Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99968 * 2 1 4 4 C 1.53001 * 109.47036 * 66.04657 * 3 2 1 5 5 C 1.52998 * 109.46688 * 179.97438 * 4 3 2 6 6 S 1.81009 * 109.46626 * 180.02562 * 5 4 3 7 7 C 1.76204 * 99.99790 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99780 * 359.97438 * 7 6 5 9 9 C 1.38798 * 119.99794 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99990 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99649 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47006 * 59.99629 * 11 9 7 13 13 H 1.48502 * 109.46566 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47134 * 299.99131 * 11 9 7 15 15 C 1.46899 * 110.99763 * 236.04589 * 2 1 3 16 16 C 1.50700 * 109.47256 * 293.95312 * 15 2 1 17 17 C 1.33399 * 125.19268 * 90.03099 * 16 15 2 18 18 C 1.38470 * 114.90859 * 179.77238 * 17 16 15 19 19 Br 1.89098 * 122.54493 * 180.24710 * 18 17 16 20 20 C 1.33430 * 114.90709 * 0.42675 * 18 17 16 21 21 S 1.75877 * 125.19613 * 270.02474 * 16 15 2 22 22 H 1.08999 * 109.47238 * 183.95315 * 1 2 3 23 23 H 1.08994 * 109.47126 * 303.95563 * 1 2 3 24 24 H 1.09007 * 109.47281 * 63.95090 * 1 2 3 25 25 H 1.08998 * 109.46832 * 186.05081 * 3 2 1 26 26 H 1.09000 * 109.47291 * 306.04598 * 3 2 1 27 27 H 1.09000 * 109.46939 * 299.99773 * 4 3 2 28 28 H 1.09000 * 109.47129 * 59.99841 * 4 3 2 29 29 H 1.09000 * 109.47351 * 299.99651 * 5 4 3 30 30 H 1.09000 * 109.47359 * 60.00112 * 5 4 3 31 31 H 0.97005 * 120.00087 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.46774 * 173.95231 * 15 2 1 33 33 H 1.09000 * 109.47440 * 53.95894 * 15 2 1 34 34 H 1.07995 * 122.54360 * 359.97438 * 17 16 15 35 35 H 1.08002 * 125.20586 * 179.86604 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 16 1.7503 4.2969 2.8784 7 6 2.4830 5.8773 2.6133 8 1 3.0020 6.0837 1.6890 9 6 2.3939 6.8566 3.5929 10 7 1.7617 6.6048 4.7196 11 14 3.1713 8.5319 3.3122 12 1 2.5627 9.1655 2.1149 13 1 2.9366 9.3916 4.5000 14 1 4.6318 8.3703 3.0984 15 6 1.9954 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 6 0.5241 -2.7948 -1.4327 18 6 0.4132 -4.1488 -1.1647 19 35 -1.0719 -5.1779 -1.7228 20 6 1.4319 -4.6714 -0.4796 21 16 2.6217 -3.4198 -0.1452 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3634 0.4513 -0.9233 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 0.5472 2.0845 1.4265 28 1 2.0658 1.5015 2.1492 29 1 3.2646 3.4582 1.2105 30 1 1.7463 4.0418 0.4875 31 1 1.6992 7.2893 5.4041 32 1 3.0797 -0.6611 -1.1756 33 1 1.5611 -0.3872 -2.0628 34 1 -0.2312 -2.2462 -1.9756 35 1 1.5155 -5.7057 -0.1802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = 10.255351 kcal Electronic energy + Delta-G solvation = -17058.889063 eV Core-core repulsion = 14162.028682 eV Total energy + Delta-G solvation = -2896.860381 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 348.987 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.70855 -38.22658 -34.65210 -34.46531 -32.29903 -30.63866 -28.41772 -27.94854 -27.26184 -24.69541 -22.89446 -21.76231 -20.20187 -19.54693 -18.24491 -16.99438 -16.88631 -16.71114 -16.51294 -15.92895 -15.51249 -15.21997 -14.55861 -14.36366 -14.13777 -13.76001 -13.61127 -13.33927 -13.31698 -13.05715 -12.88631 -12.67869 -12.54656 -12.33705 -12.27172 -11.84279 -11.68775 -11.58989 -11.35404 -11.21908 -11.12208 -10.30316 -9.80951 -9.36484 -9.30677 -8.65633 -8.36185 -6.12531 -0.17070 0.17135 0.72749 1.31654 1.33005 1.39610 1.41440 1.48420 1.76372 2.29622 2.97842 2.99284 3.34526 3.69142 3.97597 4.06197 4.12479 4.20336 4.36041 4.37534 4.46744 4.53968 4.64210 4.66142 4.76176 4.83684 4.87362 5.02417 5.06687 5.17226 5.21366 5.34387 5.40295 6.02026 6.03070 6.18813 7.05750 8.72909 Molecular weight = 348.99amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.001715 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.470780 B =16321.108705 C =16631.950281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.546 5.546 3 C 0.072 3.928 4 C -0.082 4.082 5 C -0.086 4.086 6 S -0.201 6.201 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.013 3.987 10 N -0.908 5.908 11 Si 0.994 3.006 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.264 1.264 15 C 0.123 3.877 16 C -0.166 4.166 17 C -0.125 4.125 18 C -0.113 4.113 19 Br -0.033 7.033 20 C -0.190 4.190 21 S 0.174 5.826 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.271 0.729 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.150 0.850 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -26.586 -16.834 31.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.058 4.058 4 C -0.121 4.121 5 C -0.236 4.236 6 S 0.027 5.973 7 C -0.685 4.685 8 H 0.092 0.908 9 C -0.191 4.191 10 N -0.544 5.544 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.201 1.201 14 H -0.189 1.189 15 C -0.006 4.006 16 C -0.285 4.285 17 C -0.156 4.156 18 C -0.206 4.206 19 Br 0.050 6.950 20 C -0.329 4.329 21 S 0.438 5.562 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.645 -27.476 -14.783 31.244 hybrid contribution -0.468 1.998 -2.068 2.914 sum -2.113 -25.478 -16.851 30.620 Atomic orbital electron populations 1.22488 0.86888 1.02473 1.01001 1.61915 1.08772 1.13631 1.42757 1.22018 1.00676 0.87114 0.95954 1.21162 1.00812 0.91787 0.98367 1.23149 1.02587 0.98811 0.99020 1.84687 1.75094 1.14011 1.23496 1.23009 1.40929 0.98569 1.06025 0.90831 1.26089 0.95563 1.03430 0.94058 1.70153 1.41237 1.35951 1.07076 0.85065 0.78852 0.76355 0.78139 1.18904 1.20066 1.18865 1.20590 1.01299 0.86141 0.92570 1.24412 0.99176 0.99893 1.04980 1.19987 0.98925 0.92784 1.03923 1.20746 0.96840 0.95380 1.07587 1.96712 1.38808 1.69647 1.89786 1.26012 0.97592 1.05136 1.04156 1.84502 1.21017 0.97371 1.53347 0.90920 0.91722 0.94671 0.89696 0.93858 0.91952 0.91760 0.91722 0.91951 0.92001 0.88536 0.91496 0.83246 0.79313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.06 127.69 1.16 1.56 16 2 N -0.55 -11.68 4.75 -927.04 -4.41 -16.09 16 3 C 0.07 1.68 4.96 86.30 0.43 2.11 16 4 C -0.08 -2.59 5.15 30.59 0.16 -2.43 16 5 C -0.09 -3.39 5.67 71.98 0.41 -2.98 16 6 S -0.20 -10.76 21.44 -56.49 -1.21 -11.98 16 7 C -0.54 -31.06 9.50 67.95 0.65 -30.42 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 9 C 0.01 0.77 5.49 84.86 0.47 1.23 16 10 N -0.91 -55.10 13.22 21.65 0.29 -54.81 16 11 Si 0.99 43.86 29.55 68.60 2.03 45.88 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 13 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 14 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 15 C 0.12 2.06 5.46 85.56 0.47 2.53 16 16 C -0.17 -2.80 5.43 24.59 0.13 -2.66 16 17 C -0.12 -2.08 8.45 21.23 0.18 -1.90 16 18 C -0.11 -1.86 6.17 21.24 0.13 -1.73 16 19 Br -0.03 -0.51 33.87 -20.37 -0.69 -1.20 16 20 C -0.19 -2.79 11.05 66.73 0.74 -2.05 16 21 S 0.17 2.69 23.33 -56.49 -1.32 1.38 16 22 H 0.07 1.43 6.30 -2.39 -0.02 1.42 16 23 H 0.06 1.51 6.30 -2.39 -0.02 1.50 16 24 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.08 1.85 7.93 -2.39 -0.02 1.83 16 26 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 27 H 0.06 2.01 6.47 -2.39 -0.02 2.00 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.27 15.30 8.31 -92.70 -0.77 14.52 16 32 H 0.10 1.46 7.93 -2.39 -0.02 1.44 16 33 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -65.65 339.85 0.68 -64.97 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.08 Total: 8.59 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 4.91 Total: -36.74 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -4.12 Total: -70.91 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -2.53 Total: -10.60 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.20 kcal Total: -65.65 0.68 -64.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.229 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds