C -0.190 4.190 19 Br 0.048 6.952 20 C -0.334 4.334 21 S 0.435 5.565 22 H 0.087 0.913 23 H 0.097 0.903 24 H 0.044 0.956 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.355 -27.203 -13.298 30.371 hybrid contribution -0.221 2.053 -2.496 3.240 sum -2.575 -25.150 -15.794 29.810 Atomic orbital electron populations 1.22532 0.87046 1.02369 1.01184 1.61996 1.08517 1.14349 1.41182 1.22228 0.99963 0.86492 0.98173 1.21285 1.01390 0.94055 0.96496 1.23230 1.02273 0.97469 1.03209 1.84648 1.74384 1.13287 1.18033 1.22648 1.40621 0.97554 1.05681 0.91046 1.25016 0.95242 0.99024 0.94538 1.70012 1.39982 1.34438 1.06080 0.86227 0.79583 0.81908 0.77823 1.19971 1.20822 1.19936 1.20565 1.00818 0.86393 0.93075 1.24398 0.98767 0.99805 1.04267 1.19880 0.98911 0.92609 1.04143 1.20632 0.96333 0.95197 1.06872 1.96713 1.38920 1.69793 1.89771 1.25753 0.98179 1.04377 1.05076 1.84509 1.21040 0.97386 1.53577 0.91348 0.90294 0.95599 0.90722 0.94662 0.91536 0.90705 0.92137 0.92365 0.92258 0.89354 0.92592 0.83712 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.06 60.06 0.54 0.73 16 2 N -0.54 -6.20 4.75 -244.37 -1.16 -7.36 16 3 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 4 C -0.09 -1.50 5.15 -26.73 -0.14 -1.64 16 5 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 6 S -0.13 -3.45 21.44 -107.50 -2.30 -5.76 16 7 C -0.52 -14.83 9.50 30.94 0.29 -14.54 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 10 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 11 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.12 1.14 5.46 -4.98 -0.03 1.11 16 16 C -0.15 -1.42 5.43 -36.00 -0.20 -1.62 16 17 C -0.12 -1.13 8.45 -41.19 -0.35 -1.48 16 18 C -0.10 -0.88 6.17 -41.18 -0.25 -1.13 16 19 Br -0.04 -0.30 33.87 -68.01 -2.30 -2.60 16 20 C -0.20 -1.59 11.05 29.05 0.32 -1.27 16 21 S 0.17 1.46 23.33 -107.50 -2.51 -1.05 16 22 H 0.07 0.72 6.30 -51.93 -0.33 0.39 16 23 H 0.08 0.94 6.30 -51.93 -0.33 0.62 16 24 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 26 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.07 1.08 6.47 -51.93 -0.34 0.75 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.06 0.49 8.12 -51.93 -0.42 0.06 16 34 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -30.62 339.85 -11.89 -42.51 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.74 Total: -2.86 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 0.29 Total: -19.19 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: -0.43 Total: -32.68 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -4.81 Total: -6.81 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.30 Total: -2.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.62 -11.89 -42.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.806 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds