Wall clock time and date at job start Tue Mar 31 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00312 * 2 1 4 4 C 1.53005 * 109.47214 * 293.95573 * 3 2 1 5 5 C 1.53002 * 109.47134 * 179.97438 * 4 3 2 6 6 S 1.80994 * 109.47179 * 179.97438 * 5 4 3 7 7 C 1.76201 * 100.00195 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99672 * 0.02562 * 7 6 5 9 9 C 1.38794 * 119.99744 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00478 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99559 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47660 * 270.00045 * 11 9 7 13 13 H 1.48504 * 109.47324 * 30.00021 * 11 9 7 14 14 H 1.48506 * 109.47003 * 149.99851 * 11 9 7 15 15 C 1.46896 * 110.99920 * 123.95689 * 2 1 3 16 16 H 1.08993 * 109.40033 * 186.21501 * 15 2 1 17 17 C 1.53075 * 109.40281 * 66.46925 * 15 2 1 18 18 C 1.53337 * 108.41535 * 190.95496 * 17 15 2 19 19 C 1.52923 * 108.68588 * 67.53253 * 18 17 15 20 20 N 1.45757 * 110.48775 * 309.26427 * 19 18 17 21 21 C 1.39927 * 117.94287 * 199.07225 * 20 19 18 22 22 C 1.38870 * 120.06951 * 270.67693 * 21 20 19 23 23 C 1.38115 * 119.92450 * 179.79485 * 22 21 20 24 24 C 1.38277 * 120.07160 * 0.48682 * 23 22 21 25 25 C 1.38283 * 120.14412 * 359.75026 * 24 23 22 26 26 C 1.38116 * 120.06720 * 0.02562 * 25 24 23 27 27 C 1.33354 * 124.10572 * 19.05094 * 20 19 18 28 28 O 1.21288 * 118.24404 * 177.79967 * 27 20 19 29 29 H 1.09004 * 109.47284 * 59.99568 * 1 2 3 30 30 H 1.08997 * 109.47609 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46742 * 300.00350 * 1 2 3 32 32 H 1.08997 * 109.47247 * 173.95277 * 3 2 1 33 33 H 1.09001 * 109.47069 * 53.95134 * 3 2 1 34 34 H 1.08997 * 109.47256 * 59.99709 * 4 3 2 35 35 H 1.09001 * 109.46744 * 299.99760 * 4 3 2 36 36 H 1.09004 * 109.46890 * 60.00028 * 5 4 3 37 37 H 1.08997 * 109.46905 * 300.00279 * 5 4 3 38 38 H 0.96998 * 120.00122 * 359.97438 * 10 9 7 39 39 H 1.08994 * 109.67087 * 310.70688 * 17 15 2 40 40 H 1.09002 * 109.66691 * 71.23742 * 17 15 2 41 41 H 1.09008 * 109.58937 * 307.78311 * 18 17 15 42 42 H 1.08993 * 109.74837 * 187.38077 * 18 17 15 43 43 H 1.08999 * 109.30324 * 188.94722 * 19 18 17 44 44 H 1.09001 * 109.29905 * 69.57422 * 19 18 17 45 45 H 1.07996 * 120.03415 * 0.02598 * 22 21 20 46 46 H 1.08004 * 119.96322 * 180.23124 * 23 22 21 47 47 H 1.08001 * 119.93111 * 179.71845 * 24 23 22 48 48 H 1.08000 * 119.96343 * 180.02562 * 25 24 23 49 49 H 1.08000 * 120.03339 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3183 5 6 2.1794 3.4860 -1.3180 6 16 1.7495 4.2974 -2.8777 7 6 2.4822 5.8778 -2.6127 8 1 3.0013 6.0841 -1.6884 9 6 2.3922 6.8573 -3.5919 10 7 1.7591 6.6060 -4.7182 11 14 3.1684 8.5330 -3.3106 12 1 2.1793 9.4352 -2.6679 13 1 4.3531 8.3878 -2.4270 14 1 3.5899 9.1082 -4.6132 15 6 1.9954 -0.7660 1.1375 16 1 3.0793 -0.6579 1.1763 17 6 1.6395 -2.2446 0.9632 18 6 1.9499 -2.9754 2.2750 19 6 0.9796 -2.4851 3.3505 20 7 0.9660 -1.0284 3.3994 21 6 0.4710 -0.4158 4.5560 22 6 -0.8813 -0.1183 4.6615 23 6 -1.3674 0.4826 5.8062 24 6 -0.5074 0.7969 6.8424 25 6 0.8406 0.5065 6.7384 26 6 1.3322 -0.0985 5.5983 27 6 1.3960 -0.2429 2.4113 28 8 1.2983 0.9581 2.5488 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.0798 1.3443 0.1083 33 1 1.5612 1.9273 0.8309 34 1 0.5473 2.0845 -1.4265 35 1 2.0659 1.5015 -2.1492 36 1 3.2637 3.4593 -1.2096 37 1 1.7447 4.0416 -0.4871 38 1 1.3557 5.7360 -4.8641 39 1 0.5791 -2.3418 0.7306 40 1 2.2336 -2.6722 0.1556 41 1 2.9738 -2.7593 2.5804 42 1 1.8289 -4.0496 2.1357 43 1 1.2891 -2.8753 4.3200 44 1 -0.0231 -2.8473 3.1233 45 1 -1.5528 -0.3598 3.8509 46 1 -2.4197 0.7108 5.8904 47 1 -0.8892 1.2709 7.7346 48 1 1.5096 0.7529 7.5496 49 1 2.3850 -0.3255 5.5178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:28 Heat of formation + Delta-G solvation = -5.010430 kcal Electronic energy + Delta-G solvation = -28255.149553 eV Core-core repulsion = 24501.119714 eV Total energy + Delta-G solvation = -3754.029840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58926 -39.29473 -37.24789 -36.86202 -34.12163 -32.51664 -32.27558 -31.28699 -29.72787 -29.21438 -27.21080 -25.42433 -24.67016 -23.91627 -22.97991 -22.61328 -21.75957 -20.57510 -19.10837 -18.06373 -17.91259 -17.01942 -16.57140 -16.53879 -15.82907 -15.40313 -15.10085 -14.91250 -14.52582 -14.27843 -14.18712 -13.89013 -13.81388 -13.77645 -13.68139 -13.25368 -12.90191 -12.71492 -12.40792 -12.35556 -12.02664 -11.94506 -11.85376 -11.76354 -11.57182 -11.54079 -11.17389 -11.04922 -10.86269 -10.76098 -10.30502 -10.19537 -10.14140 -9.29730 -9.27362 -9.25143 -9.14408 -8.93818 -8.27709 -8.22833 -6.61552 -6.56238 -3.92768 0.91019 1.04949 2.30332 2.54796 3.32350 3.37964 3.42914 3.45612 3.60637 3.79493 4.24462 4.27345 4.31734 4.34663 4.47672 4.58938 4.61553 4.75415 4.87384 4.92456 4.97255 5.06889 5.12338 5.19616 5.26428 5.28566 5.31169 5.33081 5.35677 5.41509 5.54605 5.61680 5.64594 5.68462 5.72720 5.83423 5.93486 5.96003 6.03345 6.14951 6.15508 6.16244 6.24692 6.37466 6.59463 6.67608 6.73992 6.87662 6.98258 7.06543 7.90645 8.03140 8.57139 9.34416 10.88366 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.002244 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.862646 B =12473.140366 C =13869.843534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.509 5.509 3 C 0.046 3.954 4 C -0.093 4.093 5 C -0.087 4.087 6 S -0.191 6.191 7 C -0.586 4.586 8 H 0.065 0.935 9 C 0.032 3.968 10 N -0.889 5.889 11 Si 1.087 2.913 12 H -0.284 1.284 13 H -0.287 1.287 14 H -0.280 1.280 15 C 0.075 3.925 16 H 0.113 0.887 17 C -0.116 4.116 18 C -0.134 4.134 19 C 0.115 3.885 20 N -0.567 5.567 21 C 0.135 3.865 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.109 4.109 27 C 0.491 3.509 28 O -0.525 6.525 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.277 0.723 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -24.541 22.912 33.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.232 5.232 3 C -0.082 4.082 4 C -0.132 4.132 5 C -0.236 4.236 6 S 0.037 5.963 7 C -0.734 4.734 8 H 0.083 0.917 9 C -0.178 4.178 10 N -0.524 5.524 11 Si 0.913 3.087 12 H -0.211 1.211 13 H -0.213 1.213 14 H -0.205 1.205 15 C -0.037 4.037 16 H 0.131 0.869 17 C -0.154 4.154 18 C -0.173 4.173 19 C -0.007 4.007 20 N -0.300 5.300 21 C 0.045 3.955 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.131 4.131 26 C -0.129 4.129 27 C 0.278 3.722 28 O -0.400 6.400 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.363 -23.044 20.854 31.261 hybrid contribution 0.223 -0.552 2.663 2.729 sum -3.141 -23.596 23.518 33.462 Atomic orbital electron populations 1.22604 0.87479 1.01652 1.02156 1.62487 1.08373 1.15646 1.36658 1.22494 0.99890 0.87035 0.98819 1.21303 1.01118 0.93968 0.96818 1.23018 1.02336 0.97199 1.01078 1.84090 1.75485 1.15322 1.21446 1.23568 1.43597 0.97802 1.08409 0.91668 1.26072 0.95829 1.03753 0.92139 1.70761 1.31639 1.25621 1.24331 0.83292 0.75862 0.73564 0.75988 1.21101 1.21299 1.20541 1.21900 1.01065 0.95003 0.85781 0.86883 1.21770 1.03297 0.92543 0.97822 1.21896 0.99725 1.01184 0.94455 1.21500 1.00369 0.78470 1.00388 1.45226 1.63137 1.06755 1.14848 1.17594 0.92113 0.98439 0.87334 1.21292 0.94622 0.98737 0.98080 1.21068 1.00072 0.98628 0.93310 1.21224 0.93624 0.99589 0.99025 1.21055 0.95706 0.98748 0.97622 1.21275 0.99444 0.98832 0.93326 1.21787 0.78051 0.87123 0.85217 1.90742 1.54917 1.15064 1.79254 0.90117 0.91534 0.94923 0.91250 0.91144 0.91819 0.91078 0.91953 0.92021 0.91074 0.90574 0.89391 0.90692 0.89083 0.90516 0.91487 0.86099 0.85595 0.85736 0.85616 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.64 60.07 0.52 0.63 16 2 N -0.51 -6.59 4.71 -236.55 -1.11 -7.71 16 3 C 0.05 0.73 4.40 -3.82 -0.02 0.71 16 4 C -0.09 -1.68 5.14 -26.73 -0.14 -1.82 16 5 C -0.09 -1.92 5.67 37.16 0.21 -1.71 16 6 S -0.19 -5.23 20.46 -107.50 -2.20 -7.43 16 7 C -0.59 -17.77 9.50 30.94 0.29 -17.47 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 C 0.03 0.96 5.49 -17.44 -0.10 0.86 16 10 N -0.89 -28.24 13.67 55.49 0.76 -27.48 16 11 Si 1.09 26.08 29.92 -169.99 -5.09 21.00 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.07 0.79 2.47 -69.08 -0.17 0.62 16 16 H 0.11 1.15 7.92 -51.93 -0.41 0.74 16 17 C -0.12 -0.81 5.45 -26.52 -0.14 -0.95 16 18 C -0.13 -0.64 6.02 -26.60 -0.16 -0.80 16 19 C 0.11 0.68 6.35 -4.48 -0.03 0.65 16 20 N -0.57 -5.51 2.85 -114.64 -0.33 -5.84 16 21 C 0.13 1.43 4.01 -83.69 -0.34 1.09 16 22 C -0.11 -1.09 9.97 -39.39 -0.39 -1.49 16 23 C -0.11 -0.98 10.04 -39.61 -0.40 -1.38 16 24 C -0.12 -0.95 10.04 -39.55 -0.40 -1.35 16 25 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 26 C -0.11 -1.08 9.97 -39.39 -0.39 -1.47 16 27 C 0.49 6.02 5.78 -11.87 -0.07 5.95 16 28 O -0.53 -8.73 12.83 5.55 0.07 -8.66 16 29 H 0.08 1.06 6.47 -51.93 -0.34 0.72 16 30 H 0.07 0.66 6.14 -51.93 -0.32 0.34 16 31 H 0.03 0.46 6.58 -51.93 -0.34 0.12 16 32 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 33 H 0.07 1.27 5.73 -51.93 -0.30 0.97 16 34 H 0.06 1.16 6.55 -51.93 -0.34 0.82 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.37 8.14 -51.91 -0.42 0.95 16 37 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.28 8.90 7.12 -40.82 -0.29 8.61 16 39 H 0.08 0.54 6.08 -51.93 -0.32 0.22 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.36 8.12 -51.92 -0.42 -0.06 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 48 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -36.31 398.41 -11.76 -48.07 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.76 Total: 1.33 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.11 Total: -19.28 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.68 Total: -41.02 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.09 Total: 21.00 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.20 Total: -7.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.31 -11.76 -48.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.060 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds