Wall clock time and date at job start Tue Mar 31 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99838 * 2 1 4 4 C 1.52998 * 109.47123 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47241 * 64.99681 * 4 3 2 6 6 C 1.35434 * 117.00178 * 179.97438 * 5 4 3 7 7 N 1.32215 * 119.80433 * 0.02562 * 6 5 4 8 8 C 1.31895 * 121.81084 * 180.02562 * 7 6 5 9 9 C 1.38368 * 121.19552 * 359.97438 * 8 7 6 10 10 C 1.38329 * 119.46288 * 0.29910 * 9 8 7 11 11 C 1.40046 * 118.34430 * 359.45754 * 10 9 8 12 12 C 1.47412 * 120.60368 * 180.26359 * 11 10 9 13 13 O 1.21624 * 120.00018 * 150.65134 * 12 11 10 14 14 N 1.34783 * 120.00304 * 330.65816 * 12 11 10 15 15 C 1.36896 * 119.99971 * 187.17540 * 14 12 11 16 16 H 1.07997 * 120.00159 * 337.24725 * 15 14 12 17 17 C 1.39021 * 119.99972 * 157.25454 * 15 14 12 18 18 N 1.31385 * 120.00333 * 36.33474 * 17 15 14 19 19 Si 1.86799 * 120.00103 * 216.34027 * 17 15 14 20 20 H 1.48501 * 109.47374 * 59.99466 * 19 17 15 21 21 H 1.48501 * 109.47416 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47163 * 299.99754 * 19 17 15 23 23 C 1.46497 * 119.99566 * 7.17196 * 14 12 11 24 24 C 1.52999 * 109.47339 * 100.02536 * 23 14 12 25 25 F 1.39900 * 109.46884 * 59.99541 * 24 23 14 26 26 F 1.39901 * 109.47220 * 179.97438 * 24 23 14 27 27 F 1.39905 * 109.46763 * 299.99842 * 24 23 14 28 28 H 1.09000 * 109.46949 * 300.00110 * 1 2 3 29 29 H 1.08998 * 109.47233 * 60.00106 * 1 2 3 30 30 H 1.09005 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47468 * 59.99529 * 3 2 1 32 32 H 1.09008 * 109.47189 * 299.99689 * 3 2 1 33 33 H 1.08996 * 109.47409 * 304.99562 * 4 3 2 34 34 H 1.09004 * 109.47595 * 184.99810 * 4 3 2 35 35 H 1.07991 * 119.40463 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.26992 * 180.02562 * 9 8 7 37 37 H 1.08004 * 120.82633 * 179.73065 * 10 9 8 38 38 H 0.96995 * 120.00115 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.46831 * 220.02324 * 23 14 12 40 40 H 1.09004 * 109.47642 * 340.02333 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2200 6 6 5.2985 0.3989 -1.3805 7 7 6.1325 0.7787 -0.4275 8 6 7.4371 0.6225 -0.5424 9 6 7.9936 0.0501 -1.6726 10 6 7.1683 -0.3607 -2.7039 11 6 5.7860 -0.1898 -2.5577 12 6 4.8604 -0.6151 -3.6232 13 8 3.7318 -0.9709 -3.3420 14 7 5.2646 -0.6097 -4.9089 15 6 4.3657 -0.8621 -5.9101 16 1 3.4601 -1.4106 -5.6971 17 6 4.6187 -0.4124 -7.2010 18 7 5.8469 -0.4118 -7.6677 19 14 3.2124 0.1912 -8.2722 20 1 2.5487 1.3451 -7.6139 21 1 3.7425 0.6135 -9.5935 22 1 2.2280 -0.9045 -8.4605 23 6 6.6660 -0.3338 -5.2349 24 6 7.3954 -1.6511 -5.5063 25 9 6.7871 -2.3081 -6.5813 26 9 8.7335 -1.3875 -5.8182 27 9 7.3324 -2.4621 -4.3680 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1766 0.0902 35 1 8.0827 0.9465 0.2604 36 1 9.0639 -0.0710 -1.7507 37 1 7.5794 -0.8062 -3.5978 38 1 6.0234 -0.0977 -8.5682 39 1 6.7150 0.2980 -6.1218 40 1 7.1399 0.1781 -4.3974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075105611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:37 Heat of formation + Delta-G solvation = -164.795316 kcal Electronic energy + Delta-G solvation = -32644.366522 eV Core-core repulsion = 27627.132089 eV Total energy + Delta-G solvation = -5017.234433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.21388 -46.80949 -46.28400 -40.55330 -38.58119 -37.96278 -37.08841 -35.10979 -32.93472 -31.50172 -31.13882 -29.47647 -28.61202 -26.27088 -25.52879 -24.06335 -23.16679 -22.55497 -21.86301 -19.96515 -18.38198 -17.98967 -17.44548 -17.31382 -16.76732 -16.68434 -16.37949 -15.84831 -15.64593 -15.20859 -15.15766 -14.79799 -14.61283 -14.17987 -14.03220 -13.63182 -13.35223 -13.30871 -13.15695 -13.12568 -13.04438 -12.81772 -12.50396 -12.42621 -12.27076 -12.07294 -11.68937 -11.60776 -11.45587 -11.24925 -10.94504 -10.78396 -10.66576 -10.53042 -10.30481 -9.66634 -9.53488 -9.44599 -8.87417 -8.56460 -8.16216 -8.13094 -6.66307 -3.92042 1.13178 1.51497 3.12941 3.21887 3.24304 3.28548 3.49874 3.81171 3.83989 3.93839 4.25917 4.39047 4.55227 4.67413 4.96405 4.98156 5.03846 5.09115 5.16038 5.21580 5.24938 5.32366 5.35471 5.43871 5.48151 5.50206 5.59088 5.74642 5.79422 5.82857 5.97418 6.15025 6.35310 6.60869 6.66940 7.20280 7.41228 7.58297 7.88491 8.07325 8.27559 8.96784 9.12408 9.74467 10.36116 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.004900 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.754707 B = 5713.035132 C = 7812.144998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.063 3.937 4 C 0.069 3.931 5 O -0.262 6.262 6 C 0.359 3.641 7 N -0.548 5.548 8 C 0.139 3.861 9 C -0.217 4.217 10 C -0.058 4.058 11 C -0.170 4.170 12 C 0.501 3.499 13 O -0.542 6.542 14 N -0.432 5.432 15 C -0.325 4.325 16 H 0.113 0.887 17 C 0.053 3.947 18 N -0.844 5.844 19 Si 0.913 3.087 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.028 3.972 24 C 0.438 3.562 25 F -0.141 7.141 26 F -0.201 7.201 27 F -0.201 7.201 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.162 0.838 38 H 0.276 0.724 39 H 0.157 0.843 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 5.376 10.292 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C -0.014 4.014 4 C -0.007 4.007 5 O -0.167 6.167 6 C 0.178 3.822 7 N -0.273 5.273 8 C -0.017 4.017 9 C -0.238 4.238 10 C -0.083 4.083 11 C -0.177 4.177 12 C 0.290 3.710 13 O -0.423 6.423 14 N -0.151 5.151 15 C -0.451 4.451 16 H 0.130 0.870 17 C -0.154 4.154 18 N -0.480 5.480 19 Si 0.739 3.261 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.099 4.099 24 C 0.382 3.618 25 F -0.122 7.122 26 F -0.183 7.183 27 F -0.183 7.183 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.175 0.825 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.087 0.913 39 H 0.174 0.826 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.660 5.334 10.791 12.151 hybrid contribution 0.060 -0.045 -1.224 1.226 sum 1.719 5.289 9.567 11.066 Atomic orbital electron populations 1.22722 0.81239 1.02848 0.99558 1.88033 1.19474 1.26840 1.95286 1.22582 0.91927 0.85929 1.00940 1.22646 0.92809 0.98509 0.86695 1.86560 1.16813 1.74864 1.38426 1.19717 0.84241 0.89536 0.88672 1.67354 1.05563 1.24101 1.30283 1.22414 0.89572 0.93316 0.96437 1.21892 1.01294 1.05140 0.95438 1.22761 0.91890 0.94426 0.99240 1.20290 0.94439 1.06617 0.96335 1.17353 0.87386 0.84746 0.81493 1.90705 1.20245 1.50151 1.81186 1.43382 1.05347 1.61191 1.05220 1.19513 1.01826 1.36239 0.87515 0.86976 1.25307 0.97340 0.95492 0.97226 1.70037 1.20618 1.39786 1.17556 0.86211 0.81876 0.80179 0.77876 1.19705 1.20965 1.19548 1.24206 0.84921 0.93204 1.07533 1.21385 0.76564 0.89237 0.74582 1.93273 1.82160 1.82061 1.54719 1.93084 1.37656 1.94195 1.93325 1.93043 1.96247 1.76815 1.52171 0.94554 0.93894 0.89626 0.91525 0.92112 0.90949 0.90368 0.82542 0.84427 0.82097 0.91341 0.82603 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.17 10.67 -40.09 -0.43 -6.60 16 3 C 0.06 0.85 6.32 37.16 0.23 1.09 16 4 C 0.07 1.05 5.69 37.16 0.21 1.26 16 5 O -0.26 -5.38 8.60 -41.95 -0.36 -5.74 16 6 C 0.36 7.15 7.48 -16.59 -0.12 7.02 16 7 N -0.55 -9.13 9.21 -12.96 -0.12 -9.25 16 8 C 0.14 1.89 11.17 -17.48 -0.20 1.69 16 9 C -0.22 -3.03 10.09 -39.50 -0.40 -3.43 16 10 C -0.06 -1.03 7.01 -38.87 -0.27 -1.30 16 11 C -0.17 -3.61 5.63 -104.69 -0.59 -4.20 16 12 C 0.50 12.66 7.32 -12.52 -0.09 12.57 16 13 O -0.54 -15.48 15.45 -13.84 -0.21 -15.69 16 14 N -0.43 -10.78 2.57 -116.04 -0.30 -11.08 16 15 C -0.33 -8.69 8.42 -15.00 -0.13 -8.82 16 16 H 0.11 3.21 7.54 -52.49 -0.40 2.81 16 17 C 0.05 1.31 5.09 -17.45 -0.09 1.22 16 18 N -0.84 -20.34 8.01 55.50 0.44 -19.89 16 19 Si 0.91 19.77 29.67 -169.99 -5.04 14.73 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 C 0.03 0.59 4.51 -4.04 -0.02 0.57 16 24 C 0.44 9.34 2.61 37.16 0.10 9.44 16 25 F -0.14 -3.44 13.93 2.25 0.03 -3.40 16 26 F -0.20 -3.83 17.32 2.25 0.04 -3.80 16 27 F -0.20 -4.23 14.94 2.25 0.03 -4.20 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.16 2.89 2.29 -52.48 -0.12 2.77 16 38 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 39 H 0.16 3.49 5.43 -51.93 -0.28 3.20 16 40 H 0.11 1.97 3.77 -54.52 -0.21 1.76 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -31.89 344.39 -4.91 -36.81 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.94 Total: 4.29 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: -0.25 Total: 18.63 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.03 Total: -40.22 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.00 Total: -28.03 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 0.10 Total: -11.40 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.04 Total: 14.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.89 -4.91 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075105611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.986 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds