Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86796 * 119.99859 * 2 1 4 4 H 1.48500 * 109.47383 * 239.99864 * 3 2 1 5 5 H 1.48500 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47067 * 120.00260 * 3 2 1 7 7 C 1.39933 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00001 * 182.33807 * 7 2 1 9 9 C 1.41437 * 120.00152 * 2.33792 * 7 2 1 10 10 C 1.40789 * 120.17745 * 150.87234 * 9 7 2 11 11 C 1.37716 * 120.03928 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41929 * 359.72915 * 11 10 9 13 13 C 1.39896 * 120.34990 * 0.55214 * 12 11 10 14 14 C 1.47854 * 120.02435 * 179.71674 * 13 12 11 15 15 O 1.21554 * 120.00104 * 150.16226 * 14 13 12 16 16 N 1.34774 * 119.99879 * 330.17056 * 14 13 12 17 17 C 1.46499 * 120.00560 * 8.42289 * 16 14 13 18 18 C 1.53003 * 109.47078 * 98.90697 * 17 16 14 19 19 F 1.39899 * 109.46829 * 60.00923 * 18 17 16 20 20 F 1.39906 * 109.47001 * 180.02562 * 18 17 16 21 21 F 1.39900 * 109.47409 * 300.00608 * 18 17 16 22 22 C 1.39854 * 120.00095 * 188.42052 * 16 14 13 23 23 C 1.38884 * 120.07675 * 187.49795 * 22 16 14 24 24 C 1.38109 * 119.92997 * 179.70484 * 23 22 16 25 25 C 1.38284 * 120.06789 * 0.57286 * 24 23 22 26 26 C 1.38281 * 120.14707 * 359.72591 * 25 24 23 27 27 C 1.38107 * 120.07384 * 359.97438 * 26 25 24 28 28 C 1.39045 * 119.94777 * 359.44923 * 13 12 11 29 29 H 0.96997 * 120.00143 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.98004 * 0.05201 * 10 9 7 31 31 H 1.08006 * 119.78823 * 180.02562 * 11 10 9 32 32 H 1.07995 * 119.82164 * 180.29684 * 12 11 10 33 33 H 1.09001 * 109.46934 * 338.91325 * 17 16 14 34 34 H 1.08991 * 109.47764 * 218.91336 * 17 16 14 35 35 H 1.08004 * 120.03735 * 0.02562 * 23 22 16 36 36 H 1.08000 * 119.96593 * 180.32560 * 24 23 22 37 37 H 1.08006 * 119.92571 * 179.70098 * 25 24 23 38 38 H 1.08004 * 119.96841 * 179.97438 * 26 25 24 39 39 H 1.08004 * 120.04056 * 180.02562 * 27 26 25 40 40 H 1.08003 * 120.20138 * 180.25425 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0873 -1.2123 0.0376 9 6 1.3017 -2.4362 -0.0511 10 6 1.8895 -3.5683 -0.6468 11 6 1.1991 -4.7589 -0.6949 12 6 -0.0715 -4.8542 -0.1552 13 6 -0.6741 -3.7385 0.4355 14 6 -2.0345 -3.8468 1.0044 15 8 -2.3581 -3.1464 1.9436 16 7 -2.9157 -4.7224 0.4817 17 6 -2.4753 -5.6935 -0.5231 18 6 -2.2193 -7.0433 0.1502 19 9 -3.3989 -7.4962 0.7506 20 9 -1.7982 -7.9705 -0.8093 21 9 -1.2262 -6.8976 1.1247 22 6 -4.2506 -4.7042 0.8984 23 6 -5.1237 -5.7003 0.4810 24 6 -6.4398 -5.6827 0.8992 25 6 -6.8914 -4.6681 1.7232 26 6 -6.0262 -3.6714 2.1356 27 6 -4.7074 -3.6865 1.7260 28 6 0.0095 -2.5290 0.4923 29 1 -0.4850 0.8400 0.0004 30 1 2.8827 -3.5031 -1.0659 31 1 1.6541 -5.6250 -1.1525 32 1 -0.6023 -5.7939 -0.1940 33 1 -1.5562 -5.3407 -0.9909 34 1 -3.2490 -5.8070 -1.2823 35 1 -4.7727 -6.4907 -0.1659 36 1 -7.1180 -6.4599 0.5792 37 1 -7.9223 -4.6539 2.0450 38 1 -6.3821 -2.8801 2.7788 39 1 -4.0320 -2.9080 2.0487 40 1 -0.4502 -1.6661 0.9511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075140474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -80.627514 kcal Electronic energy + Delta-G solvation = -31406.192542 eV Core-core repulsion = 26738.031251 eV Total energy + Delta-G solvation = -4668.161291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.103 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.24323 -47.70149 -47.62017 -40.77809 -38.43904 -37.19655 -35.96105 -33.87961 -31.42443 -30.74476 -29.84889 -29.60194 -28.52501 -25.65974 -24.02289 -23.52768 -22.46182 -21.23904 -21.07007 -19.66424 -18.67079 -18.50793 -18.13072 -17.65645 -16.69750 -16.50885 -15.88589 -15.78681 -15.14716 -14.76029 -14.65647 -14.33443 -14.28463 -14.00253 -13.92281 -13.87790 -13.71346 -13.65520 -13.39396 -13.12738 -12.96273 -12.70056 -12.60803 -12.29823 -12.10595 -11.75100 -11.66724 -11.21537 -11.15896 -10.96051 -10.65448 -10.42778 -10.25420 -10.06039 -9.83425 -9.43553 -8.99602 -8.75557 -7.92765 -7.74387 -7.58808 -6.80335 -4.61840 1.39081 1.57399 1.98557 2.58923 2.67096 2.77566 3.00394 3.02059 3.03778 3.39663 3.71792 3.82637 3.95953 4.08180 4.19303 4.48293 4.75881 4.84652 5.06734 5.12020 5.26747 5.35545 5.44787 5.55371 5.63854 5.72052 5.84934 6.04052 6.18441 6.33155 6.51973 6.55501 6.66825 6.72496 6.82784 6.85272 7.10356 7.20325 7.25566 7.33236 7.50392 7.63951 7.83323 8.02153 8.36162 8.40431 8.66863 8.69414 10.05704 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.003967 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.479816 B = 7056.697506 C = 8923.405796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.068 3.932 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.451 4.451 8 H 0.081 0.919 9 C 0.096 3.904 10 C -0.200 4.200 11 C -0.094 4.094 12 C -0.252 4.252 13 C -0.130 4.130 14 C 0.574 3.426 15 O -0.503 6.503 16 N -0.549 5.549 17 C 0.017 3.983 18 C 0.431 3.569 19 F -0.177 7.177 20 F -0.179 7.179 21 F -0.166 7.166 22 C 0.153 3.847 23 C -0.163 4.163 24 C -0.100 4.100 25 C -0.150 4.150 26 C -0.100 4.100 27 C -0.154 4.154 28 C -0.088 4.088 29 H 0.284 0.716 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.188 0.812 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.175 0.825 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.698 -9.074 -2.013 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.149 4.149 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.220 4.220 11 C -0.112 4.112 12 C -0.271 4.271 13 C -0.134 4.134 14 C 0.369 3.631 15 O -0.379 6.379 16 N -0.271 5.271 17 C -0.107 4.107 18 C 0.375 3.625 19 F -0.158 7.158 20 F -0.161 7.161 21 F -0.147 7.147 22 C 0.060 3.940 23 C -0.183 4.183 24 C -0.119 4.119 25 C -0.169 4.169 26 C -0.119 4.119 27 C -0.173 4.173 28 C -0.108 4.108 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.204 0.796 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.192 0.808 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.970 -8.502 -1.489 12.448 hybrid contribution 0.261 0.180 -0.026 0.318 sum -8.709 -8.322 -1.515 12.141 Atomic orbital electron populations 1.69648 1.07437 1.29528 1.35966 1.25986 0.95012 1.01689 0.92213 0.86146 0.79796 0.79578 0.79961 1.18894 1.20168 1.18792 1.19619 0.94888 0.89838 1.43674 0.90053 1.17661 0.91782 0.92461 0.88805 1.21247 1.00569 0.94274 1.05927 1.20493 0.94249 0.96782 0.99696 1.21224 0.98293 0.97287 1.10252 1.19359 0.92133 0.96901 1.04969 1.19184 0.85288 0.77182 0.81428 1.90463 1.77500 1.43299 1.26613 1.45252 1.07692 1.33675 1.40498 1.24076 1.10064 0.84689 0.91919 1.21309 0.74572 0.88629 0.77997 1.93183 1.47048 1.90877 1.84687 1.93195 1.90306 1.68894 1.63661 1.93203 1.61685 1.95546 1.64272 1.18071 0.82815 0.95901 0.97240 1.21106 0.94111 0.98674 1.04418 1.20825 0.94765 0.98391 0.97889 1.21089 0.99606 0.96007 1.00243 1.21128 0.93110 0.98376 0.99247 1.22447 0.97150 0.99500 0.98252 1.22099 0.95428 0.95417 0.97884 0.90445 0.88251 0.88413 0.87050 0.79554 0.86227 0.85384 0.86098 0.86498 0.85942 0.80831 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.86 10.31 55.55 0.57 -19.28 16 2 C 0.07 1.62 5.42 -17.34 -0.09 1.52 16 3 Si 0.92 17.95 29.56 -169.99 -5.02 12.92 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.45 -11.18 9.08 -37.73 -0.34 -11.52 16 8 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.37 5.61 -106.87 -0.60 1.77 16 10 C -0.20 -4.42 9.78 -38.81 -0.38 -4.80 16 11 C -0.09 -1.86 10.01 -39.72 -0.40 -2.25 16 12 C -0.25 -4.94 6.88 -38.91 -0.27 -5.21 16 13 C -0.13 -2.89 5.62 -105.04 -0.59 -3.48 16 14 C 0.57 12.11 7.30 -12.33 -0.09 12.02 16 15 O -0.50 -11.63 13.26 5.32 0.07 -11.56 16 16 N -0.55 -9.57 2.64 -114.51 -0.30 -9.87 16 17 C 0.02 0.24 4.58 -4.04 -0.02 0.22 16 18 C 0.43 6.07 2.68 37.16 0.10 6.17 16 19 F -0.18 -2.49 13.36 2.25 0.03 -2.46 16 20 F -0.18 -2.28 17.32 2.25 0.04 -2.25 16 21 F -0.17 -2.77 14.87 2.25 0.03 -2.73 16 22 C 0.15 2.56 6.27 -83.72 -0.52 2.04 16 23 C -0.16 -2.26 7.61 -39.39 -0.30 -2.56 16 24 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 25 C -0.15 -1.86 10.04 -39.55 -0.40 -2.26 16 26 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 27 C -0.15 -2.65 8.95 -39.39 -0.35 -3.00 16 28 C -0.09 -2.20 8.27 -38.44 -0.32 -2.52 16 29 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 30 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 31 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.11 1.89 2.13 -52.49 -0.11 1.78 16 33 H 0.19 2.76 3.78 -55.39 -0.21 2.55 16 34 H 0.12 1.28 7.09 -51.93 -0.37 0.92 16 35 H 0.13 1.56 4.85 -52.48 -0.25 1.31 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.18 3.40 4.79 -54.73 -0.26 3.14 16 40 H 0.15 4.11 5.59 -52.48 -0.29 3.81 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -27.21 335.48 -8.05 -35.26 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -3.16 Total: 12.21 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -5.37 Total: -17.31 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.27 Total: -29.15 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.10 Total: -7.43 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.02 Total: 12.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.21 -8.05 -35.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075140474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.365 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds