Wall clock time and date at job start Tue Mar 31 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00178 * 2 1 4 4 C 1.53001 * 109.46706 * 66.05222 * 3 2 1 5 5 C 1.53001 * 109.47004 * 179.97438 * 4 3 2 6 6 S 1.80999 * 109.47128 * 180.02562 * 5 4 3 7 7 C 1.76201 * 100.00200 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99843 * 0.02562 * 7 6 5 9 9 C 1.38792 * 120.00477 * 179.97438 * 7 6 5 10 10 N 1.31628 * 120.00602 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99720 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46982 * 89.99909 * 11 9 7 13 13 H 1.48495 * 109.47191 * 209.99784 * 11 9 7 14 14 H 1.48495 * 109.46983 * 329.99917 * 11 9 7 15 15 C 1.46903 * 110.99472 * 236.05146 * 2 1 3 16 16 H 1.09006 * 109.39859 * 178.78637 * 15 2 1 17 17 C 1.53065 * 109.40262 * 298.52321 * 15 2 1 18 18 C 1.53343 * 108.42989 * 169.03077 * 17 15 2 19 19 C 1.53101 * 108.52773 * 292.31308 * 18 17 15 20 20 N 1.45758 * 110.38585 * 51.11295 * 19 18 17 21 21 C 1.39928 * 117.94837 * 160.74686 * 20 19 18 22 22 C 1.38866 * 120.07250 * 89.12560 * 21 20 19 23 23 C 1.38113 * 119.92865 * 180.21210 * 22 21 20 24 24 C 1.38287 * 120.07003 * 359.51498 * 23 22 21 25 25 C 1.38278 * 120.13728 * 0.23783 * 24 23 22 26 26 C 1.38111 * 120.07690 * 359.97438 * 25 24 23 27 27 C 1.33352 * 124.10601 * 340.46355 * 20 19 18 28 28 O 1.21282 * 118.24646 * 182.48505 * 27 20 19 29 29 H 1.08994 * 109.47279 * 183.95163 * 1 2 3 30 30 H 1.08998 * 109.46604 * 303.95105 * 1 2 3 31 31 H 1.09002 * 109.47335 * 63.94277 * 1 2 3 32 32 H 1.09004 * 109.46916 * 186.04350 * 3 2 1 33 33 H 1.09000 * 109.47417 * 306.05019 * 3 2 1 34 34 H 1.09001 * 109.47267 * 299.99755 * 4 3 2 35 35 H 1.09000 * 109.47349 * 59.99755 * 4 3 2 36 36 H 1.09002 * 109.47226 * 299.99535 * 5 4 3 37 37 H 1.09000 * 109.47244 * 59.99720 * 5 4 3 38 38 H 0.97001 * 120.00480 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.67540 * 288.76858 * 17 15 2 40 40 H 1.09002 * 109.67518 * 49.25907 * 17 15 2 41 41 H 1.09007 * 109.59911 * 52.22443 * 18 17 15 42 42 H 1.09001 * 109.60672 * 172.71578 * 18 17 15 43 43 H 1.08999 * 109.50190 * 290.73848 * 19 18 17 44 44 H 1.09001 * 109.20599 * 171.29583 * 19 18 17 45 45 H 1.07999 * 120.03547 * 0.02562 * 22 21 20 46 46 H 1.07995 * 119.96430 * 179.79290 * 23 22 21 47 47 H 1.07996 * 119.92546 * 180.24901 * 24 23 22 48 48 H 1.08009 * 119.95911 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.03820 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3184 5 6 2.1805 3.4854 1.3187 6 16 1.7506 4.2966 2.8786 7 6 2.4846 5.8766 2.6143 8 1 3.0034 6.0831 1.6899 9 6 2.3951 6.8560 3.5937 10 7 2.9438 8.0361 3.3965 11 14 1.4971 6.4989 5.1923 12 1 2.4536 5.9451 6.1843 13 1 0.9083 7.7556 5.7207 14 1 0.4158 5.5122 4.9429 15 6 1.9953 -0.7659 -1.1377 16 1 3.0847 -0.7309 -1.1248 17 6 1.5339 -2.2212 -1.0280 18 6 1.8548 -2.9324 -2.3482 19 6 0.9645 -2.3446 -3.4463 20 7 1.0565 -0.8900 -3.4503 21 6 0.6574 -0.2107 -4.6067 22 6 -0.6653 0.1831 -4.7609 23 6 -1.0569 0.8494 -5.9055 24 6 -0.1313 1.1334 -6.8929 25 6 1.1876 0.7471 -6.7400 26 6 1.5847 0.0766 -5.5998 27 6 1.4921 -0.1655 -2.4189 28 8 1.4816 1.0430 -2.5212 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3632 0.5739 0.8525 31 1 -0.3634 0.4514 -0.9232 32 1 3.0798 1.3443 -0.1082 33 1 1.5611 1.9274 -0.8308 34 1 0.5473 2.0843 1.4267 35 1 2.0659 1.5013 2.1492 36 1 3.2648 3.4580 1.2107 37 1 1.7465 4.0417 0.4878 38 1 2.8816 8.7205 4.0811 39 1 2.0599 -2.7123 -0.2093 40 1 0.4598 -2.2529 -0.8453 41 1 2.9038 -2.7779 -2.6010 42 1 1.6536 -3.9989 -2.2474 43 1 -0.0703 -2.6397 -3.2726 44 1 1.2878 -2.7286 -4.4139 45 1 -1.3876 -0.0342 -3.9880 46 1 -2.0861 1.1530 -6.0275 47 1 -0.4392 1.6582 -7.7852 48 1 1.9082 0.9708 -7.5129 49 1 2.6151 -0.2245 -5.4809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:31 Heat of formation + Delta-G solvation = 3.078423 kcal Electronic energy + Delta-G solvation = -28299.041558 eV Core-core repulsion = 24545.362478 eV Total energy + Delta-G solvation = -3753.679081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58374 -39.28685 -37.23976 -36.86320 -34.10472 -32.38565 -32.31501 -31.26668 -29.70786 -29.19546 -27.24590 -25.71479 -25.07654 -23.92615 -22.96411 -22.66922 -21.73856 -20.60018 -19.09981 -17.91023 -17.41660 -17.00621 -16.55657 -16.48034 -15.78030 -15.42584 -15.08424 -14.91073 -14.88969 -14.39389 -14.23948 -14.09084 -13.84667 -13.75409 -13.52360 -13.24166 -12.89565 -12.77773 -12.41582 -12.32413 -11.97323 -11.94341 -11.86421 -11.60229 -11.53939 -11.46551 -11.37340 -11.03364 -10.97437 -10.91259 -10.32848 -10.17028 -10.02483 -9.69307 -9.27780 -9.23911 -9.12333 -8.93768 -8.47560 -8.24175 -6.85577 -6.21491 -3.92754 0.93032 1.07045 2.31626 2.56207 3.07775 3.35102 3.39978 3.50830 3.58127 3.82627 4.25020 4.27832 4.33710 4.38009 4.48137 4.60687 4.63630 4.77512 4.87228 4.89762 4.93248 4.97978 5.08606 5.13304 5.17184 5.22130 5.28692 5.33137 5.34949 5.40932 5.52405 5.60480 5.66270 5.67792 5.72521 5.82477 5.91936 5.97748 6.05066 6.16901 6.17588 6.17897 6.27063 6.38731 6.60028 6.69293 6.74640 6.88304 6.99116 7.08535 7.92888 8.02547 8.52372 9.24556 10.88181 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002301 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.820483 B =12164.638683 C =13472.919593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.510 5.510 3 C 0.043 3.957 4 C -0.095 4.095 5 C -0.079 4.079 6 S -0.218 6.218 7 C -0.499 4.499 8 H 0.087 0.913 9 C 0.090 3.910 10 N -0.884 5.884 11 Si 0.862 3.138 12 H -0.269 1.269 13 H -0.277 1.277 14 H -0.238 1.238 15 C 0.075 3.925 16 H 0.114 0.886 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.115 3.885 20 N -0.568 5.568 21 C 0.134 3.866 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.113 4.113 26 C -0.109 4.109 27 C 0.489 3.511 28 O -0.523 6.523 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.270 0.730 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 -27.367 -19.896 34.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.232 5.232 3 C -0.085 4.085 4 C -0.134 4.134 5 C -0.228 4.228 6 S 0.010 5.990 7 C -0.647 4.647 8 H 0.105 0.895 9 C -0.118 4.118 10 N -0.521 5.521 11 Si 0.687 3.313 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.162 1.162 15 C -0.037 4.037 16 H 0.132 0.868 17 C -0.157 4.157 18 C -0.172 4.172 19 C -0.007 4.007 20 N -0.300 5.300 21 C 0.045 3.955 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.131 4.131 26 C -0.128 4.128 27 C 0.277 3.723 28 O -0.398 6.398 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.424 -27.152 -18.460 33.455 hybrid contribution 0.148 1.034 -1.100 1.517 sum -6.276 -26.118 -19.560 33.228 Atomic orbital electron populations 1.22598 0.87593 1.01911 1.01711 1.62497 1.08263 1.15799 1.36675 1.22561 1.00122 0.87017 0.98806 1.21341 1.01094 0.94001 0.96989 1.22988 1.02703 0.96980 1.00111 1.84083 1.75565 1.15894 1.23477 1.22143 1.39871 0.95210 1.07455 0.89452 1.24801 0.94553 0.94034 0.98364 1.69943 1.43339 1.03861 1.34952 0.86658 0.81813 0.79171 0.83629 1.19391 1.20202 1.16167 1.21896 1.01630 0.94497 0.85660 0.86788 1.21809 1.02876 0.93054 0.97921 1.21929 1.00360 1.00746 0.94186 1.21535 1.00501 0.78379 1.00319 1.45246 1.65136 1.06859 1.12755 1.17594 0.92684 0.97654 0.87580 1.21286 0.95288 0.98308 0.97868 1.21067 0.99932 0.98490 0.93591 1.21225 0.93401 0.99563 0.99254 1.21056 0.96306 0.98286 0.97470 1.21274 0.99096 0.98833 0.93639 1.21838 0.77358 0.87811 0.85320 1.90730 1.54010 1.14333 1.80693 0.91347 0.90081 0.95343 0.91160 0.90600 0.91789 0.91069 0.91499 0.91533 0.92057 0.89402 0.90516 0.90609 0.89135 0.91491 0.90534 0.86130 0.85608 0.85737 0.85611 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.74 60.06 0.53 0.64 16 2 N -0.51 -6.35 4.75 -236.55 -1.12 -7.47 16 3 C 0.04 0.66 4.24 -3.82 -0.02 0.65 16 4 C -0.10 -1.64 5.15 -26.73 -0.14 -1.78 16 5 C -0.08 -1.68 5.67 37.16 0.21 -1.46 16 6 S -0.22 -5.60 19.41 -107.50 -2.09 -7.69 16 7 C -0.50 -15.12 10.04 30.94 0.31 -14.81 16 8 H 0.09 2.82 8.03 -52.48 -0.42 2.40 16 9 C 0.09 2.73 5.50 -17.43 -0.10 2.64 16 10 N -0.88 -27.67 13.97 55.49 0.78 -26.90 16 11 Si 0.86 22.25 27.74 -169.99 -4.72 17.54 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 14 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 15 C 0.08 0.77 2.51 -69.08 -0.17 0.60 16 16 H 0.11 1.13 8.03 -51.93 -0.42 0.71 16 17 C -0.12 -0.79 5.37 -26.52 -0.14 -0.93 16 18 C -0.13 -0.61 6.03 -26.50 -0.16 -0.77 16 19 C 0.11 0.67 6.35 -4.39 -0.03 0.64 16 20 N -0.57 -5.45 2.84 -114.54 -0.33 -5.78 16 21 C 0.13 1.42 4.01 -83.69 -0.34 1.09 16 22 C -0.11 -1.10 9.97 -39.39 -0.39 -1.49 16 23 C -0.11 -0.99 10.04 -39.61 -0.40 -1.39 16 24 C -0.12 -0.96 10.04 -39.55 -0.40 -1.36 16 25 C -0.11 -0.97 10.04 -39.61 -0.40 -1.37 16 26 C -0.11 -1.08 9.97 -39.39 -0.39 -1.47 16 27 C 0.49 5.91 5.75 -11.87 -0.07 5.84 16 28 O -0.52 -8.61 12.87 5.56 0.07 -8.54 16 29 H 0.07 0.63 6.12 -51.93 -0.32 0.31 16 30 H 0.08 1.00 6.30 -51.93 -0.33 0.68 16 31 H 0.03 0.37 6.79 -51.93 -0.35 0.02 16 32 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 33 H 0.08 1.34 5.53 -51.93 -0.29 1.05 16 34 H 0.06 1.10 6.47 -51.93 -0.34 0.76 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.42 8.14 -51.91 -0.42 1.00 16 37 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 38 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.52 5.94 -51.93 -0.31 0.21 16 41 H 0.08 0.35 8.12 -51.92 -0.42 -0.07 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.36 8.08 -51.93 -0.42 -0.05 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 49 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -35.47 396.82 -11.34 -46.81 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.83 Total: 0.77 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.09 Total: -14.73 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.67 Total: -40.15 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.72 Total: 17.54 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -2.09 Total: -7.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.47 -11.34 -46.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.891 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds